Ibrahim I Cisse, Ignacio Izeddin, Sebastien Z Causse, Lydia Boudarene, Adrien Senecal, Leila Muresan, Claire Dugast-Darzacq, Bassam Hajj, Maxime Dahan, Xavier Darzacq. Science 2013
Times Cited: 256
Times Cited: 256
Times Cited
Times Co-cited
Similarity
Mediator and RNA polymerase II clusters associate in transcription-dependent condensates.
Won-Ki Cho, Jan-Hendrik Spille, Micca Hecht, Choongman Lee, Charles Li, Valentin Grube, Ibrahim I Cisse. Science 2018
Won-Ki Cho, Jan-Hendrik Spille, Micca Hecht, Choongman Lee, Charles Li, Valentin Grube, Ibrahim I Cisse. Science 2018
70
Coactivator condensation at super-enhancers links phase separation and gene control.
Benjamin R Sabari, Alessandra Dall'Agnese, Ann Boija, Isaac A Klein, Eliot L Coffey, Krishna Shrinivas, Brian J Abraham, Nancy M Hannett, Alicia V Zamudio, John C Manteiga,[...]. Science 2018
Benjamin R Sabari, Alessandra Dall'Agnese, Ann Boija, Isaac A Klein, Eliot L Coffey, Krishna Shrinivas, Brian J Abraham, Nancy M Hannett, Alicia V Zamudio, John C Manteiga,[...]. Science 2018
50
RNA Polymerase II cluster dynamics predict mRNA output in living cells.
Won-Ki Cho, Namrata Jayanth, Brian P English, Takuma Inoue, J Owen Andrews, William Conway, Jonathan B Grimm, Jan-Hendrik Spille, Luke D Lavis, Timothée Lionnet,[...]. Elife 2016
Won-Ki Cho, Namrata Jayanth, Brian P English, Takuma Inoue, J Owen Andrews, William Conway, Jonathan B Grimm, Jan-Hendrik Spille, Luke D Lavis, Timothée Lionnet,[...]. Elife 2016
42
Imaging dynamic and selective low-complexity domain interactions that control gene transcription.
Shasha Chong, Claire Dugast-Darzacq, Zhe Liu, Peng Dong, Gina M Dailey, Claudia Cattoglio, Alec Heckert, Sambashiva Banala, Luke Lavis, Xavier Darzacq,[...]. Science 2018
Shasha Chong, Claire Dugast-Darzacq, Zhe Liu, Peng Dong, Gina M Dailey, Claudia Cattoglio, Alec Heckert, Sambashiva Banala, Luke Lavis, Xavier Darzacq,[...]. Science 2018
41
Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains.
Ann Boija, Isaac A Klein, Benjamin R Sabari, Alessandra Dall'Agnese, Eliot L Coffey, Alicia V Zamudio, Charles H Li, Krishna Shrinivas, John C Manteiga, Nancy M Hannett,[...]. Cell 2018
Ann Boija, Isaac A Klein, Benjamin R Sabari, Alessandra Dall'Agnese, Eliot L Coffey, Alicia V Zamudio, Charles H Li, Krishna Shrinivas, John C Manteiga, Nancy M Hannett,[...]. Cell 2018
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RNA polymerase II clustering through carboxy-terminal domain phase separation.
Marc Boehning, Claire Dugast-Darzacq, Marija Rankovic, Anders S Hansen, Taekyung Yu, Herve Marie-Nelly, David T McSwiggen, Goran Kokic, Gina M Dailey, Patrick Cramer,[...]. Nat Struct Mol Biol 2018
Marc Boehning, Claire Dugast-Darzacq, Marija Rankovic, Anders S Hansen, Taekyung Yu, Herve Marie-Nelly, David T McSwiggen, Goran Kokic, Gina M Dailey, Patrick Cramer,[...]. Nat Struct Mol Biol 2018
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A Phase Separation Model for Transcriptional Control.
Denes Hnisz, Krishna Shrinivas, Richard A Young, Arup K Chakraborty, Phillip A Sharp. Cell 2017
Denes Hnisz, Krishna Shrinivas, Richard A Young, Arup K Chakraborty, Phillip A Sharp. Cell 2017
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Pol II phosphorylation regulates a switch between transcriptional and splicing condensates.
Yang Eric Guo, John C Manteiga, Jonathan E Henninger, Benjamin R Sabari, Alessandra Dall'Agnese, Nancy M Hannett, Jan-Hendrik Spille, Lena K Afeyan, Alicia V Zamudio, Krishna Shrinivas,[...]. Nature 2019
Yang Eric Guo, John C Manteiga, Jonathan E Henninger, Benjamin R Sabari, Alessandra Dall'Agnese, Nancy M Hannett, Jan-Hendrik Spille, Lena K Afeyan, Alicia V Zamudio, Krishna Shrinivas,[...]. Nature 2019
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Phase separation drives heterochromatin domain formation.
Amy R Strom, Alexander V Emelyanov, Mustafa Mir, Dmitry V Fyodorov, Xavier Darzacq, Gary H Karpen. Nature 2017
Amy R Strom, Alexander V Emelyanov, Mustafa Mir, Dmitry V Fyodorov, Xavier Darzacq, Gary H Karpen. Nature 2017
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Single-molecule dynamics of enhanceosome assembly in embryonic stem cells.
Jiji Chen, Zhengjian Zhang, Li Li, Bi-Chang Chen, Andrey Revyakin, Bassam Hajj, Wesley Legant, Maxime Dahan, Timothée Lionnet, Eric Betzig,[...]. Cell 2014
Jiji Chen, Zhengjian Zhang, Li Li, Bi-Chang Chen, Andrey Revyakin, Bassam Hajj, Wesley Legant, Maxime Dahan, Timothée Lionnet, Eric Betzig,[...]. Cell 2014
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Biomolecular condensates: organizers of cellular biochemistry.
Salman F Banani, Hyun O Lee, Anthony A Hyman, Michael K Rosen. Nat Rev Mol Cell Biol 2017
Salman F Banani, Hyun O Lee, Anthony A Hyman, Michael K Rosen. Nat Rev Mol Cell Biol 2017
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Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.
Adam G Larson, Daniel Elnatan, Madeline M Keenen, Michael J Trnka, Jonathan B Johnston, Alma L Burlingame, David A Agard, Sy Redding, Geeta J Narlikar. Nature 2017
Adam G Larson, Daniel Elnatan, Madeline M Keenen, Michael J Trnka, Jonathan B Johnston, Alma L Burlingame, David A Agard, Sy Redding, Geeta J Narlikar. Nature 2017
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Phase-separation mechanism for C-terminal hyperphosphorylation of RNA polymerase II.
Huasong Lu, Dan Yu, Anders S Hansen, Sourav Ganguly, Rongdiao Liu, Alec Heckert, Xavier Darzacq, Qiang Zhou. Nature 2018
Huasong Lu, Dan Yu, Anders S Hansen, Sourav Ganguly, Rongdiao Liu, Alec Heckert, Xavier Darzacq, Qiang Zhou. Nature 2018
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Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
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Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
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Dynamic interplay between enhancer-promoter topology and gene activity.
Hongtao Chen, Michal Levo, Lev Barinov, Miki Fujioka, James B Jaynes, Thomas Gregor. Nat Genet 2018
Hongtao Chen, Michal Levo, Lev Barinov, Miki Fujioka, James B Jaynes, Thomas Gregor. Nat Genet 2018
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Transcription-coupled changes in nuclear mobility of mammalian cis-regulatory elements.
Bo Gu, Tomek Swigut, Andrew Spencley, Matthew R Bauer, Mingyu Chung, Tobias Meyer, Joanna Wysocka. Science 2018
Bo Gu, Tomek Swigut, Andrew Spencley, Matthew R Bauer, Mingyu Chung, Tobias Meyer, Joanna Wysocka. Science 2018
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CTCF and cohesin regulate chromatin loop stability with distinct dynamics.
Anders S Hansen, Iryna Pustova, Claudia Cattoglio, Robert Tjian, Xavier Darzacq. Elife 2017
Anders S Hansen, Iryna Pustova, Claudia Cattoglio, Robert Tjian, Xavier Darzacq. Elife 2017
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Mammalian genes are transcribed with widely different bursting kinetics.
David M Suter, Nacho Molina, David Gatfield, Kim Schneider, Ueli Schibler, Felix Naef. Science 2011
David M Suter, Nacho Molina, David Gatfield, Kim Schneider, Ueli Schibler, Felix Naef. Science 2011
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Phosphorylation-regulated binding of RNA polymerase II to fibrous polymers of low-complexity domains.
Ilmin Kwon, Masato Kato, Siheng Xiang, Leeju Wu, Pano Theodoropoulos, Hamid Mirzaei, Tina Han, Shanhai Xie, Jeffry L Corden, Steven L McKnight. Cell 2013
Ilmin Kwon, Masato Kato, Siheng Xiang, Leeju Wu, Pano Theodoropoulos, Hamid Mirzaei, Tina Han, Shanhai Xie, Jeffry L Corden, Steven L McKnight. Cell 2013
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Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells.
Bogdan Bintu, Leslie J Mateo, Jun-Han Su, Nicholas A Sinnott-Armstrong, Mirae Parker, Seon Kinrot, Kei Yamaya, Alistair N Boettiger, Xiaowei Zhuang. Science 2018
Bogdan Bintu, Leslie J Mateo, Jun-Han Su, Nicholas A Sinnott-Armstrong, Mirae Parker, Seon Kinrot, Kei Yamaya, Alistair N Boettiger, Xiaowei Zhuang. Science 2018
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Single-Molecule Nanoscopy Elucidates RNA Polymerase II Transcription at Single Genes in Live Cells.
Jieru Li, Ankun Dong, Kamola Saydaminova, Hill Chang, Guanshi Wang, Hiroshi Ochiai, Takashi Yamamoto, Alexandros Pertsinidis. Cell 2019
Jieru Li, Ankun Dong, Kamola Saydaminova, Hill Chang, Guanshi Wang, Hiroshi Ochiai, Takashi Yamamoto, Alexandros Pertsinidis. Cell 2019
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Dynamic Organization of Chromatin Domains Revealed by Super-Resolution Live-Cell Imaging.
Tadasu Nozaki, Ryosuke Imai, Mai Tanbo, Ryosuke Nagashima, Sachiko Tamura, Tomomi Tani, Yasumasa Joti, Masaru Tomita, Kayo Hibino, Masato T Kanemaki,[...]. Mol Cell 2017
Tadasu Nozaki, Ryosuke Imai, Mai Tanbo, Ryosuke Nagashima, Sachiko Tamura, Tomomi Tani, Yasumasa Joti, Masaru Tomita, Kayo Hibino, Masato T Kanemaki,[...]. Mol Cell 2017
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Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II.
Ryosuke Nagashima, Kayo Hibino, S S Ashwin, Michael Babokhov, Shin Fujishiro, Ryosuke Imai, Tadasu Nozaki, Sachiko Tamura, Tomomi Tani, Hiroshi Kimura,[...]. J Cell Biol 2019
Ryosuke Nagashima, Kayo Hibino, S S Ashwin, Michael Babokhov, Shin Fujishiro, Ryosuke Imai, Tadasu Nozaki, Sachiko Tamura, Tomomi Tani, Hiroshi Kimura,[...]. J Cell Biol 2019
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3D imaging of Sox2 enhancer clusters in embryonic stem cells.
Zhe Liu, Wesley R Legant, Bi-Chang Chen, Li Li, Jonathan B Grimm, Luke D Lavis, Eric Betzig, Robert Tjian. Elife 2014
Zhe Liu, Wesley R Legant, Bi-Chang Chen, Li Li, Jonathan B Grimm, Luke D Lavis, Eric Betzig, Robert Tjian. Elife 2014
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Genomic encoding of transcriptional burst kinetics.
Anton J M Larsson, Per Johnsson, Michael Hagemann-Jensen, Leonard Hartmanis, Omid R Faridani, Björn Reinius, Åsa Segerstolpe, Chloe M Rivera, Bing Ren, Rickard Sandberg. Nature 2019
Anton J M Larsson, Per Johnsson, Michael Hagemann-Jensen, Leonard Hartmanis, Omid R Faridani, Björn Reinius, Åsa Segerstolpe, Chloe M Rivera, Bing Ren, Rickard Sandberg. Nature 2019
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In vivo dynamics of RNA polymerase II transcription.
Xavier Darzacq, Yaron Shav-Tal, Valeria de Turris, Yehuda Brody, Shailesh M Shenoy, Robert D Phair, Robert H Singer. Nat Struct Mol Biol 2007
Xavier Darzacq, Yaron Shav-Tal, Valeria de Turris, Yehuda Brody, Shailesh M Shenoy, Robert D Phair, Robert H Singer. Nat Struct Mol Biol 2007
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Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM).
Michael J Rust, Mark Bates, Xiaowei Zhuang. Nat Methods 2006
Michael J Rust, Mark Bates, Xiaowei Zhuang. Nat Methods 2006
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Organization of Chromatin by Intrinsic and Regulated Phase Separation.
Bryan A Gibson, Lynda K Doolittle, Maximillian W G Schneider, Liv E Jensen, Nathan Gamarra, Lisa Henry, Daniel W Gerlich, Sy Redding, Michael K Rosen. Cell 2019
Bryan A Gibson, Lynda K Doolittle, Maximillian W G Schneider, Liv E Jensen, Nathan Gamarra, Lisa Henry, Daniel W Gerlich, Sy Redding, Michael K Rosen. Cell 2019
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Single-molecule imaging of transcription factor binding to DNA in live mammalian cells.
J Christof M Gebhardt, David M Suter, Rahul Roy, Ziqing W Zhao, Alec R Chapman, Srinjan Basu, Tom Maniatis, X Sunney Xie. Nat Methods 2013
J Christof M Gebhardt, David M Suter, Rahul Roy, Ziqing W Zhao, Alec R Chapman, Srinjan Basu, Tom Maniatis, X Sunney Xie. Nat Methods 2013
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A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting.
Katjana Tantale, Florian Mueller, Alja Kozulic-Pirher, Annick Lesne, Jean-Marc Victor, Marie-Cécile Robert, Serena Capozi, Racha Chouaib, Volker Bäcker, Julio Mateos-Langerak,[...]. Nat Commun 2016
Katjana Tantale, Florian Mueller, Alja Kozulic-Pirher, Annick Lesne, Jean-Marc Victor, Marie-Cécile Robert, Serena Capozi, Racha Chouaib, Volker Bäcker, Julio Mateos-Langerak,[...]. Nat Commun 2016
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Imaging intracellular fluorescent proteins at nanometer resolution.
Eric Betzig, George H Patterson, Rachid Sougrat, O Wolf Lindwasser, Scott Olenych, Juan S Bonifacino, Michael W Davidson, Jennifer Lippincott-Schwartz, Harald F Hess. Science 2006
Eric Betzig, George H Patterson, Rachid Sougrat, O Wolf Lindwasser, Scott Olenych, Juan S Bonifacino, Michael W Davidson, Jennifer Lippincott-Schwartz, Harald F Hess. Science 2006
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Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo.
Maria Aurelia Ricci, Carlo Manzo, María Filomena García-Parajo, Melike Lakadamyali, Maria Pia Cosma. Cell 2015
Maria Aurelia Ricci, Carlo Manzo, María Filomena García-Parajo, Melike Lakadamyali, Maria Pia Cosma. Cell 2015
15
Enhancer Features that Drive Formation of Transcriptional Condensates.
Krishna Shrinivas, Benjamin R Sabari, Eliot L Coffey, Isaac A Klein, Ann Boija, Alicia V Zamudio, Jurian Schuijers, Nancy M Hannett, Phillip A Sharp, Richard A Young,[...]. Mol Cell 2019
Krishna Shrinivas, Benjamin R Sabari, Eliot L Coffey, Isaac A Klein, Ann Boija, Alicia V Zamudio, Jurian Schuijers, Nancy M Hannett, Phillip A Sharp, Richard A Young,[...]. Mol Cell 2019
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Cohesin Loss Eliminates All Loop Domains.
Suhas S P Rao, Su-Chen Huang, Brian Glenn St Hilaire, Jesse M Engreitz, Elizabeth M Perez, Kyong-Rim Kieffer-Kwon, Adrian L Sanborn, Sarah E Johnstone, Gavin D Bascom, Ivan D Bochkov,[...]. Cell 2017
Suhas S P Rao, Su-Chen Huang, Brian Glenn St Hilaire, Jesse M Engreitz, Elizabeth M Perez, Kyong-Rim Kieffer-Kwon, Adrian L Sanborn, Sarah E Johnstone, Gavin D Bascom, Ivan D Bochkov,[...]. Cell 2017
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Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
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Highly inclined thin illumination enables clear single-molecule imaging in cells.
Makio Tokunaga, Naoko Imamoto, Kumiko Sakata-Sogawa. Nat Methods 2008
Makio Tokunaga, Naoko Imamoto, Kumiko Sakata-Sogawa. Nat Methods 2008
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Liquid phase condensation in cell physiology and disease.
Yongdae Shin, Clifford P Brangwynne. Science 2017
Yongdae Shin, Clifford P Brangwynne. Science 2017
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RNA-Mediated Feedback Control of Transcriptional Condensates.
Jonathan E Henninger, Ozgur Oksuz, Krishna Shrinivas, Ido Sagi, Gary LeRoy, Ming M Zheng, J Owen Andrews, Alicia V Zamudio, Charalampos Lazaris, Nancy M Hannett,[...]. Cell 2021
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Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping.
Caroline R Bartman, Sarah C Hsu, Chris C-S Hsiung, Arjun Raj, Gerd A Blobel. Mol Cell 2016
Caroline R Bartman, Sarah C Hsu, Chris C-S Hsiung, Arjun Raj, Gerd A Blobel. Mol Cell 2016
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A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
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Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system.
Baohui Chen, Luke A Gilbert, Beth A Cimini, Joerg Schnitzbauer, Wei Zhang, Gene-Wei Li, Jason Park, Elizabeth H Blackburn, Jonathan S Weissman, Lei S Qi,[...]. Cell 2013
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Live-cell imaging reveals enhancer-dependent Sox2 transcription in the absence of enhancer proximity.
Jeffrey M Alexander, Juan Guan, Bingkun Li, Lenka Maliskova, Michael Song, Yin Shen, Bo Huang, Stavros Lomvardas, Orion D Weiner. Elife 2019
Jeffrey M Alexander, Juan Guan, Bingkun Li, Lenka Maliskova, Michael Song, Yin Shen, Bo Huang, Stavros Lomvardas, Orion D Weiner. Elife 2019
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Coexisting Liquid Phases Underlie Nucleolar Subcompartments.
Marina Feric, Nilesh Vaidya, Tyler S Harmon, Diana M Mitrea, Lian Zhu, Tiffany M Richardson, Richard W Kriwacki, Rohit V Pappu, Clifford P Brangwynne. Cell 2016
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Master transcription factors and mediator establish super-enhancers at key cell identity genes.
Warren A Whyte, David A Orlando, Denes Hnisz, Brian J Abraham, Charles Y Lin, Michael H Kagey, Peter B Rahl, Tong Ihn Lee, Richard A Young. Cell 2013
Warren A Whyte, David A Orlando, Denes Hnisz, Brian J Abraham, Charles Y Lin, Michael H Kagey, Peter B Rahl, Tong Ihn Lee, Richard A Young. Cell 2013
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Liquid-liquid phase separation in biology.
Anthony A Hyman, Christoph A Weber, Frank Jülicher. Annu Rev Cell Dev Biol 2014
Anthony A Hyman, Christoph A Weber, Frank Jülicher. Annu Rev Cell Dev Biol 2014
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Stochastic mRNA synthesis in mammalian cells.
Arjun Raj, Charles S Peskin, Daniel Tranchina, Diana Y Vargas, Sanjay Tyagi. PLoS Biol 2006
Arjun Raj, Charles S Peskin, Daniel Tranchina, Diana Y Vargas, Sanjay Tyagi. PLoS Biol 2006
13
13
Phase separation of ligand-activated enhancers licenses cooperative chromosomal enhancer assembly.
Sreejith J Nair, Lu Yang, Dario Meluzzi, Soohwan Oh, Feng Yang, Meyer J Friedman, Susan Wang, Tom Suter, Ibraheem Alshareedah, Amir Gamliel,[...]. Nat Struct Mol Biol 2019
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13
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.