A citation-based method for searching scientific literature

Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman, Loren L Looger, Karel Svoboda, Douglas S Kim. Nature 2013
Times Cited: 2088







List of co-cited articles
501 articles co-cited >1



Times Cited
  Citation     Count
Similarity


Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat. Methods 2012
11

Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.
Linda Madisen, Aleena R Garner, Daisuke Shimaoka, Amy S Chuong, Nathan C Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti,[...]. Neuron 2015
326
10

Thy1-GCaMP6 transgenic mice for neuronal population imaging in vivo.
Hod Dana, Tsai-Wen Chen, Amy Hu, Brenda C Shields, Caiying Guo, Loren L Looger, Douglas S Kim, Karel Svoboda. PLoS ONE 2014
150
10

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
228
9

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang,[...]. Neuron 2016
202
9

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat. Methods 2009
8


Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
428
8

Functional imaging of hippocampal place cells at cellular resolution during virtual navigation.
Daniel A Dombeck, Christopher D Harvey, Lin Tian, Loren L Looger, David W Tank. Nat. Neurosci. 2010
330
8

ScanImage: flexible software for operating laser scanning microscopes.
Thomas A Pologruto, Bernardo L Sabatini, Karel Svoboda. Biomed Eng Online 2003
582
7


NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data.
Eftychios A Pnevmatikakis, Andrea Giovannucci. J. Neurosci. Methods 2017
63
11

Large-scale imaging of cortical dynamics during sensory perception and behavior.
Joseph B Wekselblatt, Erik D Flister, Denise M Piscopo, Cristopher M Niell. J. Neurophysiol. 2016
57
12

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat. Methods 2019
51
13

Long-term dynamics of CA1 hippocampal place codes.
Yaniv Ziv, Laurie D Burns, Eric D Cocker, Elizabeth O Hamel, Kunal K Ghosh, Lacey J Kitch, Abbas El Gamal, Mark J Schnitzer. Nat. Neurosci. 2013
342
7

Automated analysis of cellular signals from large-scale calcium imaging data.
Eran A Mukamel, Axel Nimmerjahn, Mark J Schnitzer. Neuron 2009
277
7

Multiple dynamic representations in the motor cortex during sensorimotor learning.
D Huber, D A Gutnisky, S Peron, D H O'Connor, J S Wiegert, L Tian, T G Oertner, L L Looger, K Svoboda. Nature 2012
246
6

Genetically encoded indicators of neuronal activity.
Michael Z Lin, Mark J Schnitzer. Nat. Neurosci. 2016
179
6

An optimized fluorescent probe for visualizing glutamate neurotransmission.
Jonathan S Marvin, Bart G Borghuis, Lin Tian, Joseph Cichon, Mark T Harnett, Jasper Akerboom, Andrew Gordus, Sabine L Renninger, Tsai-Wen Chen, Cornelia I Bargmann,[...]. Nat. Methods 2013
321
6

Local diversity and fine-scale organization of receptive fields in mouse visual cortex.
Vincent Bonin, Mark H Histed, Sergey Yurgenson, R Clay Reid. J. Neurosci. 2011
122
6

Equalizing excitation-inhibition ratios across visual cortical neurons.
Mingshan Xue, Bassam V Atallah, Massimo Scanziani. Nature 2014
241
6

Arousal and locomotion make distinct contributions to cortical activity patterns and visual encoding.
Martin Vinck, Renata Batista-Brito, Ulf Knoblich, Jessica A Cardin. Neuron 2015
201
5


A resource of Cre driver lines for genetic targeting of GABAergic neurons in cerebral cortex.
Hiroki Taniguchi, Miao He, Priscilla Wu, Sangyong Kim, Raehum Paik, Ken Sugino, Duda Kvitsiani, Yu Fu, Jiangteng Lu, Ying Lin,[...]. Neuron 2011
786
5

Independent optical excitation of distinct neural populations.
Nathan C Klapoetke, Yasunobu Murata, Sung Soo Kim, Stefan R Pulver, Amanda Birdsey-Benson, Yong Ku Cho, Tania K Morimoto, Amy S Chuong, Eric J Carpenter, Zhijian Tian,[...]. Nat. Methods 2014
641
5

Robustness of Spike Deconvolution for Neuronal Calcium Imaging.
Marius Pachitariu, Carsen Stringer, Kenneth D Harris. J. Neurosci. 2018
13
38

GABAergic Interneurons in the Neocortex: From Cellular Properties to Circuits.
Robin Tremblay, Soohyun Lee, Bernardo Rudy. Neuron 2016
318
5

A pyramid approach to subpixel registration based on intensity.
P Thévenaz, U E Ruttimann, M Unser. IEEE Trans Image Process 1998
5

Functional specificity of local synaptic connections in neocortical networks.
Ho Ko, Sonja B Hofer, Bruno Pichler, Katherine A Buchanan, P Jesper Sjöström, Thomas D Mrsic-Flogel. Nature 2011
379
5

Functional organization of excitatory synaptic strength in primary visual cortex.
Lee Cossell, Maria Florencia Iacaruso, Dylan R Muir, Rachael Houlton, Elie N Sader, Ho Ko, Sonja B Hofer, Thomas D Mrsic-Flogel. Nature 2015
176
5

A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons.
D Gowanlock R Tervo, Bum-Yeol Hwang, Sarada Viswanathan, Thomas Gaj, Maria Lavzin, Kimberly D Ritola, Sarah Lindo, Susan Michael, Elena Kuleshova, David Ojala,[...]. Neuron 2016
241
4

moco: Fast Motion Correction for Calcium Imaging.
Alexander Dubbs, James Guevara, Rafael Yuste.  2016
43
9

Cortico-cortical projections in mouse visual cortex are functionally target specific.
Lindsey L Glickfeld, Mark L Andermann, Vincent Bonin, R Clay Reid. Nat. Neurosci. 2013
133
4

A cortical circuit for gain control by behavioral state.
Yu Fu, Jason M Tucciarone, J Sebastian Espinosa, Nengyin Sheng, Daniel P Darcy, Roger A Nicoll, Z Josh Huang, Michael P Stryker. Cell 2014
352
4

Sensory and decision-related activity propagate in a cortical feedback loop during touch perception.
Sung Eun Kwon, Hongdian Yang, Genki Minamisawa, Daniel H O'Connor. Nat. Neurosci. 2016
53
7

Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J. Neurosci. 2012
601
4

An expanded palette of genetically encoded Ca²⁺ indicators.
Yongxin Zhao, Satoko Araki, Jiahui Wu, Takayuki Teramoto, Yu-Fen Chang, Masahiro Nakano, Ahmed S Abdelfattah, Manabi Fujiwara, Takeshi Ishihara, Takeharu Nagai,[...]. Science 2011
604
4

Removable cranial windows for long-term imaging in awake mice.
Glenn J Goldey, Demetris K Roumis, Lindsey L Glickfeld, Aaron M Kerlin, R Clay Reid, Vincent Bonin, Dorothy P Schafer, Mark L Andermann. Nat Protoc 2014
99
4

Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat. Methods 2011
336
4

Chronic cellular imaging of entire cortical columns in awake mice using microprisms.
Mark L Andermann, Nathan B Gilfoy, Glenn J Goldey, Robert N S Sachdev, Markus Wölfel, David A McCormick, R Clay Reid, Michael J Levene. Neuron 2013
86
4

A dedicated circuit links direction-selective retinal ganglion cells to the primary visual cortex.
Alberto Cruz-Martín, Rana N El-Danaf, Fumitaka Osakada, Balaji Sriram, Onkar S Dhande, Phong L Nguyen, Edward M Callaway, Anirvan Ghosh, Andrew D Huberman. Nature 2014
142
4

Broadly tuned response properties of diverse inhibitory neuron subtypes in mouse visual cortex.
Aaron M Kerlin, Mark L Andermann, Vladimir K Berezovskii, R Clay Reid. Neuron 2010
299
4

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat. Neurosci. 2010
4


Spontaneous behaviors drive multidimensional, brainwide activity.
Carsen Stringer, Marius Pachitariu, Nicholas Steinmetz, Charu Bai Reddy, Matteo Carandini, Kenneth D Harris. Science 2019
71
5

Deep tissue two-photon microscopy.
Fritjof Helmchen, Winfried Denk. Nat. Methods 2005
4

Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice.
Takaki Komiyama, Takashi R Sato, Daniel H O'Connor, Ying-Xin Zhang, Daniel Huber, Bryan M Hooks, Mariano Gabitto, Karel Svoboda. Nature 2010
237
4

Natural neural projection dynamics underlying social behavior.
Lisa A Gunaydin, Logan Grosenick, Joel C Finkelstein, Isaac V Kauvar, Lief E Fenno, Avishek Adhikari, Stephan Lammel, Julie J Mirzabekov, Raag D Airan, Kelly A Zalocusky,[...]. Cell 2014
410
4

In vivo imaging of neural activity.
Weijian Yang, Rafael Yuste. Nat. Methods 2017
98
4

In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain.
Dimitre G Ouzounov, Tianyu Wang, Mengran Wang, Danielle D Feng, Nicholas G Horton, Jean C Cruz-Hernández, Yu-Ting Cheng, Jacob Reimer, Andreas S Tolias, Nozomi Nishimura,[...]. Nat. Methods 2017
119
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.