A citation-based method for searching scientific literature

Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman, Loren L Looger, Karel Svoboda, Douglas S Kim. Nature 2013
Times Cited: 2187







List of co-cited articles
565 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang,[...]. Neuron 2016
223
16

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
13

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat. Methods 2019
75
17

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
255
12

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat. Methods 2009
11

NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data.
Eftychios A Pnevmatikakis, Andrea Giovannucci. J. Neurosci. Methods 2017
79
12

Thy1-GCaMP6 transgenic mice for neuronal population imaging in vivo.
Hod Dana, Tsai-Wen Chen, Amy Hu, Brenda C Shields, Caiying Guo, Loren L Looger, Douglas S Kim, Karel Svoboda. PLoS ONE 2014
158
9


An expanded palette of genetically encoded Ca²⁺ indicators.
Yongxin Zhao, Satoko Araki, Jiahui Wu, Takayuki Teramoto, Yu-Fen Chang, Masahiro Nakano, Ahmed S Abdelfattah, Manabi Fujiwara, Takeshi Ishihara, Takeharu Nagai,[...]. Science 2011
620
8

Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.
Linda Madisen, Aleena R Garner, Daisuke Shimaoka, Amy S Chuong, Nathan C Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti,[...]. Neuron 2015
357
8

CaImAn an open source tool for scalable calcium imaging data analysis.
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou,[...]. Elife 2019
46
17

Large-scale imaging of cortical dynamics during sensory perception and behavior.
Joseph B Wekselblatt, Erik D Flister, Denise M Piscopo, Cristopher M Niell. J. Neurophysiol. 2016
67
10

Independent optical excitation of distinct neural populations.
Nathan C Klapoetke, Yasunobu Murata, Sung Soo Kim, Stefan R Pulver, Amanda Birdsey-Benson, Yong Ku Cho, Tania K Morimoto, Amy S Chuong, Eric J Carpenter, Zhijian Tian,[...]. Nat. Methods 2014
692
7

An optimized fluorescent probe for visualizing glutamate neurotransmission.
Jonathan S Marvin, Bart G Borghuis, Lin Tian, Joseph Cichon, Mark T Harnett, Jasper Akerboom, Andrew Gordus, Sabine L Renninger, Tsai-Wen Chen, Cornelia I Bargmann,[...]. Nat. Methods 2013
342
7

Long-term dynamics of CA1 hippocampal place codes.
Yaniv Ziv, Laurie D Burns, Eric D Cocker, Elizabeth O Hamel, Kunal K Ghosh, Lacey J Kitch, Abbas El Gamal, Mark J Schnitzer. Nat. Neurosci. 2013
360
7

Robustness of Spike Deconvolution for Neuronal Calcium Imaging.
Marius Pachitariu, Carsen Stringer, Kenneth D Harris. J. Neurosci. 2018
21
28

Arousal and locomotion make distinct contributions to cortical activity patterns and visual encoding.
Martin Vinck, Renata Batista-Brito, Ulf Knoblich, Jessica A Cardin. Neuron 2015
218
6

Genetically encoded indicators of neuronal activity.
Michael Z Lin, Mark J Schnitzer. Nat. Neurosci. 2016
197
6

Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J. Neurosci. 2012
615
6


Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat. Methods 2011
353
6

Deep tissue two-photon microscopy.
Fritjof Helmchen, Winfried Denk. Nat. Methods 2005
6

Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
454
6

Functional imaging of hippocampal place cells at cellular resolution during virtual navigation.
Daniel A Dombeck, Christopher D Harvey, Lin Tian, Loren L Looger, David W Tank. Nat. Neurosci. 2010
343
6

Cortical layer-specific critical dynamics triggering perception.
James H Marshel, Yoon Seok Kim, Timothy A Machado, Sean Quirin, Brandon Benson, Jonathan Kadmon, Cephra Raja, Adelaida Chibukhchyan, Charu Ramakrishnan, Masatoshi Inoue,[...]. Science 2019
42
14

Spontaneous behaviors drive multidimensional, brainwide activity.
Carsen Stringer, Marius Pachitariu, Nicholas Steinmetz, Charu Bai Reddy, Matteo Carandini, Kenneth D Harris. Science 2019
99
6

Equalizing excitation-inhibition ratios across visual cortical neurons.
Mingshan Xue, Bassam V Atallah, Massimo Scanziani. Nature 2014
256
6

Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data.
Pengcheng Zhou, Shanna L Resendez, Jose Rodriguez-Romaguera, Jessica C Jimenez, Shay Q Neufeld, Andrea Giovannucci, Johannes Friedrich, Eftychios A Pnevmatikakis, Garret D Stuber, Rene Hen,[...]. Elife 2018
73
8

Fast online deconvolution of calcium imaging data.
Johannes Friedrich, Pengcheng Zhou, Liam Paninski. PLoS Comput. Biol. 2017
54
9

moco: Fast Motion Correction for Calcium Imaging.
Alexander Dubbs, James Guevara, Rafael Yuste.  2016
47
10

ScanImage: flexible software for operating laser scanning microscopes.
Thomas A Pologruto, Bernardo L Sabatini, Karel Svoboda. Biomed Eng Online 2003
599
5

Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics.
Jasper Akerboom, Nicole Carreras Calderón, Lin Tian, Sebastian Wabnig, Matthias Prigge, Johan Tolö, Andrew Gordus, Michael B Orger, Kristen E Severi, John J Macklin,[...].  2013
327
5


Broadly tuned response properties of diverse inhibitory neuron subtypes in mouse visual cortex.
Aaron M Kerlin, Mark L Andermann, Vladimir K Berezovskii, R Clay Reid. Neuron 2010
313
5


Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice.
Takaki Komiyama, Takashi R Sato, Daniel H O'Connor, Ying-Xin Zhang, Daniel Huber, Bryan M Hooks, Mariano Gabitto, Karel Svoboda. Nature 2010
244
5

Natural neural projection dynamics underlying social behavior.
Lisa A Gunaydin, Logan Grosenick, Joel C Finkelstein, Isaac V Kauvar, Lief E Fenno, Avishek Adhikari, Stephan Lammel, Julie J Mirzabekov, Raag D Airan, Kelly A Zalocusky,[...]. Cell 2014
441
5

Controlling Visually Guided Behavior by Holographic Recalling of Cortical Ensembles.
Luis Carrillo-Reid, Shuting Han, Weijian Yang, Alejandro Akrouh, Rafael Yuste. Cell 2019
21
23

A pyramid approach to subpixel registration based on intensity.
P Thévenaz, U E Ruttimann, M Unser. IEEE Trans Image Process 1998
5

Local diversity and fine-scale organization of receptive fields in mouse visual cortex.
Vincent Bonin, Mark H Histed, Sergey Yurgenson, R Clay Reid. J. Neurosci. 2011
125
5

Efficient subpixel image registration algorithms.
Manuel Guizar-Sicairos, Samuel T Thurman, James R Fienup. Opt Lett 2008
477
5

Highly selective receptive fields in mouse visual cortex.
Cristopher M Niell, Michael P Stryker. J. Neurosci. 2008
527
5

Functional organization of excitatory synaptic strength in primary visual cortex.
Lee Cossell, Maria Florencia Iacaruso, Dylan R Muir, Rachael Houlton, Elie N Sader, Ho Ko, Sonja B Hofer, Thomas D Mrsic-Flogel. Nature 2015
184
5

Automated analysis of cellular signals from large-scale calcium imaging data.
Eran A Mukamel, Axel Nimmerjahn, Mark J Schnitzer. Neuron 2009
284
5

Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo.
Adam M Packer, Lloyd E Russell, Henry W P Dalgleish, Michael Häusser. Nat. Methods 2015
198
5

Fast nonnegative deconvolution for spike train inference from population calcium imaging.
Joshua T Vogelstein, Adam M Packer, Timothy A Machado, Tanya Sippy, Baktash Babadi, Rafael Yuste, Liam Paninski. J. Neurophysiol. 2010
178
4

Benchmarking Spike Rate Inference in Population Calcium Imaging.
Lucas Theis, Philipp Berens, Emmanouil Froudarakis, Jacob Reimer, Miroslav Román Rosón, Tom Baden, Thomas Euler, Andreas S Tolias, Matthias Bethge. Neuron 2016
56
7

Multiple dynamic representations in the motor cortex during sensorimotor learning.
D Huber, D A Gutnisky, S Peron, D H O'Connor, J S Wiegert, L Tian, T G Oertner, L L Looger, K Svoboda. Nature 2012
252
4

Cortical Membrane Potential Signature of Optimal States for Sensory Signal Detection.
Matthew J McGinley, Stephen V David, David A McCormick. Neuron 2015
219
4

Cortico-cortical projections in mouse visual cortex are functionally target specific.
Lindsey L Glickfeld, Mark L Andermann, Vincent Bonin, R Clay Reid. Nat. Neurosci. 2013
135
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.