A citation-based method for searching scientific literature

Nicole A Rapicavoli, Kun Qu, Jiajing Zhang, Megan Mikhail, Remi-Martin Laberge, Howard Y Chang. Elife 2013
Times Cited: 334







List of co-cited articles
962 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A long noncoding RNA mediates both activation and repression of immune response genes.
Susan Carpenter, Daniel Aiello, Maninjay K Atianand, Emiliano P Ricci, Pallavi Gandhi, Lisa L Hall, Meg Byron, Brian Monks, Meabh Henry-Bezy, Jeanne B Lawrence,[...]. Science 2013
668
41

The long noncoding RNA THRIL regulates TNFα expression through its interaction with hnRNPL.
Zhonghan Li, Ti-Chun Chao, Kung-Yen Chang, Nianwei Lin, Veena S Patil, Chisato Shimizu, Steven R Head, Jane C Burns, Tariq M Rana. Proc Natl Acad Sci U S A 2014
419
26


The STAT3-binding long noncoding RNA lnc-DC controls human dendritic cell differentiation.
Pin Wang, Yiquan Xue, Yanmei Han, Li Lin, Cong Wu, Sheng Xu, Zhengping Jiang, Junfang Xu, Qiuyan Liu, Xuetao Cao. Science 2014
733
20

A cytoplasmic NF-κB interacting long noncoding RNA blocks IκB phosphorylation and suppresses breast cancer metastasis.
Bodu Liu, Lijuan Sun, Qiang Liu, Chang Gong, Yandan Yao, Xiaobin Lv, Ling Lin, Herui Yao, Fengxi Su, Dangsheng Li,[...]. Cancer Cell 2015
608
19

LincRNA-Cox2 Promotes Late Inflammatory Gene Transcription in Macrophages through Modulating SWI/SNF-Mediated Chromatin Remodeling.
Guoku Hu, Ai-Yu Gong, Yang Wang, Shibin Ma, Xiqiang Chen, Jing Chen, Chun-Jen Su, Annemarie Shibata, Juliane K Strauss-Soukup, Kristen M Drescher,[...]. J Immunol 2016
132
18

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
17

A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation.
Maninjay K Atianand, Wenqian Hu, Ansuman T Satpathy, Ying Shen, Emiliano P Ricci, Juan R Alvarez-Dominguez, Ankit Bhatta, Stefan A Schattgen, Jason D McGowan, Juliana Blin,[...]. Cell 2016
279
17

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
15

The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-γ locus.
J Antonio Gomez, Orly L Wapinski, Yul W Yang, Jean-François Bureau, Smita Gopinath, Denise M Monack, Howard Y Chang, Michel Brahic, Karla Kirkegaard. Cell 2013
467
14

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.
Mitchell Guttman, Ido Amit, Manuel Garber, Courtney French, Michael F Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W Carey, John P Cassady,[...]. Nature 2009
13

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis.
Rajnish A Gupta, Nilay Shah, Kevin C Wang, Jeewon Kim, Hugo M Horlings, David J Wong, Miao-Chih Tsai, Tiffany Hung, Pedram Argani, John L Rinn,[...]. Nature 2010
13

Molecular mechanisms of long noncoding RNAs.
Kevin C Wang, Howard Y Chang. Mol Cell 2011
13

Evolution and functions of long noncoding RNAs.
Chris P Ponting, Peter L Oliver, Wolf Reik. Cell 2009
13

A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response.
Maite Huarte, Mitchell Guttman, David Feldser, Manuel Garber, Magdalena J Koziol, Daniela Kenzelmann-Broz, Ahmad M Khalil, Or Zuk, Ido Amit, Michal Rabani,[...]. Cell 2010
12

Long noncoding RNA as modular scaffold of histone modification complexes.
Miao-Chih Tsai, Ohad Manor, Yue Wan, Nima Mosammaparast, Jordon K Wang, Fei Lan, Yang Shi, Eran Segal, Howard Y Chang. Science 2010
12

The human long noncoding RNA lnc-IL7R regulates the inflammatory response.
Huachun Cui, Na Xie, Zheng Tan, Sami Banerjee, Victor John Thannickal, Edward Abraham, Gang Liu. Eur J Immunol 2014
137
12

Genome regulation by long noncoding RNAs.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2012
12

The LPS-inducible lncRNA Mirt2 is a negative regulator of inflammation.
Meng Du, Lin Yuan, Xin Tan, Dandan Huang, Xiaojing Wang, Zhe Zheng, Xiaoxiang Mao, Xiangrao Li, Liu Yang, Kun Huang,[...]. Nat Commun 2017
144
12

The landscape of long noncoding RNAs in the human transcriptome.
Matthew K Iyer, Yashar S Niknafs, Rohit Malik, Udit Singhal, Anirban Sahu, Yasuyuki Hosono, Terrence R Barrette, John R Prensner, Joseph R Evans, Shuang Zhao,[...]. Nat Genet 2015
12

A long noncoding RNA associated with susceptibility to celiac disease.
Ainara Castellanos-Rubio, Nora Fernandez-Jimenez, Radomir Kratchmarov, Xiaobing Luo, Govind Bhagat, Peter H R Green, Robert Schneider, Megerditch Kiledjian, Jose Ramon Bilbao, Sankar Ghosh. Science 2016
153
12

Cutting Edge: A Natural Antisense Transcript, AS-IL1α, Controls Inducible Transcription of the Proinflammatory Cytokine IL-1α.
Jennie Chan, Maninjay Atianand, Zhaozhao Jiang, Susan Carpenter, Daniel Aiello, Roland Elling, Katherine A Fitzgerald, Daniel R Caffrey. J Immunol 2015
72
15

Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli.
Katsutoshi Imamura, Naoto Imamachi, Gen Akizuki, Michiko Kumakura, Atsushi Kawaguchi, Kyosuke Nagata, Akihisa Kato, Yasushi Kawaguchi, Hiroki Sato, Misako Yoneda,[...]. Mol Cell 2014
434
11

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.
Moran N Cabili, Cole Trapnell, Loyal Goff, Magdalena Koziol, Barbara Tazon-Vega, Aviv Regev, John L Rinn. Genes Dev 2011
11


Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation.
Gangqing Hu, Qingsong Tang, Suveena Sharma, Fang Yu, Thelma M Escobar, Stefan A Muljo, Jinfang Zhu, Keji Zhao. Nat Immunol 2013
299
11

MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer.
Ping Ji, Sven Diederichs, Wenbing Wang, Sebastian Böing, Ralf Metzger, Paul M Schneider, Nicola Tidow, Burkhard Brandt, Horst Buerger, Etmar Bulk,[...]. Oncogene 2003
10

Unique features of long non-coding RNA biogenesis and function.
Jeffrey J Quinn, Howard Y Chang. Nat Rev Genet 2016
10

Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes.
Nicholas E IIott, James A Heward, Benoit Roux, Eleni Tsitsiou, Peter S Fenwick, Luca Lenzi, Ian Goodhead, Christiane Hertz-Fowler, Andreas Heger, Neil Hall,[...]. Nat Commun 2014
207
10

A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
Leonardo Salmena, Laura Poliseno, Yvonne Tay, Lev Kats, Pier Paolo Pandolfi. Cell 2011
10

Long non-coding RNA Lethe regulates hyperglycemia-induced reactive oxygen species production in macrophages.
Carlos Zgheib, Maggie M Hodges, Junyi Hu, Kenneth W Liechty, Junwang Xu. PLoS One 2017
51
17

Long non-coding RNAs: insights into functions.
Tim R Mercer, Marcel E Dinger, John S Mattick. Nat Rev Genet 2009
9

The long noncoding RNA ROCKI regulates inflammatory gene expression.
Qiong Zhang, Ti-Chun Chao, Veena S Patil, Yue Qin, Shashi Kant Tiwari, Joshua Chiou, Alexander Dobin, Chih-Ming Tsai, Zhonghan Li, Jason Dang,[...]. EMBO J 2019
45
20

NRAV, a long noncoding RNA, modulates antiviral responses through suppression of interferon-stimulated gene transcription.
Jing Ouyang, Xiaomei Zhu, Yuhai Chen, Haitao Wei, Qinghuang Chen, Xiaojuan Chi, Baomin Qi, Lianfeng Zhang, Yi Zhao, George Fu Gao,[...]. Cell Host Microbe 2014
200
9

Dephosphorylation of the nuclear factor of activated T cells (NFAT) transcription factor is regulated by an RNA-protein scaffold complex.
Sonia Sharma, Gregory M Findlay, Hozefa S Bandukwala, Shalini Oberdoerffer, Beate Baust, Zhigang Li, Valentina Schmidt, Patrick G Hogan, David B Sacks, Anjana Rao. Proc Natl Acad Sci U S A 2011
189
9

Gene regulation in the immune system by long noncoding RNAs.
Y Grace Chen, Ansuman T Satpathy, Howard Y Chang. Nat Immunol 2017
391
9

A coding-independent function of gene and pseudogene mRNAs regulates tumour biology.
Laura Poliseno, Leonardo Salmena, Jiangwen Zhang, Brett Carver, William J Haveman, Pier Paolo Pandolfi. Nature 2010
8

A long noncoding RNA, lincRNA-Tnfaip3, acts as a coregulator of NF-κB to modulate inflammatory gene transcription in mouse macrophages.
Shibin Ma, Zhenping Ming, Ai-Yu Gong, Yang Wang, Xiqiang Chen, Guoku Hu, Rui Zhou, Annemarie Shibata, Patrick C Swanson, Xian-Ming Chen. FASEB J 2017
54
14


The NF-κB-Responsive Long Noncoding RNA FIRRE Regulates Posttranscriptional Regulation of Inflammatory Gene Expression through Interacting with hnRNPU.
Yajing Lu, Xu Liu, Minghong Xie, Mingjia Liu, Mengling Ye, Mingxuan Li, Xian-Ming Chen, Xiaoqing Li, Rui Zhou. J Immunol 2017
70
11

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
John L Rinn, Michael Kertesz, Jordon K Wang, Sharon L Squazzo, Xiao Xu, Samantha A Brugmann, L Henry Goodnough, Jill A Helms, Peggy J Farnham, Eran Segal,[...]. Cell 2007
8

Self-Recognition of an Inducible Host lncRNA by RIG-I Feedback Restricts Innate Immune Response.
Minghong Jiang, Shikun Zhang, Zongheng Yang, Hongyu Lin, Jun Zhu, Lun Liu, Wendie Wang, Shuo Liu, Wei Liu, Yuanwu Ma,[...]. Cell 2018
135
8

A strategy for probing the function of noncoding RNAs finds a repressor of NFAT.
A T Willingham, A P Orth, S Batalov, E C Peters, B G Wen, P Aza-Blanc, J B Hogenesch, P G Schultz. Science 2005
569
8

The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4.
Valeria Ranzani, Grazisa Rossetti, Ilaria Panzeri, Alberto Arrigoni, Raoul Jp Bonnal, Serena Curti, Paola Gruarin, Elena Provasi, Elisa Sugliano, Maurizio Marconi,[...]. Nat Immunol 2015
229
8


A long noncoding RNA activated by TGF-β promotes the invasion-metastasis cascade in hepatocellular carcinoma.
Ji-hang Yuan, Fu Yang, Fang Wang, Jin-zhao Ma, Ying-jun Guo, Qi-fei Tao, Feng Liu, Wei Pan, Tian-tian Wang, Chuan-chuan Zhou,[...]. Cancer Cell 2014
7

An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.
Christine M Clemson, John N Hutchinson, Sergio A Sara, Alexander W Ensminger, Archa H Fox, Andrew Chess, Jeanne B Lawrence. Mol Cell 2009
955
7

Genetic Models Reveal cis and trans Immune-Regulatory Activities for lincRNA-Cox2.
Roland Elling, Elektra K Robinson, Barbara Shapleigh, Stephen C Liapis, Sergio Covarrubias, Sol Katzman, Abigail F Groff, Zhaozhao Jiang, Shiuli Agarwal, Mona Motwani,[...]. Cell Rep 2018
40
17

Local regulation of gene expression by lncRNA promoters, transcription and splicing.
Jesse M Engreitz, Jenna E Haines, Elizabeth M Perez, Glen Munson, Jenny Chen, Michael Kane, Patrick E McDonel, Mitchell Guttman, Eric S Lander. Nature 2016
680
7

Long Noncoding RNA and Cancer: A New Paradigm.
Arunoday Bhan, Milad Soleimani, Subhrangsu S Mandal. Cancer Res 2017
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.