A citation-based method for searching scientific literature

Mathieu D Jacob, Timothy E Audas, James Uniacke, Laura Trinkle-Mulcahy, Stephen Lee. Mol Biol Cell 2013
Times Cited: 66







List of co-cited articles
925 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



The nucleolus under stress.
Séverine Boulon, Belinda J Westman, Saskia Hutten, François-Michel Boisvert, Angus I Lamond. Mol Cell 2010
656
31

Quiescence-induced LncRNAs trigger H4K20 trimethylation and transcriptional silencing.
Holger Bierhoff, Marcel Andre Dammert, David Brocks, Silvia Dambacher, Gunnar Schotta, Ingrid Grummt. Mol Cell 2014
99
25

Intergenic transcripts regulate the epigenetic state of rRNA genes.
Christine Mayer, Kerstin-Maike Schmitz, Junwei Li, Ingrid Grummt, Raffaella Santoro. Mol Cell 2006
236
25

Alu element-containing RNAs maintain nucleolar structure and function.
Maïwen Caudron-Herger, Teresa Pankert, Jeanette Seiler, Attila Németh, Renate Voit, Ingrid Grummt, Karsten Rippe. EMBO J 2015
92
25

Coexisting Liquid Phases Underlie Nucleolar Subcompartments.
Marina Feric, Nilesh Vaidya, Tyler S Harmon, Diana M Mitrea, Lian Zhu, Tiffany M Richardson, Richard W Kriwacki, Rohit V Pappu, Clifford P Brangwynne. Cell 2016
847
25

Nucleolar proteome dynamics.
Jens S Andersen, Yun W Lam, Anthony K L Leung, Shao-En Ong, Carol E Lyon, Angus I Lamond, Matthias Mann. Nature 2005
864
21

Adaptation to Stressors by Systemic Protein Amyloidogenesis.
Timothy E Audas, Danielle E Audas, Mathieu D Jacob, J J David Ho, Mireille Khacho, Miling Wang, J Kishan Perera, Caroline Gardiner, Clay A Bennett, Trajen Head,[...]. Dev Cell 2016
96
21

The multifunctional nucleolus.
François-Michel Boisvert, Silvana van Koningsbruggen, Joaquín Navascués, Angus I Lamond. Nat Rev Mol Cell Biol 2007
19

The nucleolar detention pathway: A cellular strategy for regulating molecular networks.
Timothy E Audas, Mathieu D Jacob, Stephen Lee. Cell Cycle 2012
37
35

Regulation of ubiquitin ligase dynamics by the nucleolus.
Karim Mekhail, Mireille Khacho, Amanda Carrigan, Robert R J Hache, Lakshman Gunaratnam, Stephen Lee. J Cell Biol 2005
67
19

Stress-Induced Low Complexity RNA Activates Physiological Amyloidogenesis.
Miling Wang, Xianzun Tao, Mathieu D Jacob, Clayton A Bennett, J J David Ho, Mark L Gonzalgo, Timothy E Audas, Stephen Lee. Cell Rep 2018
46
26

Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes.
Clifford P Brangwynne, Timothy J Mitchison, Anthony A Hyman. Proc Natl Acad Sci U S A 2011
667
16

Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs.
Yuntao S Mao, Hongjae Sunwoo, Bin Zhang, David L Spector. Nat Cell Biol 2011
337
16

Initial genomics of the human nucleolus.
Attila Németh, Ana Conesa, Javier Santoyo-Lopez, Ignacio Medina, David Montaner, Bálint Péterfia, Irina Solovei, Thomas Cremer, Joaquin Dopazo, Gernot Längst. PLoS Genet 2010
243
16

Where no RNA polymerase has gone before: novel functional transcripts derived from the ribosomal intergenic spacer.
Mathieu D Jacob, Timothy E Audas, Sahra-Taylor Mullineux, Stephen Lee. Nucleus 2012
26
42

Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes.
Kerstin-Maike Schmitz, Christine Mayer, Anna Postepska, Ingrid Grummt. Genes Dev 2010
351
16


lncRNA-Induced Nucleosome Repositioning Reinforces Transcriptional Repression of rRNA Genes upon Hypotonic Stress.
Zhongliang Zhao, Marcel Andre Dammert, Ingrid Grummt, Holger Bierhoff. Cell Rep 2016
40
27

Heat shock represses rRNA synthesis by inactivation of TIF-IA and lncRNA-dependent changes in nucleosome positioning.
Zhongliang Zhao, Marcel A Dammert, Sven Hoppe, Holger Bierhoff, Ingrid Grummt. Nucleic Acids Res 2016
41
26

Nucleation of nuclear bodies by RNA.
Sergey P Shevtsov, Miroslav Dundr. Nat Cell Biol 2011
247
15

Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels.
Masato Kato, Tina W Han, Shanhai Xie, Kevin Shi, Xinlin Du, Leeju C Wu, Hamid Mirzaei, Elizabeth J Goldsmith, Jamie Longgood, Jimin Pei,[...]. Cell 2012
15

An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.
Christine M Clemson, John N Hutchinson, Sergio A Sara, Alexander W Ensminger, Archa H Fox, Andrew Chess, Jeanne B Lawrence. Mol Cell 2009
973
15


High-resolution whole-genome sequencing reveals that specific chromatin domains from most human chromosomes associate with nucleoli.
Silvana van Koningsbruggen, Marek Gierlinski, Pietá Schofield, David Martin, Geoffey J Barton, Yavuz Ariyurek, Johan T den Dunnen, Angus I Lamond. Mol Biol Cell 2010
206
15

Nucleolar targeting: the hub of the matter.
Edward Emmott, Julian A Hiscox. EMBO Rep 2009
211
15

Noncoding transcripts in sense and antisense orientation regulate the epigenetic state of ribosomal RNA genes.
H Bierhoff, K Schmitz, F Maass, J Ye, I Grummt. Cold Spring Harb Symp Quant Biol 2010
73
15

lncRNA maturation to initiate heterochromatin formation in the nucleolus is required for exit from pluripotency in ESCs.
Nataša Savić, Dominik Bär, Sergio Leone, Sandra C Frommel, Fabienne A Weber, Eva Vollenweider, Elena Ferrari, Urs Ziegler, Andres Kaech, Olga Shakhova,[...]. Cell Stem Cell 2014
89
15

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
13

Genome regulation by long noncoding RNAs.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2012
13

The shared genomic architecture of human nucleolar organizer regions.
Ioanna Floutsakou, Saumya Agrawal, Thong T Nguyen, Cathal Seoighe, Austen R D Ganley, Brian McStay. Genome Res 2013
76
13


The chromatin remodeling complex NuRD establishes the poised state of rRNA genes characterized by bivalent histone modifications and altered nucleosome positions.
Wenbing Xie, Te Ling, Yonggang Zhou, Weijun Feng, Qiaoyun Zhu, Henk G Stunnenberg, Ingrid Grummt, Wei Tao. Proc Natl Acad Sci U S A 2012
88
13


Phase transitions in the assembly of multivalent signalling proteins.
Pilong Li, Sudeep Banjade, Hui-Chun Cheng, Soyeon Kim, Baoyu Chen, Liang Guo, Marc Llaguno, Javoris V Hollingsworth, David S King, Salman F Banani,[...]. Nature 2012
12

MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles.
Yasnory T F Sasaki, Takashi Ideue, Miho Sano, Toutai Mituyama, Tetsuro Hirose. Proc Natl Acad Sci U S A 2009
428
12

Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation.
Radha Raman Pandey, Tanmoy Mondal, Faizaan Mohammad, Stefan Enroth, Lisa Redrup, Jan Komorowski, Takashi Nagano, Debora Mancini-Dinardo, Chandrasekhar Kanduri. Mol Cell 2008
865
12

MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles.
Hongjae Sunwoo, Marcel E Dinger, Jeremy E Wilusz, Paulo P Amaral, John S Mattick, David L Spector. Genome Res 2009
473
12


The epigenetics of rRNA genes: from molecular to chromosome biology.
Brian McStay, Ingrid Grummt. Annu Rev Cell Dev Biol 2008
370
12


HIF activation by pH-dependent nucleolar sequestration of VHL.
Karim Mekhail, Lakshman Gunaratnam, Marie-Eve Bonicalzi, Stephen Lee. Nat Cell Biol 2004
191
12

Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre.
Ezgi Hacisuleyman, Loyal A Goff, Cole Trapnell, Adam Williams, Jorge Henao-Mejia, Lei Sun, Patrick McClanahan, David G Hendrickson, Martin Sauvageau, David R Kelley,[...]. Nat Struct Mol Biol 2014
420
12

Intergenic transcripts originating from a subclass of ribosomal DNA repeats silence ribosomal RNA genes in trans.
Raffaella Santoro, Kerstin-Maike Schmitz, Juan Sandoval, Ingrid Grummt. EMBO Rep 2010
77
12

Liquid-liquid phase separation in biology.
Anthony A Hyman, Christoph A Weber, Frank Jülicher. Annu Rev Cell Dev Biol 2014
12

Biomolecular condensates: organizers of cellular biochemistry.
Salman F Banani, Hyun O Lee, Anthony A Hyman, Michael K Rosen. Nat Rev Mol Cell Biol 2017
12


SLERT Regulates DDX21 Rings Associated with Pol I Transcription.
Yu-Hang Xing, Run-Wen Yao, Yang Zhang, Chun-Jie Guo, Shan Jiang, Guang Xu, Rui Dong, Li Yang, Ling-Ling Chen. Cell 2017
138
12

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome.
Jing Zhao, Bryan K Sun, Jennifer A Erwin, Ji-Joon Song, Jeannie T Lee. Science 2008
10

Long noncoding RNA as modular scaffold of histone modification complexes.
Miao-Chih Tsai, Ohad Manor, Yue Wan, Nima Mosammaparast, Jordon K Wang, Fei Lan, Yang Shi, Eran Segal, Howard Y Chang. Science 2010
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.