A citation-based method for searching scientific literature

Wenjing She, Daniel Grimanelli, Kinga Rutowicz, Marek W J Whitehead, Marcin Puzio, Maciej Kotlinski, Andrzej Jerzmanowski, Célia Baroux. Development 2013
Times Cited: 103







List of co-cited articles
1454 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin.
Assaf Zemach, M Yvonne Kim, Ping-Hung Hsieh, Devin Coleman-Derr, Leor Eshed-Williams, Ka Thao, Stacey L Harmer, Daniel Zilberman. Cell 2013
598
29

Control of female gamete formation by a small RNA pathway in Arabidopsis.
Vianey Olmedo-Monfil, Noé Durán-Figueroa, Mario Arteaga-Vázquez, Edgar Demesa-Arévalo, Daphné Autran, Daniel Grimanelli, R Keith Slotkin, Robert A Martienssen, Jean-Philippe Vielle-Calzada. Nature 2010
338
26

Epigenetic reprogramming and small RNA silencing of transposable elements in pollen.
R Keith Slotkin, Matthew Vaughn, Filipe Borges, Milos Tanurdzić, Jörg D Becker, José A Feijó, Robert A Martienssen. Cell 2009
663
25


Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes.
Christian A Ibarra, Xiaoqi Feng, Vera K Schoft, Tzung-Fu Hsieh, Rie Uzawa, Jessica A Rodrigues, Assaf Zemach, Nina Chumak, Adriana Machlicova, Toshiro Nishimura,[...]. Science 2012
301
23

Zygotic resetting of the HISTONE 3 variant repertoire participates in epigenetic reprogramming in Arabidopsis.
Mathieu Ingouff, Svenja Rademacher, Sarah Holec, Lucija Soljić, Nie Xin, Anne Readshaw, Shi Hui Foo, Benoît Lahouze, Stefanie Sprunck, Frédéric Berger. Curr Biol 2010
152
23

Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin.
Vera K Schoft, Nina Chumak, Magdalena Mosiolek, Lucyna Slusarz, Vukoslav Komnenovic, Lynette Brownfield, David Twell, Tetsuji Kakutani, Hisashi Tamaru. EMBO Rep 2009
119
22

Embryo and endosperm inherit distinct chromatin and transcriptional states from the female gametes in Arabidopsis.
Marion Pillot, Célia Baroux, Mario Arteaga Vazquez, Daphné Autran, Olivier Leblanc, Jean Philippe Vielle-Calzada, Ueli Grossniklaus, Daniel Grimanelli. Plant Cell 2010
116
21

Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA.
Joseph P Calarco, Filipe Borges, Mark T A Donoghue, Frédéric Van Ex, Pauline E Jullien, Telma Lopes, Rui Gardner, Frédéric Berger, José A Feijó, Jörg D Becker,[...]. Cell 2012
342
21

Transcriptome analysis of the Arabidopsis megaspore mother cell uncovers the importance of RNA helicases for plant germline development.
Anja Schmidt, Samuel E Wuest, Kitty Vijverberg, Célia Baroux, Daniela Kleen, Ueli Grossniklaus. PLoS Biol 2011
87
21


Integrative epigenomic mapping defines four main chromatin states in Arabidopsis.
François Roudier, Ikhlak Ahmed, Caroline Bérard, Alexis Sarazin, Tristan Mary-Huard, Sandra Cortijo, Daniel Bouyer, Erwann Caillieux, Evelyne Duvernois-Berthet, Liza Al-Shikhley,[...]. EMBO J 2011
422
16

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis.
Hume Stroud, Truman Do, Jiamu Du, Xuehua Zhong, Suhua Feng, Lianna Johnson, Dinshaw J Patel, Steven E Jacobsen. Nat Struct Mol Biol 2014
457
16

The histone variant H2A.W defines heterochromatin and promotes chromatin condensation in Arabidopsis.
Ramesh Yelagandula, Hume Stroud, Sarah Holec, Keda Zhou, Suhua Feng, Xuehua Zhong, Uma M Muthurajan, Xin Nie, Tomokazu Kawashima, Martin Groth,[...]. Cell 2014
149
16

Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate.
Paul Fransz, J Hans De Jong, Martin Lysak, Monica Ruffini Castiglione, Ingo Schubert. Proc Natl Acad Sci U S A 2002
322
15

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity.
Marjori A Matzke, Rebecca A Mosher. Nat Rev Genet 2014
811
15

Somatic small RNA pathways promote the mitotic events of megagametogenesis during female reproductive development in Arabidopsis.
Matthew R Tucker, Takashi Okada, Yingkao Hu, Andrew Scholefield, Jennifer M Taylor, Anna M G Koltunow. Development 2012
94
14

DNA methylation dynamics during sexual reproduction in Arabidopsis thaliana.
Pauline E Jullien, Daichi Susaki, Ramesh Yelagandula, Tetsuya Higashiyama, Frédéric Berger. Curr Biol 2012
138
14

Inactivation of a DNA methylation pathway in maize reproductive organs results in apomixis-like phenotypes.
Marcelina Garcia-Aguilar, Caroline Michaud, Olivier Leblanc, Daniel Grimanelli. Plant Cell 2010
117
14

A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice.
Ken-Ichi Nonomura, Akane Morohoshi, Mutsuko Nakano, Mitsugu Eiguchi, Akio Miyao, Hirohiko Hirochika, Nori Kurata. Plant Cell 2007
238
14

A Specialized Histone H1 Variant Is Required for Adaptive Responses to Complex Abiotic Stress and Related DNA Methylation in Arabidopsis.
Kinga Rutowicz, Marcin Puzio, Joanna Halibart-Puzio, Maciej Lirski, Maciej Kotliński, Magdalena A Kroteń, Lukasz Knizewski, Bartosz Lange, Anna Muszewska, Katarzyna Śniegowska-Świerk,[...]. Plant Physiol 2015
69
20

Genome-wide demethylation of Arabidopsis endosperm.
Tzung-Fu Hsieh, Christian A Ibarra, Pedro Silva, Assaf Zemach, Leor Eshed-Williams, Robert L Fischer, Daniel Zilberman. Science 2009
424
13

Distinct dynamics of HISTONE3 variants between the two fertilization products in plants.
Mathieu Ingouff, Yuki Hamamura, Mathieu Gourgues, Tetsuya Higashiyama, Frédéric Berger. Curr Biol 2007
189
13

Production of viable gametes without meiosis in maize deficient for an ARGONAUTE protein.
Manjit Singh, Shalendra Goel, Robert B Meeley, Christelle Dantec, Hugues Parrinello, Caroline Michaud, Olivier Leblanc, Daniel Grimanelli. Plant Cell 2011
158
13


DNA demethylation is initiated in the central cells of Arabidopsis and rice.
Kyunghyuk Park, M Yvonne Kim, Martin Vickers, Jin-Sup Park, Youbong Hyun, Takashi Okamoto, Daniel Zilberman, Robert L Fischer, Xiaoqi Feng, Yeonhee Choi,[...]. Proc Natl Acad Sci U S A 2016
100
13

Live-cell analysis of DNA methylation during sexual reproduction in Arabidopsis reveals context and sex-specific dynamics controlled by noncanonical RdDM.
Mathieu Ingouff, Benjamin Selles, Caroline Michaud, Thiet M Vu, Frédéric Berger, Andrea J Schorn, Daphné Autran, Matthias Van Durme, Moritz K Nowack, Robert A Martienssen,[...]. Genes Dev 2017
59
22

Germline specification and function in plants.
Frédéric Berger, David Twell. Annu Rev Plant Biol 2011
131
12


Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana.
Hume Stroud, Sofía Otero, Bénédicte Desvoyes, Elena Ramírez-Parra, Steven E Jacobsen, Crisanto Gutierrez. Proc Natl Acad Sci U S A 2012
136
11

DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis.
Wim J J Soppe, Zuzana Jasencakova, Andreas Houben, Tetsuji Kakutani, Armin Meister, Michael S Huang, Steven E Jacobsen, Ingo Schubert, Paul F Fransz. EMBO J 2002
343
11

Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants.
Jiamu Du, Xuehua Zhong, Yana V Bernatavichute, Hume Stroud, Suhua Feng, Elena Caro, Ajay A Vashisht, Jolyon Terragni, Hang Gyeong Chin, Andy Tu,[...]. Cell 2012
298
11

Epigenetic reprogramming in plant sexual reproduction.
Tomokazu Kawashima, Frédéric Berger. Nat Rev Genet 2014
154
11

Chromatin remodelling during male gametophyte development.
Michael Borg, Frédéric Berger. Plant J 2015
47
23

Silencing in sperm cells is directed by RNA movement from the surrounding nurse cell.
Germán Martínez, Kaushik Panda, Claudia Köhler, R Keith Slotkin. Nat Plants 2016
121
11

RETINOBLASTOMA RELATED1 mediates germline entry in Arabidopsis.
Xin'Ai Zhao, Jonathan Bramsiepe, Matthias Van Durme, Shinichiro Komaki, Maria Ada Prusicki, Daisuke Maruyama, Joachim Forner, Anna Medzihradszky, Erik Wijnker, Hirofumi Harashima,[...]. Science 2017
54
20

Dynamic deposition of histone variant H3.3 accompanies developmental remodeling of the Arabidopsis transcriptome.
Heike Wollmann, Sarah Holec, Keith Alden, Neil D Clarke, Pierre-Étienne Jacques, Frédéric Berger. PLoS Genet 2012
88
11

Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis.
Ales Pecinka, Huy Q Dinh, Tuncay Baubec, Marisa Rosa, Nicole Lettner, Ortrun Mittelsten Scheid. Plant Cell 2010
269
10

Meiosis-specific loading of the centromere-specific histone CENH3 in Arabidopsis thaliana.
Maruthachalam Ravi, Fukashi Shibata, Joseph S Ramahi, Kiyotaka Nagaki, Changbin Chen, Minoru Murata, Simon W L Chan. PLoS Genet 2011
75
13

Arabidopsis WIH1 and WIH2 genes act in the transition from somatic to reproductive cell fate.
Diana Lieber, Jorge Lora, Sandra Schrempp, Michael Lenhard, Thomas Laux. Curr Biol 2011
58
17

Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis.
Xiaoyu Zhang, Oliver Clarenz, Shawn Cokus, Yana V Bernatavichute, Matteo Pellegrini, Justin Goodrich, Steven E Jacobsen. PLoS Biol 2007
510
10


DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis.
Yeonhee Choi, Mary Gehring, Lianna Johnson, Mike Hannon, John J Harada, Robert B Goldberg, Steven E Jacobsen, Robert L Fischer. Cell 2002
496
10

Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte.
Vera K Schoft, Nina Chumak, Yeonhee Choi, Mike Hannon, Marcelina Garcia-Aguilar, Adriana Machlicova, Lucyna Slusarz, Magdalena Mosiolek, Jin-Sup Park, Guen Tae Park,[...]. Proc Natl Acad Sci U S A 2011
120
10

Cell differentiation and development in Arabidopsis are associated with changes in histone dynamics at the single-cell level.
Stefanie Rosa, Vardis Ntoukakis, Nobuko Ohmido, Ali Pendle, Rita Abranches, Peter Shaw. Plant Cell 2014
43
23

Chromatin dynamics during plant sexual reproduction.
Wenjing She, Célia Baroux. Front Plant Sci 2014
25
40

Light signaling controls nuclear architecture reorganization during seedling establishment.
Clara Bourbousse, Imen Mestiri, Gerald Zabulon, Mickaël Bourge, Fabio Formiggini, Maria A Koini, Spencer C Brown, Paul Fransz, Chris Bowler, Fredy Barneche. Proc Natl Acad Sci U S A 2015
65
15

A Multigenic Network of ARGONAUTE4 Clade Members Controls Early Megaspore Formation in Arabidopsis.
Elvira Hernández-Lagana, Daniel Rodríguez-Leal, Judith Lúa, Jean-Philippe Vielle-Calzada. Genetics 2016
39
25




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.