A citation-based method for searching scientific literature

Allison R Wilcox, Pamela M Neri, Lynn A Volk, Lisa P Newmark, Eugene H Clark, Lawrence J Babb, Matthew Varugheese, Samuel J Aronson, Heidi L Rehm, David W Bates. J Am Med Inform Assoc 2014
Times Cited: 13







List of co-cited articles
44 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Communicating new knowledge on previously reported genetic variants.
Samuel J Aronson, Eugene H Clark, Matthew Varugheese, Samantha Baxter, Lawrence J Babb, Heidi L Rehm. Genet Med 2012
70
46

ClinVar: public archive of relationships among sequence variation and human phenotype.
Melissa J Landrum, Jennifer M Lee, George R Riley, Wonhee Jang, Wendy S Rubinstein, Deanna M Church, Donna R Maglott. Nucleic Acids Res 2014
46

Usability of a novel clinician interface for genetic results.
Pamela M Neri, Stephanie E Pollard, Lynn A Volk, Lisa P Newmark, Matthew Varugheese, Samantha Baxter, Samuel J Aronson, Heidi L Rehm, David W Bates. J Biomed Inform 2012
24
38

The GeneInsight Suite: a platform to support laboratory and provider use of DNA-based genetic testing.
Samuel J Aronson, Eugene H Clark, Lawrence J Babb, Samantha Baxter, Lisa M Farwell, Birgit H Funke, Amy Lovelette Hernandez, Victoria A Joshi, Elaine Lyon, Andrew R Parthum,[...]. Hum Mutat 2011
56
30

Electronic medical records and personalized medicine.
Mark A Hoffman, Marc S Williams. Hum Genet 2011
37
30

ACMG recommendations for standards for interpretation and reporting of sequence variations: Revisions 2007.
C Sue Richards, Sherri Bale, Daniel B Bellissimo, Soma Das, Wayne W Grody, Madhuri R Hegde, Elaine Lyon, Brian E Ward. Genet Med 2008
548
30

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.
Sue Richards, Nazneen Aziz, Sherri Bale, David Bick, Soma Das, Julie Gastier-Foster, Wayne W Grody, Madhuri Hegde, Elaine Lyon, Elaine Spector,[...]. Genet Med 2015
30

The Electronic Medical Records and Genomics (eMERGE) Network: past, present, and future.
Omri Gottesman, Helena Kuivaniemi, Gerard Tromp, W Andrew Faucett, Rongling Li, Teri A Manolio, Saskia C Sanderson, Joseph Kannry, Randi Zinberg, Melissa A Basford,[...]. Genet Med 2013
413
23

A clinician-driven automated system for integration of pharmacogenetic interpretations into an electronic medical record.
J K Hicks, K R Crews, J M Hoffman, N M Kornegay, M R Wilkinson, R Lorier, A Stoddard, W Yang, C Smith, C A Fernandez,[...]. Clin Pharmacol Ther 2012
72
23

Development and use of active clinical decision support for preemptive pharmacogenomics.
Gillian C Bell, Kristine R Crews, Mark R Wilkinson, Cyrine E Haidar, J Kevin Hicks, Donald K Baker, Nancy M Kornegay, Wenjian Yang, Shane J Cross, Scott C Howard,[...]. J Am Med Inform Assoc 2014
133
23

Crossing the omic chasm: a time for omic ancillary systems.
Justin Starren, Marc S Williams, Erwin P Bottinger. JAMA 2013
54
23

Practical challenges in integrating genomic data into the electronic health record.
Abel N Kho, Luke V Rasmussen, John J Connolly, Peggy L Peissig, Justin Starren, Hakon Hakonarson, M Geoffrey Hayes. Genet Med 2013
47
23

Technical desiderata for the integration of genomic data into Electronic Health Records.
Daniel R Masys, Gail P Jarvik, Neil F Abernethy, Nicholas R Anderson, George J Papanicolaou, Dina N Paltoo, Mark A Hoffman, Isaac S Kohane, Howard P Levy. J Biomed Inform 2012
65
23

The MedSeq Project: a randomized trial of integrating whole genome sequencing into clinical medicine.
Jason L Vassy, Denise M Lautenbach, Heather M McLaughlin, Sek Won Kong, Kurt D Christensen, Joel Krier, Isaac S Kohane, Lindsay Z Feuerman, Jennifer Blumenthal-Barby, J Scott Roberts,[...]. Trials 2014
102
23

A systematic approach to the reporting of medically relevant findings from whole genome sequencing.
Heather M McLaughlin, Ozge Ceyhan-Birsoy, Kurt D Christensen, Isaac S Kohane, Joel Krier, William J Lane, Denise Lautenbach, Matthew S Lebo, Kalotina Machini, Calum A MacRae,[...]. BMC Med Genet 2014
64
23

ACMG clinical laboratory standards for next-generation sequencing.
Heidi L Rehm, Sherri J Bale, Pinar Bayrak-Toydemir, Jonathan S Berg, Kerry K Brown, Joshua L Deignan, Michael J Friez, Birgit H Funke, Madhuri R Hegde, Elaine Lyon. Genet Med 2013
550
23

ClinGen--the Clinical Genome Resource.
Heidi L Rehm, Jonathan S Berg, Lisa D Brooks, Carlos D Bustamante, James P Evans, Melissa J Landrum, David H Ledbetter, Donna R Maglott, Christa Lese Martin, Robert L Nussbaum,[...]. N Engl J Med 2015
555
23

dbSNP: the NCBI database of genetic variation.
S T Sherry, M H Ward, M Kholodov, J Baker, L Phan, E M Smigielski, K Sirotkin. Nucleic Acids Res 2001
23

Pharmacogenomics knowledge for personalized medicine.
M Whirl-Carrillo, E M McDonagh, J M Hebert, L Gong, K Sangkuhl, C F Thorn, R B Altman, T E Klein. Clin Pharmacol Ther 2012
23

Technical desiderata for the integration of genomic data with clinical decision support.
Brandon M Welch, Karen Eilbeck, Guilherme Del Fiol, Laurence J Meyer, Kensaku Kawamoto. J Biomed Inform 2014
21
15

Sequence variant classification and reporting: recommendations for improving the interpretation of cancer susceptibility genetic test results.
Sharon E Plon, Diana M Eccles, Douglas Easton, William D Foulkes, Maurizio Genuardi, Marc S Greenblatt, Frans B L Hogervorst, Nicoline Hoogerbrugge, Amanda B Spurdle, Sean V Tavtigian. Hum Mutat 2008
576
15

Operational implementation of prospective genotyping for personalized medicine: the design of the Vanderbilt PREDICT project.
J M Pulley, J C Denny, J F Peterson, G R Bernard, C L Vnencak-Jones, A H Ramirez, J T Delaney, E Bowton, K Brothers, K Johnson,[...]. Clin Pharmacol Ther 2012
273
15

The CLIPMERGE PGx Program: clinical implementation of personalized medicine through electronic health records and genomics-pharmacogenomics.
O Gottesman, S A Scott, S B Ellis, C L Overby, A Ludtke, J-S Hulot, J Hall, K Chatani, K Myers, J L Kannry,[...]. Clin Pharmacol Ther 2013
101
15

The Human Gene Mutation Database: 2008 update.
Peter D Stenson, Matthew Mort, Edward V Ball, Katy Howells, Andrew D Phillips, Nick St Thomas, David N Cooper. Genome Med 2009
615
15

Electronic health record design and implementation for pharmacogenomics: a local perspective.
Josh F Peterson, Erica Bowton, Julie R Field, Marc Beller, Jennifer Mitchell, Jonathan Schildcrout, William Gregg, Kevin Johnson, Jim N Jirjis, Dan M Roden,[...]. Genet Med 2013
67
15

Towards a Universal Clinical Genomics Database: the 2012 International Standards for Cytogenomic Arrays Consortium Meeting.
Erin Rooney Riggs, Karen E Wain, Darlene Riethmaier, Melissa Savage, Bethanny Smith-Packard, Erin B Kaminsky, Heidi L Rehm, Christa Lese Martin, David H Ledbetter, W Andrew Faucett. Hum Mutat 2013
22
15

Actionable, pathogenic incidental findings in 1,000 participants' exomes.
Michael O Dorschner, Laura M Amendola, Emily H Turner, Peggy D Robertson, Brian H Shirts, Carlos J Gallego, Robin L Bennett, Kelly L Jones, Mari J Tokita, James T Bennett,[...]. Am J Hum Genet 2013
275
15

Molecular findings among patients referred for clinical whole-exome sequencing.
Yaping Yang, Donna M Muzny, Fan Xia, Zhiyv Niu, Richard Person, Yan Ding, Patricia Ward, Alicia Braxton, Min Wang, Christian Buhay,[...]. JAMA 2014
846
15

Taxonomizing, sizing, and overcoming the incidentalome.
Isaac S Kohane, Michael Hsing, Sek Won Kong. Genet Med 2012
90
15

The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website.
S Bamford, E Dawson, S Forbes, J Clements, R Pettett, A Dogan, A Flanagan, J Teague, P A Futreal, M R Stratton,[...]. Br J Cancer 2004
851
15

Predicting functional effect of human missense mutations using PolyPhen-2.
Ivan Adzhubei, Daniel M Jordan, Shamil R Sunyaev. Curr Protoc Hum Genet 2013
15

Using SIFT and PolyPhen to predict loss-of-function and gain-of-function mutations.
Sarah E Flanagan, Ann-Marie Patch, Sian Ellard. Genet Test Mol Biomarkers 2010
233
15

SIFT web server: predicting effects of amino acid substitutions on proteins.
Ngak-Leng Sim, Prateek Kumar, Jing Hu, Steven Henikoff, Georg Schneider, Pauline C Ng. Nucleic Acids Res 2012
15

CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record.
Brian H Shirts, Joseph S Salama, Samuel J Aronson, Wendy K Chung, Stacy W Gray, Lucia A Hindorff, Gail P Jarvik, Sharon E Plon, Elena M Stoffel, Peter Z Tarczy-Hornoch,[...]. J Am Med Inform Assoc 2015
55
15

A preliminary investigation of genetic counselors' information needs when receiving a variant of uncertain significance result: a mixed methods study.
Courtney L Scherr, Noralane M Lindor, Teri L Malo, Fergus J Couch, Susan T Vadaparampil. Genet Med 2015
17
15

Implementing genomic medicine in the clinic: the future is here.
Teri A Manolio, Rex L Chisholm, Brad Ozenberger, Dan M Roden, Marc S Williams, Richard Wilson, David Bick, Erwin P Bottinger, Murray H Brilliant, Charis Eng,[...]. Genet Med 2013
343
15

PG4KDS: a model for the clinical implementation of pre-emptive pharmacogenetics.
James M Hoffman, Cyrine E Haidar, Mark R Wilkinson, Kristine R Crews, Donald K Baker, Nancy M Kornegay, Wenjian Yang, Ching-Hon Pui, Ulrike M Reiss, Aditya H Gaur,[...]. Am J Med Genet C Semin Med Genet 2014
159
15

Design and anticipated outcomes of the eMERGE-PGx project: a multicenter pilot for preemptive pharmacogenomics in electronic health record systems.
L J Rasmussen-Torvik, S C Stallings, A S Gordon, B Almoguera, M A Basford, S J Bielinski, A Brautbar, M H Brilliant, D S Carrell, J J Connolly,[...]. Clin Pharmacol Ther 2014
150
15

Characterizing genetic variants for clinical action.
Erin M Ramos, Corina Din-Lovinescu, Jonathan S Berg, Lisa D Brooks, Audrey Duncanson, Michael Dunn, Peter Good, Tim J P Hubbard, Gail P Jarvik, Christopher O'Donnell,[...]. Am J Med Genet C Semin Med Genet 2014
33
15

Preemptive genotyping for personalized medicine: design of the right drug, right dose, right time-using genomic data to individualize treatment protocol.
Suzette J Bielinski, Janet E Olson, Jyotishman Pathak, Richard M Weinshilboum, Liewei Wang, Kelly J Lyke, Euijung Ryu, Paul V Targonski, Michael D Van Norstrand, Matthew A Hathcock,[...]. Mayo Clin Proc 2014
193
15

ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing.
Robert C Green, Jonathan S Berg, Wayne W Grody, Sarah S Kalia, Bruce R Korf, Christa L Martin, Amy L McGuire, Robert L Nussbaum, Julianne M O'Daniel, Kelly E Ormond,[...]. Genet Med 2013
15

Integrating genetic information resources with an EHR.
Guilherme Del Fiol, Marc S Williams, Naveen Maram, Roberto A Rocha, Grant M Wood, Joyce A Mitchell. AMIA Annu Symp Proc 2006
12
16

ClinVar: public archive of interpretations of clinically relevant variants.
Melissa J Landrum, Jennifer M Lee, Mark Benson, Garth Brown, Chen Chao, Shanmuga Chitipiralla, Baoshan Gu, Jennifer Hart, Douglas Hoffman, Jeffrey Hoover,[...]. Nucleic Acids Res 2016
15

Evaluation: A Qualitative Pilot Study of Novel Information Technology Infrastructure to Communicate Genetic Variant Updates.
Stephanie Klinkenberg-Ramirez, Pamela M Neri, Lynn A Volk, Sara J Samaha, Lisa P Newmark, Stephanie Pollard, Matthew Varugheese, Samantha Baxter, Samuel J Aronson, Heidi L Rehm,[...]. Appl Clin Inform 2016
9
22

SIFT: Predicting amino acid changes that affect protein function.
Pauline C Ng, Steven Henikoff. Nucleic Acids Res 2003
7


Development and evaluation of a comprehensive clinical decision support taxonomy: comparison of front-end tools in commercial and internally developed electronic health record systems.
Adam Wright, Dean F Sittig, Joan S Ash, Joshua Feblowitz, Seth Meltzer, Carmit McMullen, Ken Guappone, Jim Carpenter, Joshua Richardson, Linas Simonaitis,[...]. J Am Med Inform Assoc 2011
72
7

Clinical assessment incorporating a personal genome.
Euan A Ashley, Atul J Butte, Matthew T Wheeler, Rong Chen, Teri E Klein, Frederick E Dewey, Joel T Dudley, Kelly E Ormond, Aleksandra Pavlovic, Alexander A Morgan,[...]. Lancet 2010
468
7

Use of pharmacogenetic and clinical factors to predict the therapeutic dose of warfarin.
B F Gage, C Eby, J A Johnson, E Deych, M J Rieder, P M Ridker, P E Milligan, G Grice, P Lenzini, A E Rettie,[...]. Clin Pharmacol Ther 2008
553
7



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.