A citation-based method for searching scientific literature

Jesse Dabney, Michael Knapp, Isabelle Glocke, Marie-Theres Gansauge, Antje Weihmann, Birgit Nickel, Cristina Valdiosera, Nuria García, Svante Pääbo, Juan-Luis Arsuaga, Matthias Meyer. Proc Natl Acad Sci U S A 2013
Times Cited: 477







List of co-cited articles
691 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
47

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters.
Hákon Jónsson, Aurélien Ginolhac, Mikkel Schubert, Philip L F Johnson, Ludovic Orlando. Bioinformatics 2013
476
47


ANGSD: Analysis of Next Generation Sequencing Data.
Thorfinn Sand Korneliussen, Anders Albrechtsen, Rasmus Nielsen. BMC Bioinformatics 2014
755
27


Ancient admixture in human history.
Nick Patterson, Priya Moorjani, Yontao Luo, Swapan Mallick, Nadin Rohland, Yiping Zhan, Teri Genschoreck, Teresa Webster, David Reich. Genetics 2012
868
22

HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing.
Hansi Weissensteiner, Dominic Pacher, Anita Kloss-Brandstätter, Lukas Forer, Günther Specht, Hans-Jürgen Bandelt, Florian Kronenberg, Antonio Salas, Sebastian Schönherr. Nucleic Acids Res 2016
300
20

A revised timescale for human evolution based on ancient mitochondrial genomes.
Qiaomei Fu, Alissa Mittnik, Philip L F Johnson, Kirsten Bos, Martina Lari, Ruth Bollongino, Chengkai Sun, Liane Giemsch, Ralf Schmitz, Joachim Burger,[...]. Curr Biol 2013
258
20

Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA.
Gabriel Renaud, Viviane Slon, Ana T Duggan, Janet Kelso. Genome Biol 2015
137
20

Massive migration from the steppe was a source for Indo-European languages in Europe.
Wolfgang Haak, Iosif Lazaridis, Nick Patterson, Nadin Rohland, Swapan Mallick, Bastien Llamas, Guido Brandt, Susanne Nordenfelt, Eadaoin Harney, Kristin Stewardson,[...]. Nature 2015
532
20

Partial uracil-DNA-glycosylase treatment for screening of ancient DNA.
Nadin Rohland, Eadaoin Harney, Swapan Mallick, Susanne Nordenfelt, David Reich. Philos Trans R Soc Lond B Biol Sci 2015
159
20

Patterns of damage in genomic DNA sequences from a Neandertal.
Adrian W Briggs, Udo Stenzel, Philip L F Johnson, Richard E Green, Janet Kelso, Kay Prüfer, Matthias Meyer, Johannes Krause, Michael T Ronan, Michael Lachmann,[...]. Proc Natl Acad Sci U S A 2007
433
19

EAGER: efficient ancient genome reconstruction.
Alexander Peltzer, Günter Jäger, Alexander Herbig, Alexander Seitz, Christian Kniep, Johannes Krause, Kay Nieselt. Genome Biol 2016
125
19

Population structure and eigenanalysis.
Nick Patterson, Alkes L Price, David Reich. PLoS Genet 2006
18

Optimal Ancient DNA Yields from the Inner Ear Part of the Human Petrous Bone.
Ron Pinhasi, Daniel Fernandes, Kendra Sirak, Mario Novak, Sarah Connell, Songül Alpaslan-Roodenberg, Fokke Gerritsen, Vyacheslav Moiseyev, Andrey Gromov, Pál Raczky,[...]. PLoS One 2015
135
18

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7.
Andrew Rambaut, Alexei J Drummond, Dong Xie, Guy Baele, Marc A Suchard. Syst Biol 2018
18

AdapterRemoval v2: rapid adapter trimming, identification, and read merging.
Mikkel Schubert, Stinus Lindgreen, Ludovic Orlando. BMC Res Notes 2016
403
18

Population genomics of Bronze Age Eurasia.
Morten E Allentoft, Martin Sikora, Karl-Göran Sjögren, Simon Rasmussen, Morten Rasmussen, Jesper Stenderup, Peter B Damgaard, Hannes Schroeder, Torbjörn Ahlström, Lasse Vinner,[...]. Nature 2015
453
17

The genetic history of Ice Age Europe.
Qiaomei Fu, Cosimo Posth, Mateja Hajdinjak, Martin Petr, Swapan Mallick, Daniel Fernandes, Anja Furtwängler, Wolfgang Haak, Matthias Meyer, Alissa Mittnik,[...]. Nature 2016
281
17

A high-coverage genome sequence from an archaic Denisovan individual.
Matthias Meyer, Martin Kircher, Marie-Theres Gansauge, Heng Li, Fernando Racimo, Swapan Mallick, Joshua G Schraiber, Flora Jay, Kay Prüfer, Cesare de Filippo,[...]. Science 2012
838
17

Genome flux and stasis in a five millennium transect of European prehistory.
Cristina Gamba, Eppie R Jones, Matthew D Teasdale, Russell L McLaughlin, Gloria Gonzalez-Fortes, Valeria Mattiangeli, László Domboróczki, Ivett Kővári, Ildikó Pap, Alexandra Anders,[...]. Nat Commun 2014
276
16

Fast model-based estimation of ancestry in unrelated individuals.
David H Alexander, John Novembre, Kenneth Lange. Genome Res 2009
16

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform.
Martin Kircher, Susanna Sawyer, Matthias Meyer. Nucleic Acids Res 2012
522
16

Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA.
Susanna Sawyer, Johannes Krause, Katerina Guschanski, Vincent Savolainen, Svante Pääbo. PLoS One 2012
236
16

Ancient human genomes suggest three ancestral populations for present-day Europeans.
Iosif Lazaridis, Nick Patterson, Alissa Mittnik, Gabriel Renaud, Swapan Mallick, Karola Kirsanow, Peter H Sudmant, Joshua G Schraiber, Sergi Castellano, Mark Lipson,[...]. Nature 2014
543
16

Genome-wide patterns of selection in 230 ancient Eurasians.
Iain Mathieson, Iosif Lazaridis, Nadin Rohland, Swapan Mallick, Nick Patterson, Songül Alpaslan Roodenberg, Eadaoin Harney, Kristin Stewardson, Daniel Fernandes, Mario Novak,[...]. Nature 2015
475
16

An early modern human from Romania with a recent Neanderthal ancestor.
Qiaomei Fu, Mateja Hajdinjak, Oana Teodora Moldovan, Silviu Constantin, Swapan Mallick, Pontus Skoglund, Nick Patterson, Nadin Rohland, Iosif Lazaridis, Birgit Nickel,[...]. Nature 2015
243
16

Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA.
R M Andrews, I Kubacka, P F Chinnery, R N Lightowlers, D M Turnbull, N Howell. Nat Genet 1999
15

Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal.
Pontus Skoglund, Bernd H Northoff, Michael V Shunkov, Anatoli P Derevianko, Svante Pääbo, Johannes Krause, Mattias Jakobsson. Proc Natl Acad Sci U S A 2014
160
15

Multiplexed DNA sequence capture of mitochondrial genomes using PCR products.
Tomislav Maricic, Mark Whitten, Svante Pääbo. PLoS One 2010
290
15


PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
13

Reducing microbial and human contamination in DNA extractions from ancient bones and teeth.
Petra Korlević, Tobias Gerber, Marie-Theres Gansauge, Mateja Hajdinjak, Sarah Nagel, Ayinuer Aximu-Petri, Matthias Meyer. Biotechniques 2015
115
13

DNA analysis of an early modern human from Tianyuan Cave, China.
Qiaomei Fu, Matthias Meyer, Xing Gao, Udo Stenzel, Hernán A Burbano, Janet Kelso, Svante Pääbo. Proc Natl Acad Sci U S A 2013
220
13

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.
Swapan Mallick, Heng Li, Mark Lipson, Iain Mathieson, Melissa Gymrek, Fernando Racimo, Mengyao Zhao, Niru Chennagiri, Susanne Nordenfelt, Arti Tandon,[...]. Nature 2016
501
13

The formation of human populations in South and Central Asia.
Vagheesh M Narasimhan, Nick Patterson, Priya Moorjani, Nadin Rohland, Rebecca Bernardos, Swapan Mallick, Iosif Lazaridis, Nathan Nakatsuka, Iñigo Olalde, Mark Lipson,[...]. Science 2019
93
13

Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA.
Adrian W Briggs, Udo Stenzel, Matthias Meyer, Johannes Krause, Martin Kircher, Svante Pääbo. Nucleic Acids Res 2010
224
12

jModelTest 2: more models, new heuristics and parallel computing.
Diego Darriba, Guillermo L Taboada, Ramón Doallo, David Posada. Nat Methods 2012
12

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
12


Genomic insights into the origin of farming in the ancient Near East.
Iosif Lazaridis, Dani Nadel, Gary Rollefson, Deborah C Merrett, Nadin Rohland, Swapan Mallick, Daniel Fernandes, Mario Novak, Beatriz Gamarra, Kendra Sirak,[...]. Nature 2016
300
12

Ancient DNA extraction from bones and teeth.
Nadin Rohland, Michael Hofreiter. Nat Protoc 2007
247
11

Improving ancient DNA read mapping against modern reference genomes.
Mikkel Schubert, Aurelien Ginolhac, Stinus Lindgreen, John F Thompson, Khaled A S Al-Rasheid, Eske Willerslev, Anders Krogh, Ludovic Orlando. BMC Genomics 2012
128
11

BEAST: Bayesian evolutionary analysis by sampling trees.
Alexei J Drummond, Andrew Rambaut. BMC Evol Biol 2007
11

Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
11



A draft sequence of the Neandertal genome.
Richard E Green, Johannes Krause, Adrian W Briggs, Tomislav Maricic, Udo Stenzel, Martin Kircher, Nick Patterson, Heng Li, Weiwei Zhai, Markus Hsi-Yang Fritz,[...]. Science 2010
10

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
Sudhir Kumar, Glen Stecher, Michael Li, Christina Knyaz, Koichiro Tamura. Mol Biol Evol 2018
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.