A citation-based method for searching scientific literature

Vojo Deretic, Tatsuya Saitoh, Shizuo Akira. Nat Rev Immunol 2013
Times Cited: 1093







List of co-cited articles
1124 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Autophagy in immunity and inflammation.
Beth Levine, Noboru Mizushima, Herbert W Virgin. Nature 2011
19

The role of Atg proteins in autophagosome formation.
Noboru Mizushima, Tamotsu Yoshimori, Yoshinori Ohsumi. Annu Rev Cell Dev Biol 2011
13

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
Daniel J Klionsky, Kotb Abdelmohsen, Akihisa Abe, Md Joynal Abedin, Hagai Abeliovich, Abraham Acevedo Arozena, Hiroaki Adachi, Christopher M Adams, Peter D Adams, Khosrow Adeli,[...]. Autophagy 2016
12

Autophagy: cellular and molecular mechanisms.
Danielle Glick, Sandra Barth, Kay F Macleod. J Pathol 2010
12

AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1.
Joungmok Kim, Mondira Kundu, Benoit Viollet, Kun-Liang Guan. Nat Cell Biol 2011
10

Autophagy during viral infection - a double-edged sword.
Younho Choi, James W Bowman, Jae U Jung. Nat Rev Microbiol 2018
228
9

Autophagy regulates lipid metabolism.
Rajat Singh, Susmita Kaushik, Yongjun Wang, Youqing Xiang, Inna Novak, Masaaki Komatsu, Keiji Tanaka, Ana Maria Cuervo, Mark J Czaja. Nature 2009
9

Autophagy balances inflammation in innate immunity.
Vojo Deretic, Beth Levine. Autophagy 2018
189
8

TBK-1 promotes autophagy-mediated antimicrobial defense by controlling autophagosome maturation.
Manohar Pilli, John Arko-Mensah, Marisa Ponpuak, Esteban Roberts, Sharon Master, Michael A Mandell, Nicolas Dupont, Wojciech Ornatowski, Shanya Jiang, Steven B Bradfute,[...]. Immunity 2012
387
8

Attenuation of cGAS-STING signaling is mediated by a p62/SQSTM1-dependent autophagy pathway activated by TBK1.
Thaneas Prabakaran, Chiranjeevi Bodda, Christian Krapp, Bao-Cun Zhang, Maria H Christensen, Chenglong Sun, Line Reinert, Yujia Cai, Søren B Jensen, Morten K Skouboe,[...]. EMBO J 2018
120
8

Autophagy: renovation of cells and tissues.
Noboru Mizushima, Masaaki Komatsu. Cell 2011
8

Autophagy-based unconventional secretory pathway for extracellular delivery of IL-1β.
Nicolas Dupont, Shanya Jiang, Manohar Pilli, Wojciech Ornatowski, Dhruva Bhattacharya, Vojo Deretic. EMBO J 2011
546
7

Activation of autophagy by inflammatory signals limits IL-1β production by targeting ubiquitinated inflammasomes for destruction.
Chong-Shan Shi, Kevin Shenderov, Ning-Na Huang, Juraj Kabat, Mones Abu-Asab, Katherine A Fitzgerald, Alan Sher, John H Kehrl. Nat Immunol 2012
820
7

Mechanism and medical implications of mammalian autophagy.
Ivan Dikic, Zvulun Elazar. Nat Rev Mol Cell Biol 2018
822
7

Autophagy is a defense mechanism inhibiting BCG and Mycobacterium tuberculosis survival in infected macrophages.
Maximiliano G Gutierrez, Sharon S Master, Sudha B Singh, Gregory A Taylor, Maria I Colombo, Vojo Deretic. Cell 2004
7

Chloroquine inhibits autophagic flux by decreasing autophagosome-lysosome fusion.
Mario Mauthe, Idil Orhon, Cecilia Rocchi, Xingdong Zhou, Morten Luhr, Kerst-Jan Hijlkema, Robert P Coppes, Nikolai Engedal, Muriel Mari, Fulvio Reggiori. Autophagy 2018
561
7

Autophagy-Independent Functions of the Autophagy Machinery.
Lorenzo Galluzzi, Douglas R Green. Cell 2019
206
7


Autophagy in the pathogenesis of disease.
Beth Levine, Guido Kroemer. Cell 2008
6

Autophagy fights disease through cellular self-digestion.
Noboru Mizushima, Beth Levine, Ana Maria Cuervo, Daniel J Klionsky. Nature 2008
6


TRIM-mediated precision autophagy targets cytoplasmic regulators of innate immunity.
Tomonori Kimura, Ashish Jain, Seong Won Choi, Michael A Mandell, Kate Schroder, Terje Johansen, Vojo Deretic. J Cell Biol 2015
150
6

The role of autophagy during the early neonatal starvation period.
Akiko Kuma, Masahiko Hatano, Makoto Matsui, Akitsugu Yamamoto, Haruaki Nakaya, Tamotsu Yoshimori, Yoshinori Ohsumi, Takeshi Tokuhisa, Noboru Mizushima. Nature 2004
6

LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.
Y Kabeya, N Mizushima, T Ueno, A Yamamoto, T Kirisako, T Noda, E Kominami, Y Ohsumi, T Yoshimori. EMBO J 2000
6

TFEB links autophagy to lysosomal biogenesis.
Carmine Settembre, Chiara Di Malta, Vinicia Assunta Polito, Moises Garcia Arencibia, Francesco Vetrini, Serkan Erdin, Serpil Uckac Erdin, Tuong Huynh, Diego Medina, Pasqualina Colella,[...]. Science 2011
6

Molecular definitions of autophagy and related processes.
Lorenzo Galluzzi, Eric H Baehrecke, Andrea Ballabio, Patricia Boya, José Manuel Bravo-San Pedro, Francesco Cecconi, Augustine M Choi, Charleen T Chu, Patrice Codogno, Maria Isabel Colombo,[...]. EMBO J 2017
698
6

Dual role of 3-methyladenine in modulation of autophagy via different temporal patterns of inhibition on class I and III phosphoinositide 3-kinase.
You-Tong Wu, Hui-Ling Tan, Guanghou Shui, Chantal Bauvy, Qing Huang, Markus R Wenk, Choon-Nam Ong, Patrice Codogno, Han-Ming Shen. J Biol Chem 2010
711
6

Cleavage of GSDMD by inflammatory caspases determines pyroptotic cell death.
Jianjin Shi, Yue Zhao, Kun Wang, Xuyan Shi, Yue Wang, Huanwei Huang, Yinghua Zhuang, Tao Cai, Fengchao Wang, Feng Shao. Nature 2015
6

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1.
Daniel J Klionsky, Amal Kamal Abdel-Aziz, Sara Abdelfatah, Mahmoud Abdellatif, Asghar Abdoli, Steffen Abel, Hagai Abeliovich, Marie H Abildgaard, Yakubu Princely Abudu, Abraham Acevedo-Arozena,[...]. Autophagy 2021
156
6

Autophagy and autophagy-related proteins in the immune system.
Shusaku T Shibutani, Tatsuya Saitoh, Heike Nowag, Christian Münz, Tamotsu Yoshimori. Nat Immunol 2015
286
5

Autophagy promotes T-cell survival through degradation of proteins of the cell death machinery.
J R Kovacs, C Li, Q Yang, G Li, I G Garcia, S Ju, D G Roodman, J J Windle, X Zhang, B Lu. Cell Death Differ 2012
136
5

Autophagy: machinery and regulation.
Zhangyuan Yin, Clarence Pascual, Daniel J Klionsky. Microb Cell 2016
282
5


p62/SQSTM1 forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death.
Geir Bjørkøy, Trond Lamark, Andreas Brech, Heidi Outzen, Maria Perander, Aud Overvatn, Harald Stenmark, Terje Johansen. J Cell Biol 2005
5

Termination of autophagy and reformation of lysosomes regulated by mTOR.
Li Yu, Christina K McPhee, Lixin Zheng, Gonzalo A Mardones, Yueguang Rong, Junya Peng, Na Mi, Ying Zhao, Zhihua Liu, Fengyi Wan,[...]. Nature 2010
919
5

Autophagy in the renewal, differentiation and homeostasis of immune cells.
Alexander J Clarke, Anna Katharina Simon. Nat Rev Immunol 2019
110
5

Autophagy protects against active tuberculosis by suppressing bacterial burden and inflammation.
Eliseo F Castillo, Alexander Dekonenko, John Arko-Mensah, Michael A Mandell, Nicolas Dupont, Shanya Jiang, Monica Delgado-Vargas, Graham S Timmins, Dhruva Bhattacharya, Hongliang Yang,[...]. Proc Natl Acad Sci U S A 2012
283
5

The machinery of macroautophagy.
Yuchen Feng, Ding He, Zhiyuan Yao, Daniel J Klionsky. Cell Res 2014
5

SKP2 attenuates autophagy through Beclin1-ubiquitination and its inhibition reduces MERS-Coronavirus infection.
Nils C Gassen, Daniela Niemeyer, Doreen Muth, Victor M Corman, Silvia Martinelli, Alwine Gassen, Kathrin Hafner, Jan Papies, Kirstin Mösbauer, Andreas Zellner,[...]. Nat Commun 2019
148
5

Enteroviruses Remodel Autophagic Trafficking through Regulation of Host SNARE Proteins to Promote Virus Replication and Cell Exit.
Abigail K Corona, Holly M Saulsbery, Angel F Corona Velazquez, William T Jackson. Cell Rep 2018
56
8

Secretory autophagy.
Marisa Ponpuak, Michael A Mandell, Tomonori Kimura, Santosh Chauhan, Cédric Cleyrat, Vojo Deretic. Curr Opin Cell Biol 2015
233
5

Enteroviral Infection Inhibits Autophagic Flux via Disruption of the SNARE Complex to Enhance Viral Replication.
Yasir Mohamud, Junyan Shi, Junyan Qu, Tak Poon, Yuan Chao Xue, Haoyu Deng, Jingchun Zhang, Honglin Luo. Cell Rep 2018
56
8

p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy.
Serhiy Pankiv, Terje Høyvarde Clausen, Trond Lamark, Andreas Brech, Jack-Ansgar Bruun, Heidi Outzen, Aud Øvervatn, Geir Bjørkøy, Terje Johansen. J Biol Chem 2007
5

The Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy.
Naonobu Fujita, Takashi Itoh, Hiroko Omori, Mitsunori Fukuda, Takeshi Noda, Tamotsu Yoshimori. Mol Biol Cell 2008
677
5

TRIMs and Galectins Globally Cooperate and TRIM16 and Galectin-3 Co-direct Autophagy in Endomembrane Damage Homeostasis.
Santosh Chauhan, Suresh Kumar, Ashish Jain, Marisa Ponpuak, Michal H Mudd, Tomonori Kimura, Seong Won Choi, Ryan Peters, Michael Mandell, Jack-Ansgar Bruun,[...]. Dev Cell 2016
177
5

LC3 and Autophagy.
Isei Tanida, Takashi Ueno, Eiki Kominami. Methods Mol Biol 2008
865
5


The Ubiquitin Ligase Smurf1 Functions in Selective Autophagy of Mycobacterium tuberculosis and Anti-tuberculous Host Defense.
Luis H Franco, Vidhya R Nair, Caitlyn R Scharn, Ramnik J Xavier, Jose R Torrealba, Michael U Shiloh, Beth Levine. Cell Host Microbe 2017
92
5

The ubiquitin ligase parkin mediates resistance to intracellular pathogens.
Paolo S Manzanillo, Janelle S Ayres, Robert O Watson, Angela C Collins, Gianne Souza, Chris S Rae, David S Schneider, Ken Nakamura, Michael U Shiloh, Jeffery S Cox. Nature 2013
331
5

Mammalian autophagy: core molecular machinery and signaling regulation.
Zhifen Yang, Daniel J Klionsky. Curr Opin Cell Biol 2010
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.