A citation-based method for searching scientific literature

Travis I Zack, Stephen E Schumacher, Scott L Carter, Andre D Cherniack, Gordon Saksena, Barbara Tabak, Michael S Lawrence, Cheng-Zhong Zhsng, Jeremiah Wala, Craig H Mermel, Carrie Sougnez, Stacey B Gabriel, Bryan Hernandez, Hui Shen, Peter W Laird, Gad Getz, Matthew Meyerson, Rameen Beroukhim. Nat Genet 2013
Times Cited: 1072







List of co-cited articles
759 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genomic and Functional Approaches to Understanding Cancer Aneuploidy.
Alison M Taylor, Juliann Shih, Gavin Ha, Galen F Gao, Xiaoyang Zhang, Ashton C Berger, Steven E Schumacher, Chen Wang, Hai Hu, Jianfang Liu,[...]. Cancer Cell 2018
348
22

The landscape of somatic copy-number alteration across human cancers.
Rameen Beroukhim, Craig H Mermel, Dale Porter, Guo Wei, Soumya Raychaudhuri, Jerry Donovan, Jordi Barretina, Jesse S Boehm, Jennifer Dobson, Mitsuyoshi Urashima,[...]. Nature 2010
21

Genome doubling shapes the evolution and prognosis of advanced cancers.
Craig M Bielski, Ahmet Zehir, Alexander V Penson, Mark T A Donoghue, Walid Chatila, Joshua Armenia, Matthew T Chang, Alison M Schram, Philip Jonsson, Chaitanya Bandlamudi,[...]. Nat Genet 2018
181
18

GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers.
Craig H Mermel, Steven E Schumacher, Barbara Hill, Matthew L Meyerson, Rameen Beroukhim, Gad Getz. Genome Biol 2011
15

Absolute quantification of somatic DNA alterations in human cancer.
Scott L Carter, Kristian Cibulskis, Elena Helman, Aaron McKenna, Hui Shen, Travis Zack, Peter W Laird, Robert C Onofrio, Wendy Winckler, Barbara A Weir,[...]. Nat Biotechnol 2012
14

Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy.
Teresa Davoli, Hajime Uno, Eric C Wooten, Stephen J Elledge. Science 2017
567
12


Tolerance of whole-genome doubling propagates chromosomal instability and accelerates cancer genome evolution.
Sally M Dewhurst, Nicholas McGranahan, Rebecca A Burrell, Andrew J Rowan, Eva Grönroos, David Endesfelder, Tejal Joshi, Dmitri Mouradov, Peter Gibbs, Robyn L Ward,[...]. Cancer Discov 2014
228
11

Context is everything: aneuploidy in cancer.
Uri Ben-David, Angelika Amon. Nat Rev Genet 2020
129
11

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
10

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
10

Cytokinesis failure generating tetraploids promotes tumorigenesis in p53-null cells.
Takeshi Fujiwara, Madhavi Bandi, Masayuki Nitta, Elena V Ivanova, Roderick T Bronson, David Pellman. Nature 2005
743
10



Generation of cancer stem-like cells through the formation of polyploid giant cancer cells.
S Zhang, I Mercado-Uribe, Z Xing, B Sun, J Kuang, J Liu. Oncogene 2014
227
9

Chromosomal instability, tolerance of mitotic errors and multidrug resistance are promoted by tetraploidization in human cells.
Anastasia Y Kuznetsova, Katarzyna Seget, Giuliana K Moeller, Mirjam S de Pagter, Jeroen A D M de Roos, Milena Dürrbaum, Christian Kuffer, Stefan Müller, Guido J R Zaman, Wigard P Kloosterman,[...]. Cell Cycle 2015
87
10

Massive genomic rearrangement acquired in a single catastrophic event during cancer development.
Philip J Stephens, Chris D Greenman, Beiyuan Fu, Fengtang Yang, Graham R Bignell, Laura J Mudie, Erin D Pleasance, King Wai Lau, David Beare, Lucy A Stebbings,[...]. Cell 2011
9

Near-tetraploid cancer cells show chromosome instability triggered by replication stress and exhibit enhanced invasiveness.
Darawalee Wangsa, Isabel Quintanilla, Keyvan Torabi, Maria Vila-Casadesús, Amaia Ercilla, Gregory Klus, Zeynep Yuce, Claudia Galofré, Miriam Cuatrecasas, Juan José Lozano,[...]. FASEB J 2018
28
32

Whole-genome doubling confers unique genetic vulnerabilities on tumour cells.
Ryan J Quinton, Amanda DiDomizio, Marc A Vittoria, Kristýna Kotýnková, Carlos J Ticas, Sheena Patel, Yusuke Koga, Jasmine Vakhshoorzadeh, Nicole Hermance, Taruho S Kuroda,[...]. Nature 2021
31
29

Mutational heterogeneity in cancer and the search for new cancer-associated genes.
Michael S Lawrence, Petar Stojanov, Paz Polak, Gregory V Kryukov, Kristian Cibulskis, Andrey Sivachenko, Scott L Carter, Chip Stewart, Craig H Mermel, Steven A Roberts,[...]. Nature 2013
9

CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing.
Eric Talevich, A Hunter Shain, Thomas Botton, Boris C Bastian. PLoS Comput Biol 2016
629
8


Comprehensive Characterization of Cancer Driver Genes and Mutations.
Matthew H Bailey, Collin Tokheim, Eduard Porta-Pardo, Sohini Sengupta, Denis Bertrand, Amila Weerasinghe, Antonio Colaprico, Michael C Wendl, Jaegil Kim, Brendan Reardon,[...]. Cell 2018
777
8

Chromothripsis from DNA damage in micronuclei.
Cheng-Zhong Zhang, Alexander Spektor, Hauke Cornils, Joshua M Francis, Emily K Jackson, Shiwei Liu, Matthew Meyerson, David Pellman. Nature 2015
580
8

Signatures of mutational processes in human cancer.
Ludmil B Alexandrov, Serena Nik-Zainal, David C Wedge, Samuel A J R Aparicio, Sam Behjati, Andrew V Biankin, Graham R Bignell, Niccolò Bolli, Ake Borg, Anne-Lise Børresen-Dale,[...]. Nature 2013
8

Clonal evolution in cancer.
Mel Greaves, Carlo C Maley. Nature 2012
7


Next-generation characterization of the Cancer Cell Line Encyclopedia.
Mahmoud Ghandi, Franklin W Huang, Judit Jané-Valbuena, Gregory V Kryukov, Christopher C Lo, E Robert McDonald, Jordi Barretina, Ellen T Gelfand, Craig M Bielski, Haoxin Li,[...]. Nature 2019
883
7

Interplay between whole-genome doubling and the accumulation of deleterious alterations in cancer evolution.
Saioa López, Emilia L Lim, Stuart Horswell, Kerstin Haase, Ariana Huebner, Michelle Dietzen, Thanos P Mourikis, Thomas B K Watkins, Andrew Rowan, Sally M Dewhurst,[...]. Nat Genet 2020
61
11

Tetraploidy, aneuploidy and cancer.
Neil J Ganem, Zuzana Storchova, David Pellman. Curr Opin Genet Dev 2007
496
7

Cancer genome landscapes.
Bert Vogelstein, Nickolas Papadopoulos, Victor E Velculescu, Shibin Zhou, Luis A Diaz, Kenneth W Kinzler. Science 2013
7

Pan-cancer whole-genome analyses of metastatic solid tumours.
Peter Priestley, Jonathan Baber, Martijn P Lolkema, Neeltje Steeghs, Ewart de Bruijn, Charles Shale, Korneel Duyvesteyn, Susan Haidari, Arne van Hoeck, Wendy Onstenk,[...]. Nature 2019
279
7

The Immune Landscape of Cancer.
Vésteinn Thorsson, David L Gibbs, Scott D Brown, Denise Wolf, Dante S Bortone, Tai-Hsien Ou Yang, Eduard Porta-Pardo, Galen F Gao, Christopher L Plaisier, James A Eddy,[...]. Immunity 2018
6

Linking genomic reorganization to tumor initiation via the giant cell cycle.
N Niu, J Zhang, N Zhang, I Mercado-Uribe, F Tao, Z Han, S Pathak, A S Multani, J Kuang, J Yao,[...]. Oncogenesis 2016
69
8

Polyploid giant cancer cells: Unrecognized actuators of tumorigenesis, metastasis, and resistance.
Sarah R Amend, Gonzalo Torga, Ke-Chih Lin, Laurie G Kostecka, Angelo de Marzo, Robert H Austin, Kenneth J Pienta. Prostate 2019
60
10

From polyploidy to aneuploidy, genome instability and cancer.
Zuzana Storchova, David Pellman. Nat Rev Mol Cell Biol 2004
562
6

Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, Ahmedin Jemal. CA Cancer J Clin 2018
6

A mechanism linking extra centrosomes to chromosomal instability.
Neil J Ganem, Susana A Godinho, David Pellman. Nature 2009
947
6

Aneuploidy renders cancer cells vulnerable to mitotic checkpoint inhibition.
Yael Cohen-Sharir, James M McFarland, Mai Abdusamad, Carolyn Marquis, Sara V Bernhard, Mariya Kazachkova, Helen Tang, Marica R Ippolito, Kathrin Laue, Johanna Zerbib,[...]. Nature 2021
29
20

Cytokinesis failure triggers hippo tumor suppressor pathway activation.
Neil J Ganem, Hauke Cornils, Shang-Yi Chiu, Kevin P O'Rourke, Jonathan Arnaud, Dean Yimlamai, Manuel Théry, Fernando D Camargo, David Pellman. Cell 2014
234
6

Short- and long-term effects of chromosome mis-segregation and aneuploidy.
Stefano Santaguida, Angelika Amon. Nat Rev Mol Cell Biol 2015
284
6

Chromosome Mis-segregation Generates Cell-Cycle-Arrested Cells with Complex Karyotypes that Are Eliminated by the Immune System.
Stefano Santaguida, Amelia Richardson, Divya Ramalingam Iyer, Ons M'Saad, Lauren Zasadil, Kristin A Knouse, Yao Liang Wong, Nicholas Rhind, Arshad Desai, Angelika Amon. Dev Cell 2017
145
6

Tumor copy number alteration burden is a pan-cancer prognostic factor associated with recurrence and death.
Haley Hieronymus, Rajmohan Murali, Amy Tin, Kamlesh Yadav, Wassim Abida, Henrik Moller, Daniel Berney, Howard Scher, Brett Carver, Peter Scardino,[...]. Elife 2018
117
6

The Cancer Genome Atlas Pan-Cancer analysis project.
John N Weinstein, Eric A Collisson, Gordon B Mills, Kenna R Mills Shaw, Brad A Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M Stuart. Nat Genet 2013
6

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data.
Kai Wang, Mingyao Li, Hakon Hakonarson. Nucleic Acids Res 2010
6

Mutational landscape and significance across 12 major cancer types.
Cyriac Kandoth, Michael D McLellan, Fabio Vandin, Kai Ye, Beifang Niu, Charles Lu, Mingchao Xie, Qunyuan Zhang, Joshua F McMichael, Matthew A Wyczalkowski,[...]. Nature 2013
6

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
6

Chromosomal instability drives metastasis through a cytosolic DNA response.
Samuel F Bakhoum, Bryan Ngo, Ashley M Laughney, Julie-Ann Cavallo, Charles J Murphy, Peter Ly, Pragya Shah, Roshan K Sriram, Thomas B K Watkins, Neil K Taunk,[...]. Nature 2018
511
6

The causes and consequences of polyploidy in normal development and cancer.
Teresa Davoli, Titia de Lange. Annu Rev Cell Dev Biol 2011
271
6

The cancer genome.
Michael R Stratton, Peter J Campbell, P Andrew Futreal. Nature 2009
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.