A citation-based method for searching scientific literature

Huiling Yuan, Fujun Qin, Mercedeh Movassagh, Hong Park, Wendy Golden, Zhongqiu Xie, Peng Zhang, Jeffrey Sklar, Hui Li. Cancer Discov 2013
Times Cited: 57







List of co-cited articles
488 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells.
Hui Li, Jinglan Wang, Gil Mor, Jeffrey Sklar. Science 2008
204
66

Recurrent chimeric fusion RNAs in non-cancer tissues and cells.
Mihaela Babiceanu, Fujun Qin, Zhongqiu Xie, Yuemeng Jia, Kevin Lopez, Nick Janus, Loryn Facemire, Shailesh Kumar, Yuwei Pang, Yanjun Qi,[...]. Nucleic Acids Res 2016
105
59

Chimeric transcript generated by cis-splicing of adjacent genes regulates prostate cancer cell proliferation.
Yanmei Zhang, Mei Gong, Huiling Yuan, Hong G Park, Henry F Frierson, Hui Li. Cancer Discov 2012
98
54

Discovery of CTCF-sensitive Cis-spliced fusion RNAs between adjacent genes in human prostate cells.
Fujun Qin, Zhenguo Song, Mihaela Babiceanu, Yansu Song, Loryn Facemire, Ritambhara Singh, Mazhar Adli, Hui Li. PLoS Genet 2015
59
45

SLC45A3-ELK4 is a novel and frequent erythroblast transformation-specific fusion transcript in prostate cancer.
David S Rickman, Dorothee Pflueger, Benjamin Moss, Vanessa E VanDoren, Chen X Chen, Alexandre de la Taille, Rainer Kuefer, Ashutosh K Tewari, Sunita R Setlur, Francesca Demichelis,[...]. Cancer Res 2009
145
38

Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency.
Chan-Shuo Wu, Chun-Ying Yu, Ching-Yu Chuang, Michael Hsiao, Cheng-Fu Kao, Hung-Chih Kuo, Trees-Juen Chuang. Genome Res 2014
71
36

Transcriptome sequencing to detect gene fusions in cancer.
Christopher A Maher, Chandan Kumar-Sinha, Xuhong Cao, Shanker Kalyana-Sundaram, Bo Han, Xiaojun Jing, Lee Sam, Terrence Barrette, Nallasivam Palanisamy, Arul M Chinnaiyan. Nature 2009
590
35

Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples.
Serban Nacu, Wenlin Yuan, Zhengyan Kan, Deepali Bhatt, Celina Sanchez Rivers, Jeremy Stinson, Brock A Peters, Zora Modrusan, Kenneth Jung, Somasekar Seshagiri,[...]. BMC Med Genomics 2011
113
29

Transcription-mediated gene fusion in the human genome.
Pinchas Akiva, Amir Toporik, Sarit Edelheit, Yifat Peretz, Alex Diber, Ronen Shemesh, Amit Novik, Rotem Sorek. Genome Res 2006
208
29

Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.
Scott A Tomlins, Daniel R Rhodes, Sven Perner, Saravana M Dhanasekaran, Rohit Mehra, Xiao-Wei Sun, Sooryanarayana Varambally, Xuhong Cao, Joelle Tchinda, Rainer Kuefer,[...]. Science 2005
29

Intergenic mRNA molecules resulting from trans-splicing.
Csaba Finta, Peter G Zaphiropoulos. J Biol Chem 2002
113
28

Gene fusions and RNA trans-splicing in normal and neoplastic human cells.
Hui Li, Jinglan Wang, Xianyong Ma, Jeffrey Sklar. Cell Cycle 2009
65
28

SLC45A3-ELK4 chimera in prostate cancer: spotlight on cis-splicing.
Chandan Kumar-Sinha, Shanker Kalyana-Sundaram, Arul M Chinnaiyan. Cancer Discov 2012
34
44


Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing.
Kalpana Kannan, Liguo Wang, Jianghua Wang, Michael M Ittmann, Wei Li, Laising Yen. Proc Natl Acad Sci U S A 2011
130
26

Fusion transcriptome profiling provides insights into alveolar rhabdomyosarcoma.
Zhongqiu Xie, Mihaela Babiceanu, Shailesh Kumar, Yuemeng Jia, Fujun Qin, Frederic G Barr, Hui Li. Proc Natl Acad Sci U S A 2016
29
51



Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer.
Manabu Soda, Young Lim Choi, Munehiro Enomoto, Shuji Takada, Yoshihiro Yamashita, Shunpei Ishikawa, Shin-ichiro Fujiwara, Hideki Watanabe, Kentaro Kurashina, Hisashi Hatanaka,[...]. Nature 2007
24

TFG, a target of chromosome translocations in lymphoma and soft tissue tumors, fuses to GPR128 in healthy individuals.
Andrew Chase, Thomas Ernst, Andreas Fiebig, Andrew Collins, Francis Grand, Philipp Erben, Andreas Reiter, Stefan Schreiber, Nicholas C P Cross. Haematologica 2010
45
31

Chimeric RNAs generated by intergenic splicing in normal and cancer cells.
Kasey Jividen, Hui Li. Genes Chromosomes Cancer 2014
51
27

Recurrent cis-SAGe chimeric RNA, D2HGDH-GAL3ST2, in prostate cancer.
Fujun Qin, Zhenguo Song, Maxwell Chang, Yansu Song, Henry Frierson, Hui Li. Cancer Lett 2016
26
53

Intergenically Spliced Chimeric RNAs in Cancer.
Yuemeng Jia, Zhongqiu Xie, Hui Li. Trends Cancer 2016
51
27

Chimeric RNAs in cancer and normal physiology.
Katarzyna Chwalenia, Loryn Facemire, Hui Li. Wiley Interdiscip Rev RNA 2017
32
43

Effect of crizotinib on overall survival in patients with advanced non-small-cell lung cancer harbouring ALK gene rearrangement: a retrospective analysis.
Alice T Shaw, Beow Y Yeap, Benjamin J Solomon, Gregory J Riely, Justin Gainor, Jeffrey A Engelman, Geoffrey I Shapiro, Daniel B Costa, Sai-Hong I Ou, Mohit Butaney,[...]. Lancet Oncol 2011
693
22

Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript.
Matteo Benelli, Chiara Pescucci, Giuseppina Marseglia, Marco Severgnini, Francesca Torricelli, Alberto Magi. Bioinformatics 2012
99
22

Recurrent fusion RNA DUS4L-BCAP29 in non-cancer human tissues and cells.
Yue Tang, Fujun Qin, Aiqun Liu, Hui Li. Oncotarget 2017
25
52

Molecular screening for new fusion genes in cancer.
Sverre Heim, Felix Mitelman. Nat Genet 2008
30
40

The impact of translocations and gene fusions on cancer causation.
Felix Mitelman, Bertil Johansson, Fredrik Mertens. Nat Rev Cancer 2007
892
21

SLC45A3-ELK4 functions as a long non-coding chimeric RNA.
Fujun Qin, Yanmei Zhang, Jia Liu, Hui Li. Cancer Lett 2017
26
46


Transgene analysis proves mRNA trans-splicing at the complex mod(mdg4) locus in Drosophila.
R Dorn, G Reuter, A Loewendorf. Proc Natl Acad Sci U S A 2001
89
19

Transcription-mediated chimeric RNAs in prostate cancer: time to revisit old hypothesis?
Guoping Ren, Yanling Zhang, Xueying Mao, Xiaoyan Liu, Emma Mercer, Jacek Marzec, Dong Ding, Yurong Jiao, Qingchong Qiu, Yue Sun,[...]. OMICS 2014
26
42

Recurrent reciprocal RNA chimera involving YPEL5 and PPP1CB in chronic lymphocytic leukemia.
Thirunavukkarasu Velusamy, Nallasivam Palanisamy, Shanker Kalyana-Sundaram, Anagh Anant Sahasrabuddhe, Christopher A Maher, Daniel R Robinson, David W Bahler, Timothy T Cornell, Thomas E Wilson, Megan S Lim,[...]. Proc Natl Acad Sci U S A 2013
33
30

SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data.
Wenlong Jia, Kunlong Qiu, Minghui He, Pengfei Song, Quan Zhou, Feng Zhou, Yuan Yu, Dandan Zhu, Michael L Nickerson, Shengqing Wan,[...]. Genome Biol 2013
128
17

Role of CTCF in Regulating SLC45A3-ELK4 Chimeric RNA.
Fujun Qin, Yansu Song, Yanmei Zhang, Loryn Facemire, Henry Frierson, Hui Li. PLoS One 2016
16
62

Comparative assessment of methods for the fusion transcripts detection from RNA-Seq data.
Shailesh Kumar, Angie Duy Vo, Fujun Qin, Hui Li. Sci Rep 2016
90
17

Chimeric RNAs and their implications in cancer.
Zi Li, Fujun Qin, Hui Li. Curr Opin Genet Dev 2018
20
50

The landscape of chimeric RNAs in non-diseased tissues and cells.
Sandeep Singh, Fujun Qin, Shailesh Kumar, Justin Elfman, Emily Lin, Lam-Phong Pham, Amy Yang, Hui Li. Nucleic Acids Res 2020
21
47

PAX3/FOXO1 fusion gene status is the key prognostic molecular marker in rhabdomyosarcoma and significantly improves current risk stratification.
Edoardo Missiaglia, Dan Williamson, Julia Chisholm, Pratyaksha Wirapati, Gaëlle Pierron, Fabien Petel, Jean-Paul Concordet, Khin Thway, Odile Oberlin, Kathy Pritchard-Jones,[...]. J Clin Oncol 2012
197
15


Tandem chimerism as a means to increase protein complexity in the human genome.
Genís Parra, Alexandre Reymond, Noura Dabbouseh, Emmanouil T Dermitzakis, Robert Castelo, Timothy M Thomson, Stylianos E Antonarakis, Roderic Guigó. Genome Res 2006
154
15

The landscape of kinase fusions in cancer.
Nicolas Stransky, Ethan Cerami, Stefanie Schalm, Joseph L Kim, Christoph Lengauer. Nat Commun 2014
574
15

Expression of conjoined genes: another mechanism for gene regulation in eukaryotes.
Tulika Prakash, Vineet K Sharma, Naoki Adati, Ritsuko Ozawa, Naveen Kumar, Yuichiro Nishida, Takayoshi Fujikake, Tadayuki Takeda, Todd D Taylor. PLoS One 2010
73
15

Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.
Milana Frenkel-Morgenstern, Vincent Lacroix, Iakes Ezkurdia, Yishai Levin, Alexandra Gabashvili, Jaime Prilusky, Angela Del Pozo, Michael Tress, Rory Johnson, Roderic Guigo,[...]. Genome Res 2012
101
15

PAX3-FOXO1 fusion gene in rhabdomyosarcoma.
Corinne M Linardic. Cancer Lett 2008
90
15

Recurrent read-through fusion transcripts in breast cancer.
Katherine E Varley, Jason Gertz, Brian S Roberts, Nicholas S Davis, Kevin M Bowling, Marie K Kirby, Amy S Nesmith, Patsy G Oliver, William E Grizzle, Andres Forero,[...]. Breast Cancer Res Treat 2014
106
15

ChiTaRS-3.1-the enhanced chimeric transcripts and RNA-seq database matched with protein-protein interactions.
Alessandro Gorohovski, Somnath Tagore, Vikrant Palande, Assaf Malka, Dorith Raviv-Shay, Milana Frenkel-Morgenstern. Nucleic Acids Res 2017
32
28

The Landscape and Implications of Chimeric RNAs in Cervical Cancer.
Peng Wu, Shuo Yang, Sandeep Singh, Fujun Qin, Shailesh Kumar, Ling Wang, Ding Ma, Hui Li. EBioMedicine 2018
21
42

RNA-mediated epigenetic programming of a genome-rearrangement pathway.
Mariusz Nowacki, Vikram Vijayan, Yi Zhou, Klaas Schotanus, Thomas G Doak, Laura F Landweber. Nature 2008
173
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.