A citation-based method for searching scientific literature

Jill A Dembowski, Madhumitha Ramesh, C Joel McManus, John L Woolford. RNA 2013
Times Cited: 20







List of co-cited articles
328 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
718
75

Ribosome biogenesis in the yeast Saccharomyces cerevisiae.
John L Woolford, Susan J Baserga. Genetics 2013
431
70

Yeast ribosomal protein L7 and its homologue Rlp7 are simultaneously present at distinct sites on pre-60S ribosomal particles.
Reyes Babiano, Gwenael Badis, Cosmin Saveanu, Abdelkader Namane, Antonia Doyen, Antonio Díaz-Quintana, Alain Jacquier, Micheline Fromont-Racine, Jesús de la Cruz. Nucleic Acids Res 2013
19
68

Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes.
Jingyu Zhang, Piyanun Harnpicharnchai, Jelena Jakovljevic, Lan Tang, Yurong Guo, Marlene Oeffinger, Michael P Rout, Shawna L Hiley, Timothy Hughes, John L Woolford. Genes Dev 2007
138
60

Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre-rRNA processing.
Aarti Sahasranaman, Jill Dembowski, John Strahler, Philip Andrews, Janine Maddock, John L Woolford. EMBO J 2011
70
60

Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes.
Shan Wu, Beril Tutuncuoglu, Kaige Yan, Hailey Brown, Yixiao Zhang, Dan Tan, Michael Gamalinda, Yi Yuan, Zhifei Li, Jelena Jakovljevic,[...]. Nature 2016
112
60

A hierarchical model for assembly of eukaryotic 60S ribosomal subunit domains.
Michael Gamalinda, Uli Ohmayer, Jelena Jakovljevic, Beril Kumcuoglu, Joshua Woolford, Bertrade Mbom, Lawrence Lin, John L Woolford. Genes Dev 2014
77
55

Structure of the pre-60S ribosomal subunit with nuclear export factor Arx1 bound at the exit tunnel.
Bettina Bradatsch, Christoph Leidig, Sander Granneman, Marén Gnädig, David Tollervey, Bettina Böttcher, Roland Beckmann, Ed Hurt. Nat Struct Mol Biol 2012
85
55

Hierarchical recruitment into nascent ribosomes of assembly factors required for 27SB pre-rRNA processing in Saccharomyces cerevisiae.
Jason Talkish, Jingyu Zhang, Jelena Jakovljevic, Edward W Horsey, John L Woolford. Nucleic Acids Res 2012
46
50

Ribosomal proteins L7 and L8 function in concert with six A₃ assembly factors to propagate assembly of domains I and II of 25S rRNA in yeast 60S ribosomal subunits.
Jelena Jakovljevic, Uli Ohmayer, Michael Gamalinda, Jason Talkish, Lisa Alexander, Jan Linnemann, Philipp Milkereit, John L Woolford. RNA 2012
47
50

Ribosome assembly factors Pwp1 and Nop12 are important for folding of 5.8S rRNA during ribosome biogenesis in Saccharomyces cerevisiae.
Jason Talkish, Ian Winsten Campbell, Aarti Sahasranaman, Jelena Jakovljevic, John L Woolford. Mol Cell Biol 2014
23
50

Yeast polypeptide exit tunnel ribosomal proteins L17, L35 and L37 are necessary to recruit late-assembling factors required for 27SB pre-rRNA processing.
Michael Gamalinda, Jelena Jakovljevic, Reyes Babiano, Jason Talkish, Jesús de la Cruz, John L Woolford. Nucleic Acids Res 2013
39
45

Rrp5p, Noc1p and Noc2p form a protein module which is part of early large ribosomal subunit precursors in S. cerevisiae.
Thomas Hierlmeier, Juliane Merl, Martina Sauert, Jorge Perez-Fernandez, Patrick Schultz, Astrid Bruckmann, Stephan Hamperl, Uli Ohmayer, Reinhard Rachel, Anja Jacob,[...]. Nucleic Acids Res 2013
40
45

Rrp5 binding at multiple sites coordinates pre-rRNA processing and assembly.
Simon Lebaron, Asa Segerstolpe, Sarah L French, Tatiana Dudnakova, Flavia de Lima Alves, Sander Granneman, Juri Rappsilber, Ann L Beyer, Lars Wieslander, David Tollervey. Mol Cell 2013
41
45

60S ribosome biogenesis requires rotation of the 5S ribonucleoprotein particle.
Christoph Leidig, Matthias Thoms, Iris Holdermann, Bettina Bradatsch, Otto Berninghausen, Gert Bange, Irmgard Sinning, Ed Hurt, Roland Beckmann. Nat Commun 2014
89
45

Nsa2 is an unstable, conserved factor required for the maturation of 27 SB pre-rRNAs.
Alice Lebreton, Cosmin Saveanu, Laurence Decourty, Alain Jacquier, Micheline Fromont-Racine. J Biol Chem 2006
39
40

Has1 regulates consecutive maturation and processing steps for assembly of 60S ribosomal subunits.
Jill A Dembowski, Benjamin Kuo, John L Woolford. Nucleic Acids Res 2013
34
40

Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6.
Sebastian Klinge, Felix Voigts-Hoffmann, Marc Leibundgut, Sofia Arpagaus, Nenad Ban. Science 2011
243
40


Cryo-EM structures of Arx1 and maturation factors Rei1 and Jjj1 bound to the 60S ribosomal subunit.
Basil J Greber, Daniel Boehringer, Christian Montellese, Nenad Ban. Nat Struct Mol Biol 2012
72
40

Studies on the assembly characteristics of large subunit ribosomal proteins in S. cerevisae.
Uli Ohmayer, Michael Gamalinda, Martina Sauert, Julius Ossowski, Gisela Pöll, Jan Linnemann, Thomas Hierlmeier, Jorge Perez-Fernandez, Beril Kumcuoglu, Isabelle Leger-Silvestre,[...]. PLoS One 2013
38
40

The Exosome Is Recruited to RNA Substrates through Specific Adaptor Proteins.
Matthias Thoms, Emma Thomson, Jochen Baßler, Marén Gnädig, Sabine Griesel, Ed Hurt. Cell 2015
112
40

Architecture of the Rix1-Rea1 checkpoint machinery during pre-60S-ribosome remodeling.
Clara Barrio-Garcia, Matthias Thoms, Dirk Flemming, Lukas Kater, Otto Berninghausen, Jochen Baßler, Roland Beckmann, Ed Hurt. Nat Struct Mol Biol 2016
66
40

Nog2p, a putative GTPase associated with pre-60S subunits and required for late 60S maturation steps.
C Saveanu, D Bienvenu, A Namane, P E Gleizes, N Gas, A Jacquier, M Fromont-Racine. EMBO J 2001
151
35

The post-transcriptional steps of eukaryotic ribosome biogenesis.
A K Henras, J Soudet, M Gérus, S Lebaron, M Caizergues-Ferrer, A Mougin, Y Henry. Cell Mol Life Sci 2008
408
35

rRNA maturation in yeast cells depleted of large ribosomal subunit proteins.
Gisela Pöll, Tobias Braun, Jelena Jakovljevic, Andreas Neueder, Steffen Jakob, John L Woolford, Herbert Tschochner, Philipp Milkereit. PLoS One 2009
70
35

Ytm1, Nop7, and Erb1 form a complex necessary for maturation of yeast 66S preribosomes.
Tiffany D Miles, Jelena Jakovljevic, Edward W Horsey, Piyanun Harnpicharnchai, Lan Tang, John L Woolford. Mol Cell Biol 2005
74
35

Saccharomyces cerevisiae ribosomal protein L26 is not essential for ribosome assembly and function.
Reyes Babiano, Michael Gamalinda, John L Woolford, Jesús de la Cruz. Mol Cell Biol 2012
40
35

The AAA-ATPase Rea1 drives removal of biogenesis factors during multiple stages of 60S ribosome assembly.
Jochen Bassler, Martina Kallas, Brigitte Pertschy, Cornelia Ulbrich, Matthias Thoms, Ed Hurt. Mol Cell 2010
79
35

Pre-18S ribosomal RNA is structurally compacted into the SSU processome prior to being cleaved from nascent transcripts in Saccharomyces cerevisiae.
Yvonne N Osheim, Sarah L French, Kristin M Keck, Erica A Champion, Krasimir Spasov, François Dragon, Susan J Baserga, Ann L Beyer. Mol Cell 2004
194
35

Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export.
Yoshitaka Matsuo, Sander Granneman, Matthias Thoms, Rizos-Georgios Manikas, David Tollervey, Ed Hurt. Nature 2014
90
35


Processing of preribosomal RNA in Saccharomyces cerevisiae.
Antonio Fernández-Pevida, Dieter Kressler, Jesús de la Cruz. Wiley Interdiscip Rev RNA 2015
57
35

Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo.
Jesus de la Cruz, Katrin Karbstein, John L Woolford. Annu Rev Biochem 2015
175
35

Insertion of the Biogenesis Factor Rei1 Probes the Ribosomal Tunnel during 60S Maturation.
Basil Johannes Greber, Stefan Gerhardy, Alexander Leitner, Marc Leibundgut, Michèle Salem, Daniel Boehringer, Nicolas Leulliot, Ruedi Aebersold, Vikram Govind Panse, Nenad Ban. Cell 2016
64
35

Sequential protein association with nascent 60S ribosomal particles.
Cosmin Saveanu, Abdelkader Namane, Pierre-Emmanuel Gleizes, Alice Lebreton, Jean-Claude Rousselle, Jacqueline Noaillac-Depeyre, Nicole Gas, Alain Jacquier, Micheline Fromont-Racine. Mol Cell Biol 2003
157
30

Assembly of bacterial ribosomes.
Zahra Shajani, Michael T Sykes, James R Williamson. Annu Rev Biochem 2011
288
30

Composition and functional characterization of yeast 66S ribosome assembly intermediates.
P Harnpicharnchai, J Jakovljevic, E Horsey, T Miles, J Roman, M Rout, D Meagher, B Imai, Y Guo, C J Brame,[...]. Mol Cell 2001
244
30

Driving ribosome assembly.
Dieter Kressler, Ed Hurt, Jochen Bassler. Biochim Biophys Acta 2010
332
30

Ribosome assembly factors prevent premature translation initiation by 40S assembly intermediates.
Bethany S Strunk, Cherisse R Loucks, Min Su, Harish Vashisth, Shanshan Cheng, Justin Schilling, Charles L Brooks, Katrin Karbstein, Georgios Skiniotis. Science 2011
154
30

Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast.
Colette A Côté, Chris L Greer, Brenda A Peculis. RNA 2002
77
30

60S ribosomal subunit assembly dynamics defined by semi-quantitative mass spectrometry of purified complexes.
Alice Lebreton, Jean-Claude Rousselle, Pascal Lenormand, Abdelkader Namane, Alain Jacquier, Micheline Fromont-Racine, Cosmin Saveanu. Nucleic Acids Res 2008
42
30

One core, two shells: bacterial and eukaryotic ribosomes.
Sergey Melnikov, Adam Ben-Shem, Nicolas Garreau de Loubresse, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Nat Struct Mol Biol 2012
225
30

Coordinated Ribosomal L4 Protein Assembly into the Pre-Ribosome Is Regulated by Its Eukaryote-Specific Extension.
Philipp Stelter, Ferdinand M Huber, Ruth Kunze, Dirk Flemming, André Hoelz, Ed Hurt. Mol Cell 2015
45
30

A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation.
Jochen Baßler, Helge Paternoga, Iris Holdermann, Matthias Thoms, Sander Granneman, Clara Barrio-Garcia, Afua Nyarko, Woonghee Lee, Gunter Stier, Sarah A Clark,[...]. J Cell Biol 2014
37
30

A new system for naming ribosomal proteins.
Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton,[...]. Curr Opin Struct Biol 2014
322
30

Mechanism of eIF6 release from the nascent 60S ribosomal subunit.
Félix Weis, Emmanuel Giudice, Mark Churcher, Li Jin, Christine Hilcenko, Chi C Wong, David Traynor, Robert R Kay, Alan J Warren. Nat Struct Mol Biol 2015
105
30

60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm.
Tracy A Nissan, Jochen Bassler, Elisabeth Petfalski, David Tollervey, Ed Hurt. EMBO J 2002
279
25

Rlp7p is associated with 60S preribosomes, restricted to the granular component of the nucleolus, and required for pre-rRNA processing.
Olivier Gadal, Daniela Strauss, Elisabeth Petfalski, Pierre-Emmanuel Gleizes, Nicole Gas, David Tollervey, Ed Hurt. J Cell Biol 2002
62
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.