A citation-based method for searching scientific literature

Stefan M Bresson, Nicholas K Conrad. PLoS Genet 2013
Times Cited: 75







List of co-cited articles
971 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Polyadenylation-dependent control of long noncoding RNA expression by the poly(A)-binding protein nuclear 1.
Yves B Beaulieu, Claudia L Kleinman, Anne-Marie Landry-Voyer, Jacek Majewski, François Bachand. PLoS Genet 2012
99
58

Interaction profiling identifies the human nuclear exosome targeting complex.
Michal Lubas, Marianne S Christensen, Maiken S Kristiansen, Michal Domanski, Lasse G Falkenby, Søren Lykke-Andersen, Jens S Andersen, Andrzej Dziembowski, Torben Heick Jensen. Mol Cell 2011
258
40

Identification of a Nuclear Exosome Decay Pathway for Processed Transcripts.
Nicola Meola, Michal Domanski, Evdoxia Karadoulama, Yun Chen, Coline Gentil, Dennis Pultz, Kristoffer Vitting-Seerup, Søren Lykke-Andersen, Jens S Andersen, Albin Sandelin,[...]. Mol Cell 2016
113
34

The human cap-binding complex is functionally connected to the nuclear RNA exosome.
Peter Refsing Andersen, Michal Domanski, Maiken S Kristiansen, Helena Storvall, Evgenia Ntini, Celine Verheggen, Aleks Schein, Jakob Bunkenborg, Ina Poser, Marie Hallais,[...]. Nat Struct Mol Biol 2013
142
30

Canonical Poly(A) Polymerase Activity Promotes the Decay of a Wide Variety of Mammalian Nuclear RNAs.
Stefan M Bresson, Olga V Hunter, Allyson C Hunter, Nicholas K Conrad. PLoS Genet 2015
54
42


The poly(A)-binding protein nuclear 1 suppresses alternative cleavage and polyadenylation sites.
Mathias Jenal, Ran Elkon, Fabricio Loayza-Puch, Gijs van Haaften, Uwe Kühn, Fiona M Menzies, Joachim A F Oude Vrielink, Arnold J Bos, Jarno Drost, Koos Rooijers,[...]. Cell 2012
216
25

The human nuclear exosome targeting complex is loaded onto newly synthesized RNA to direct early ribonucleolysis.
Michal Lubas, Peter Refsing Andersen, Aleks Schein, Andrzej Dziembowski, Grzegorz Kudla, Torben Heick Jensen. Cell Rep 2015
103
25

Loss of nuclear poly(A)-binding protein 1 causes defects in myogenesis and mRNA biogenesis.
Luciano H Apponi, Sara W Leung, Kathryn R Williams, Sandro R Valentini, Anita H Corbett, Grace K Pavlath. Hum Mol Genet 2010
80
22

A Pre-mRNA degradation pathway that selectively targets intron-containing genes requires the nuclear poly(A)-binding protein.
Caroline Lemieux, Samuel Marguerat, Jennifer Lafontaine, Nicolas Barbezier, Jürg Bähler, Francois Bachand. Mol Cell 2011
79
22

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase.
Françoise Wyers, Mathieu Rougemaille, Gwenaël Badis, Jean-Claude Rousselle, Marie-Elisabeth Dufour, Jocelyne Boulay, Béatrice Régnault, Frédéric Devaux, Abdelkader Namane, Bertrand Séraphin,[...]. Cell 2005
650
21

RNA exosome depletion reveals transcription upstream of active human promoters.
Pascal Preker, Jesper Nielsen, Susanne Kammler, Søren Lykke-Andersen, Marianne S Christensen, Christophe K Mapendano, Mikkel H Schierup, Torben Heick Jensen. Science 2008
519
21

The regulation and functions of the nuclear RNA exosome complex.
Cornelia Kilchert, Sina Wittmann, Lidia Vasiljeva. Nat Rev Mol Cell Biol 2016
175
21

CBC-ARS2 stimulates 3'-end maturation of multiple RNA families and favors cap-proximal processing.
Marie Hallais, Frédéric Pontvianne, Peter Refsing Andersen, Marcello Clerici, Daniela Lener, Nour El Houda Benbahouche, Thierry Gostan, Franck Vandermoere, Marie-Cécile Robert, Stephen Cusack,[...]. Nat Struct Mol Biol 2013
97
20

Poly(A) binding protein nuclear 1 levels affect alternative polyadenylation.
Eleonora de Klerk, Andrea Venema, S Yahya Anvar, Jelle J Goeman, Ouhua Hu, Capucine Trollet, George Dickson, Johan T den Dunnen, Silvère M van der Maarel, Vered Raz,[...]. Nucleic Acids Res 2012
105
20

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex.
John LaCava, Jonathan Houseley, Cosmin Saveanu, Elisabeth Petfalski, Elizabeth Thompson, Alain Jacquier, David Tollervey. Cell 2005
667
20

Stimulation of poly(A) polymerase through a direct interaction with the nuclear poly(A) binding protein allosterically regulated by RNA.
Yvonne Kerwitz, Uwe Kühn, Hauke Lilie, Anne Knoth, Till Scheuermann, Henning Friedrich, Elisabeth Schwarz, Elmar Wahle. EMBO J 2003
109
18

The nuclear poly(A)-binding protein interacts with the exosome to promote synthesis of noncoding small nucleolar RNAs.
Jean-François Lemay, Annie D'Amours, Caroline Lemieux, Daniel H Lackner, Valérie G St-Sauveur, Jürg Bähler, François Bachand. Mol Cell 2010
82
18


Exosome cofactor hMTR4 competes with export adaptor ALYREF to ensure balanced nuclear RNA pools for degradation and export.
Jing Fan, Bin Kuai, Guifen Wu, Xudong Wu, Binkai Chi, Lantian Wang, Ke Wang, Zhubing Shi, Heng Zhang, She Chen,[...]. EMBO J 2017
46
28

An Mtr4/ZFC3H1 complex facilitates turnover of unstable nuclear RNAs to prevent their cytoplasmic transport and global translational repression.
Koichi Ogami, Patricia Richard, Yaqiong Chen, Mainul Hoque, Wencheng Li, James J Moresco, John R Yates, Bin Tian, James L Manley. Genes Dev 2017
49
26

Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality.
Evgenia Ntini, Aino I Järvelin, Jette Bornholdt, Yun Chen, Mette Boyd, Mette Jørgensen, Robin Andersson, Ilka Hoof, Aleks Schein, Peter R Andersen,[...]. Nat Struct Mol Biol 2013
176
16

Formation of triple-helical structures by the 3'-end sequences of MALAT1 and MENβ noncoding RNAs.
Jessica A Brown, Max L Valenstein, Therese A Yario, Kazimierz T Tycowski, Joan A Steitz. Proc Natl Acad Sci U S A 2012
165
16

Molecular basis for coordinating transcription termination with noncoding RNA degradation.
Agnieszka Tudek, Odil Porrua, Tomasz Kabzinski, Michael Lidschreiber, Karel Kubicek, Andrea Fortova, François Lacroute, Stepanka Vanacova, Patrick Cramer, Richard Stefl,[...]. Mol Cell 2014
68
17

Regulated Intron Retention and Nuclear Pre-mRNA Decay Contribute to PABPN1 Autoregulation.
Danny Bergeron, Gheorghe Pal, Yves B Beaulieu, Benoit Chabot, François Bachand. Mol Cell Biol 2015
41
29

RNA decay machines: the exosome.
Aleksander Chlebowski, Michał Lubas, Torben Heick Jensen, Andrzej Dziembowski. Biochim Biophys Acta 2013
150
14

A new yeast poly(A) polymerase complex involved in RNA quality control.
Stepánka Vanácová, Jeannette Wolf, Georges Martin, Diana Blank, Sabine Dettwiler, Arno Friedlein, Hanno Langen, Gérard Keith, Walter Keller. PLoS Biol 2005
451
14

Short GCG expansions in the PABP2 gene cause oculopharyngeal muscular dystrophy.
B Brais, J P Bouchard, Y G Xie, D L Rochefort, N Chrétien, F M Tomé, R G Lafrenière, J M Rommens, E Uyama, O Nohira,[...]. Nat Genet 1998
556
14

Extensive degradation of RNA precursors by the exosome in wild-type cells.
Rajani Kanth Gudipati, Zhenyu Xu, Alice Lebreton, Bertrand Séraphin, Lars M Steinmetz, Alain Jacquier, Domenico Libri. Mol Cell 2012
165
14

Poly(A) tail recognition by a viral RNA element through assembly of a triple helix.
Rachel M Mitton-Fry, Suzanne J DeGregorio, Jimin Wang, Thomas A Steitz, Joan A Steitz. Science 2010
112
14

RBM7 subunit of the NEXT complex binds U-rich sequences and targets 3'-end extended forms of snRNAs.
Dominika Hrossova, Tomas Sikorsky, David Potesil, Marek Bartosovic, Josef Pasulka, Zbynek Zdrahal, Richard Stefl, Stepanka Vanacova. Nucleic Acids Res 2015
35
31

The fission yeast MTREC complex targets CUTs and unspliced pre-mRNAs to the nuclear exosome.
Yang Zhou, Jianguo Zhu, Géza Schermann, Corina Ohle, Katja Bendrin, Rie Sugioka-Sugiyama, Tomoyasu Sugiyama, Tamás Fischer. Nat Commun 2015
59
18

Promoter directionality is controlled by U1 snRNP and polyadenylation signals.
Albert E Almada, Xuebing Wu, Andrea J Kriz, Christopher B Burge, Phillip A Sharp. Nature 2013
265
13



Nuclear inclusions in oculopharyngeal muscular dystrophy consist of poly(A) binding protein 2 aggregates which sequester poly(A) RNA.
A Calado, F M Tomé, B Brais, G A Rouleau, U Kühn, E Wahle, M Carmo-Fonseca. Hum Mol Genet 2000
180
13

A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails.
Jeremy E Wilusz, Courtney K JnBaptiste, Laura Y Lu, Claus-D Kuhn, Leemor Joshua-Tor, Phillip A Sharp. Genes Dev 2012
254
13

An essential cytoplasmic function for the nuclear poly(A) binding protein, PABP2, in poly(A) tail length control and early development in Drosophila.
Béatrice Benoit, Géraldine Mitou, Aymeric Chartier, Claudia Temme, Sophie Zaessinger, Elmar Wahle, Isabelle Busseau, Martine Simonelig. Dev Cell 2005
78
13

Identification of a regulated pathway for nuclear pre-mRNA turnover.
C Bousquet-Antonelli, C Presutti, D Tollervey. Cell 2000
309
13

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
13

An atlas of active enhancers across human cell types and tissues.
Robin Andersson, Claudia Gebhard, Irene Miguel-Escalada, Ilka Hoof, Jette Bornholdt, Mette Boyd, Yun Chen, Xiaobei Zhao, Christian Schmidl, Takahiro Suzuki,[...]. Nature 2014
13

The nuclear RNA polymerase II surveillance system targets polymerase III transcripts.
Wiebke Wlotzka, Grzegorz Kudla, Sander Granneman, David Tollervey. EMBO J 2011
136
13

Importance of polyadenylation in the selective elimination of meiotic mRNAs in growing S. pombe cells.
Soichiro Yamanaka, Akira Yamashita, Yuriko Harigaya, Ryo Iwata, Masayuki Yamamoto. EMBO J 2010
88
13

Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance.
Nathan N Lee, Venkata R Chalamcharla, Francisca Reyes-Turcu, Sameet Mehta, Martin Zofall, Vanivilasini Balachandran, Jothy Dhakshnamoorthy, Nitika Taneja, Soichiro Yamanaka, Ming Zhou,[...]. Cell 2013
114
13


A Polyadenylation-Dependent 3' End Maturation Pathway Is Required for the Synthesis of the Human Telomerase RNA.
Duy Nguyen, Valérie Grenier St-Sauveur, Danny Bergeron, Fabien Dupuis-Sandoval, Michelle S Scott, François Bachand. Cell Rep 2015
70
14

Mutually Exclusive CBC-Containing Complexes Contribute to RNA Fate.
Simone Giacometti, Nour El Houda Benbahouche, Michal Domanski, Marie-Cécile Robert, Nicola Meola, Michal Lubas, Jakob Bukenborg, Jens S Andersen, Wiebke M Schulze, Celine Verheggen,[...]. Cell Rep 2017
39
25

Control of poly(A) tail length.
Christian R Eckmann, Christiane Rammelt, Elmar Wahle. Wiley Interdiscip Rev RNA 2011
139
12

Nuclear RNA surveillance: role of TRAMP in controlling exosome specificity.
Karyn Schmidt, J Scott Butler. Wiley Interdiscip Rev RNA 2013
63
14

Endonucleolytic RNA cleavage by a eukaryotic exosome.
Alice Lebreton, Rafal Tomecki, Andrzej Dziembowski, Bertrand Séraphin. Nature 2008
238
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.