A citation-based method for searching scientific literature

Pascal-Antoine Christin, Susanna F Boxall, Richard Gregory, Erika J Edwards, James Hartwell, Colin P Osborne. Genome Biol Evol 2013
Times Cited: 47







List of co-cited articles
417 articles co-cited >1



Times Cited
  Times     Co-cited
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The C(4) plant lineages of planet Earth.
Rowan F Sage, Pascal-Antoine Christin, Erika J Edwards. J Exp Bot 2011
294
65

Photorespiration and the evolution of C4 photosynthesis.
Rowan F Sage, Tammy L Sage, Ferit Kocacinar. Annu Rev Plant Biol 2012
363
55

The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria.
Julia Mallmann, David Heckmann, Andrea Bräutigam, Martin J Lercher, Andreas P M Weber, Peter Westhoff, Udo Gowik. Elife 2014
119
42

Predicting C4 photosynthesis evolution: modular, individually adaptive steps on a Mount Fuji fitness landscape.
David Heckmann, Stefanie Schulze, Alisandra Denton, Udo Gowik, Peter Westhoff, Andreas P M Weber, Martin J Lercher. Cell 2013
119
40

The role of proteins in C(3) plants prior to their recruitment into the C(4) pathway.
Sylvain Aubry, Naomi J Brown, Julian M Hibberd. J Exp Bot 2011
93
38

An mRNA blueprint for C4 photosynthesis derived from comparative transcriptomics of closely related C3 and C4 species.
Andrea Bräutigam, Kaisa Kajala, Julia Wullenweber, Manuel Sommer, David Gagneul, Katrin L Weber, Kevin M Carr, Udo Gowik, Janina Mass, Martin J Lercher,[...]. Plant Physiol 2011
162
38

The regulation of gene expression required for C4 photosynthesis.
Julian M Hibberd, Sarah Covshoff. Annu Rev Plant Biol 2010
152
38

Independent and parallel recruitment of preexisting mechanisms underlying C₄ photosynthesis.
Naomi J Brown, Christine A Newell, Susan Stanley, Jit E Chen, Abigail J Perrin, Kaisa Kajala, Julian M Hibberd. Science 2011
85
36

Evolutionary convergence of cell-specific gene expression in independent lineages of C4 grasses.
Christopher R John, Richard D Smith-Unna, Helen Woodfield, Sarah Covshoff, Julian M Hibberd. Plant Physiol 2014
67
36

Anatomical enablers and the evolution of C4 photosynthesis in grasses.
Pascal-Antoine Christin, Colin P Osborne, David S Chatelet, J Travis Columbus, Guillaume Besnard, Trevor R Hodkinson, Laura M Garrison, Maria S Vorontsova, Erika J Edwards. Proc Natl Acad Sci U S A 2013
147
34

C4 Photosynthesis evolved in grasses via parallel adaptive genetic changes.
Pascal-Antoine Christin, Nicolas Salamin, Vincent Savolainen, Melvin R Duvall, Guillaume Besnard. Curr Biol 2007
135
31


Towards an integrative model of C4 photosynthetic subtypes: insights from comparative transcriptome analysis of NAD-ME, NADP-ME, and PEP-CK C4 species.
Andrea Bräutigam, Simon Schliesky, Canan Külahoglu, Colin P Osborne, Andreas P M Weber. J Exp Bot 2014
65
31

Three distinct biochemical subtypes of C4 photosynthesis? A modelling analysis.
Yu Wang, Andrea Bräutigam, Andreas P M Weber, Xin-Guang Zhu. J Exp Bot 2014
96
31

Comparative transcriptome atlases reveal altered gene expression modules between two Cleomaceae C3 and C4 plant species.
Canan Külahoglu, Alisandra K Denton, Manuel Sommer, Janina Maß, Simon Schliesky, Thomas J Wrobel, Barbara Berckmans, Elsa Gongora-Castillo, C Robin Buell, Rüdiger Simon,[...]. Plant Cell 2014
60
31

Evolution of C4 photosynthesis in the genus Flaveria: how many and which genes does it take to make C4?
Udo Gowik, Andrea Bräutigam, Katrin L Weber, Andreas P M Weber, Peter Westhoff. Plant Cell 2011
131
29


Deep evolutionary comparison of gene expression identifies parallel recruitment of trans-factors in two independent origins of C4 photosynthesis.
Sylvain Aubry, Steven Kelly, Britta M C Kümpers, Richard D Smith-Unna, Julian M Hibberd. PLoS Genet 2014
93
29

Genetic enablers underlying the clustered evolutionary origins of C4 photosynthesis in angiosperms.
Pascal-Antoine Christin, Mónica Arakaki, Colin P Osborne, Erika J Edwards. Mol Biol Evol 2015
40
35

Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Manfred G Grabherr, Brian J Haas, Moran Yassour, Joshua Z Levin, Dawn A Thompson, Ido Amit, Xian Adiconis, Lin Fan, Raktima Raychowdhury, Qiandong Zeng,[...]. Nat Biotechnol 2011
25

The evolution of C4 photosynthesis.
Rowan F Sage. New Phytol 2004
257
25

C(4) eudicots are not younger than C(4) monocots.
Pascal-Antoine Christin, Colin P Osborne, Rowan F Sage, Mónica Arakaki, Erika J Edwards. J Exp Bot 2011
80
25

Systems analysis of a maize leaf developmental gradient redefines the current C4 model and provides candidates for regulation.
Thea R Pick, Andrea Bräutigam, Urte Schlüter, Alisandra K Denton, Christian Colmsee, Uwe Scholz, Holger Fahnenstich, Roland Pieruschka, Uwe Rascher, Uwe Sonnewald,[...]. Plant Cell 2011
128
25

Characterizing regulatory and functional differentiation between maize mesophyll and bundle sheath cells by transcriptomic analysis.
Yao-Ming Chang, Wen-Yu Liu, Arthur Chun-Chieh Shih, Meng-Ni Shen, Chen-Hua Lu, Mei-Yeh Jade Lu, Hui-Wen Yang, Tzi-Yuan Wang, Sean C-C Chen, Stella Maris Chen,[...]. Plant Physiol 2012
103
23

The origins of C4 grasslands: integrating evolutionary and ecosystem science.
Erika J Edwards, Colin P Osborne, Caroline A E Strömberg, Stephen A Smith, William J Bond, Pascal-Antoine Christin, Asaph B Cousins, Melvin R Duvall, David L Fox, Robert P Freckleton,[...]. Science 2010
308
23

Comparative genomic analysis of C4 photosynthetic pathway evolution in grasses.
Xiyin Wang, Udo Gowik, Haibao Tang, John E Bowers, Peter Westhoff, Andrew H Paterson. Genome Biol 2009
89
23

Evolutionary insights on C4 photosynthetic subtypes in grasses from genomics and phylogenetics.
Pascal-Antoine Christin, Emanuela Samaritani, Blaise Petitpierre, Nicolas Salamin, Guillaume Besnard. Genome Biol Evol 2009
50
23

A plastidial sodium-dependent pyruvate transporter.
Tsuyoshi Furumoto, Teppei Yamaguchi, Yumiko Ohshima-Ichie, Masayoshi Nakamura, Yoshiko Tsuchida-Iwata, Masaki Shimamura, Junichi Ohnishi, Shingo Hata, Udo Gowik, Peter Westhoff,[...]. Nature 2011
155
23

Maize C4 and non-C4 NADP-dependent malic enzymes are encoded by distinct genes derived from a plastid-localized ancestor.
S Lorraine Tausta, Heather Miller Coyle, Beverly Rothermel, Virginia Stiefel, Timothy Nelson. Plant Mol Biol 2002
37
27

Phenotypic landscape inference reveals multiple evolutionary paths to C4 photosynthesis.
Ben P Williams, Iain G Johnston, Sarah Covshoff, Julian M Hibberd. Elife 2013
80
21

The developmental dynamics of the maize leaf transcriptome.
Pinghua Li, Lalit Ponnala, Neeru Gandotra, Lin Wang, Yaqing Si, S Lori Tausta, Tesfamichael H Kebrom, Nicholas Provart, Rohan Patel, Christopher R Myers,[...]. Nat Genet 2010
498
21

Evolution of C(4) phosphoenolpyruvate carboxykinase in grasses, from genotype to phenotype.
Pascal-Antoine Christin, Blaise Petitpierre, Nicolas Salamin, Lucie Büchi, Guillaume Besnard. Mol Biol Evol 2009
47
21

Comparative analyses of C₄ and C₃ photosynthesis in developing leaves of maize and rice.
Lin Wang, Angelika Czedik-Eysenberg, Rachel A Mertz, Yaqing Si, Takayuki Tohge, Adriano Nunes-Nesi, Stephanie Arrivault, Lauren K Dedow, Douglas W Bryant, Wen Zhou,[...]. Nat Biotechnol 2014
147
21

Cross species selection scans identify components of C4 photosynthesis in the grasses.
Pu Huang, Anthony J Studer, James C Schnable, Elizabeth A Kellogg, Thomas P Brutnell. J Exp Bot 2017
30
33

Highly Expressed Genes Are Preferentially Co-Opted for C4 Photosynthesis.
Jose J Moreno-Villena, Luke T Dunning, Colin P Osborne, Pascal-Antoine Christin. Mol Biol Evol 2018
31
32



Phylogenomics of C(4) photosynthesis in sedges (Cyperaceae): multiple appearances and genetic convergence.
Guillaume Besnard, A Muthama Muasya, Flavien Russier, Eric H Roalson, Nicolas Salamin, Pascal-Antoine Christin. Mol Biol Evol 2009
78
19

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
19

Oligocene CO2 decline promoted C4 photosynthesis in grasses.
Pascal-Antoine Christin, Guillaume Besnard, Emanuela Samaritani, Melvin R Duvall, Trevor R Hodkinson, Vincent Savolainen, Nicolas Salamin. Curr Biol 2008
181
19

Multiple Arabidopsis genes primed for recruitment into C₄ photosynthesis.
Kaisa Kajala, Naomi J Brown, Ben P Williams, Philippa Borrill, Lucy E Taylor, Julian M Hibberd. Plant J 2012
45
20

The evolutionary ecology of C4 plants.
Pascal-Antoine Christin, Colin P Osborne. New Phytol 2014
47
19

Photorespiration connects C3 and C4 photosynthesis.
Andrea Bräutigam, Udo Gowik. J Exp Bot 2016
55
19


Reference genome sequence of the model plant Setaria.
Jeffrey L Bennetzen, Jeremy Schmutz, Hao Wang, Ryan Percifield, Jennifer Hawkins, Ana C Pontaroli, Matt Estep, Liang Feng, Justin N Vaughn, Jane Grimwood,[...]. Nat Biotechnol 2012
442
17



Initial events during the evolution of C4 photosynthesis in C3 species of Flaveria.
Tammy L Sage, Florian A Busch, Daniel C Johnson, Patrick C Friesen, Corey R Stinson, Matt Stata, Stefanie Sultmanis, Beshar A Rahman, Stephen Rawsthorne, Rowan F Sage. Plant Physiol 2013
50
17

Molecular evolution of genes recruited into C₄ photosynthesis.
Ben P Williams, Sylvain Aubry, Julian M Hibberd. Trends Plant Sci 2012
53
17



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.