A citation-based method for searching scientific literature

Mayuko Yoda, Daniel Cifuentes, Natsuko Izumi, Yuriko Sakaguchi, Tsutomu Suzuki, Antonio J Giraldez, Yukihide Tomari. Cell Rep 2013
Times Cited: 100







List of co-cited articles
1134 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A dicer-independent miRNA biogenesis pathway that requires Ago catalysis.
Sihem Cheloufi, Camila O Dos Santos, Mark M W Chong, Gregory J Hannon. Nature 2010
671
50

A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity.
Daniel Cifuentes, Huiling Xue, David W Taylor, Heather Patnode, Yuichiro Mishima, Sihem Cheloufi, Enbo Ma, Shrikant Mane, Gregory J Hannon, Nathan D Lawson,[...]. Science 2010
545
49

Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis.
Jr-Shiuan Yang, Thomas Maurin, Nicolas Robine, Kasper D Rasmussen, Kate L Jeffrey, Rohit Chandwani, Eirini P Papapetrou, Michel Sadelain, Dónal O'Carroll, Eric C Lai. Proc Natl Acad Sci U S A 2010
267
39

Functional siRNAs and miRNAs exhibit strand bias.
Anastasia Khvorova, Angela Reynolds, Sumedha D Jayasena. Cell 2003
28

Maturation of mammalian H/ACA box snoRNAs: PAPD5-dependent adenylation and PARN-dependent trimming.
Heike Berndt, Christiane Harnisch, Christiane Rammelt, Nadine Stöhr, Anne Zirkel, Juliane C Dohm, Heinz Himmelbauer, Joao-Paulo Tavanez, Stefan Hüttelmaier, Elmar Wahle. RNA 2012
103
28

Asymmetry in the assembly of the RNAi enzyme complex.
Dianne S Schwarz, György Hutvágner, Tingting Du, Zuoshang Xu, Neil Aronin, Phillip D Zamore. Cell 2003
27

The nuclear RNase III Drosha initiates microRNA processing.
Yoontae Lee, Chiyoung Ahn, Jinju Han, Hyounjeong Choi, Jaekwang Kim, Jeongbin Yim, Junho Lee, Patrick Provost, Olof Rådmark, Sunyoung Kim,[...]. Nature 2003
26


Intronic microRNA precursors that bypass Drosha processing.
J Graham Ruby, Calvin H Jan, David P Bartel. Nature 2007
940
22

Regulation of microRNA biogenesis.
Minju Ha, V Narry Kim. Nat Rev Mol Cell Biol 2014
22

Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs.
Rui Yi, Yi Qin, Ian G Macara, Bryan R Cullen. Genes Dev 2003
21

The Microprocessor complex mediates the genesis of microRNAs.
Richard I Gregory, Kai-Ping Yan, Govindasamy Amuthan, Thimmaiah Chendrimada, Behzad Doratotaj, Neil Cooch, Ramin Shiekhattar. Nature 2004
20

Processing of primary microRNAs by the Microprocessor complex.
Ahmet M Denli, Bastiaan B J Tops, Ronald H A Plasterk, René F Ketting, Gregory J Hannon. Nature 2004
19

The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila.
Katsutomo Okamura, Joshua W Hagen, Hong Duan, David M Tyler, Eric C Lai. Cell 2007
635
18

Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs.
Gunter Meister, Markus Landthaler, Agnieszka Patkaniowska, Yair Dorsett, Grace Teng, Thomas Tuschl. Mol Cell 2004
18

Dicer-independent processing of short hairpin RNAs.
Ying Poi Liu, Nick C T Schopman, Ben Berkhout. Nucleic Acids Res 2013
53
33

Mammalian 5'-capped microRNA precursors that generate a single microRNA.
Mingyi Xie, Mingfeng Li, Anna Vilborg, Nara Lee, Mei-Di Shu, Valeria Yartseva, Nenad Šestan, Joan A Steitz. Cell 2013
115
17

A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA.
G Hutvágner, J McLachlan, A E Pasquinelli, E Bálint, T Tuschl, P D Zamore. Science 2001
17

MicroRNA genes are transcribed by RNA polymerase II.
Yoontae Lee, Minju Kim, Jinju Han, Kyu-Hyun Yeom, Sanghyuk Lee, Sung Hee Baek, V Narry Kim. EMBO J 2004
17

Argonaute2 is the catalytic engine of mammalian RNAi.
Jidong Liu, Michelle A Carmell, Fabiola V Rivas, Carolyn G Marsden, J Michael Thomson, Ji-Joon Song, Scott M Hammond, Leemor Joshua-Tor, Gregory J Hannon. Science 2004
17

Dicer recognizes the 5' end of RNA for efficient and accurate processing.
Jong-Eun Park, Inha Heo, Yuan Tian, Dhirendra K Simanshu, Hyeshik Chang, David Jee, Dinshaw J Patel, V Narry Kim. Nature 2011
287
16

Nuclear export of microRNA precursors.
Elsebet Lund, Stephan Güttinger, Angelo Calado, James E Dahlberg, Ulrike Kutay. Science 2004
16

The loop position of shRNAs and pre-miRNAs is critical for the accuracy of dicer processing in vivo.
Shuo Gu, Lan Jin, Yue Zhang, Yong Huang, Feijie Zhang, Paul N Valdmanis, Mark A Kay. Cell 2012
165
16

Poly(A)-specific ribonuclease (PARN): an allosterically regulated, processive and mRNA cap-interacting deadenylase.
Anders Virtanen, Niklas Henriksson, Per Nilsson, Mikael Nissbeck. Crit Rev Biochem Mol Biol 2013
44
36

microRNAs associated with the different human Argonaute proteins.
Anne Dueck, Christian Ziegler, Alexander Eichner, Eugene Berezikov, Gunter Meister. Nucleic Acids Res 2012
124
16


Beyond secondary structure: primary-sequence determinants license pri-miRNA hairpins for processing.
Vincent C Auyeung, Igor Ulitsky, Sean E McGeary, David P Bartel. Cell 2013
235
16

Poly(A)-specific ribonuclease deficiency impacts telomere biology and causes dyskeratosis congenita.
Hemanth Tummala, Amanda Walne, Laura Collopy, Shirleny Cardoso, Josu de la Fuente, Sarah Lawson, James Powell, Nicola Cooper, Alison Foster, Shehla Mohammed,[...]. J Clin Invest 2015
102
16

Most mammalian mRNAs are conserved targets of microRNAs.
Robin C Friedman, Kyle Kai-How Farh, Christopher B Burge, David P Bartel. Genome Res 2009
15

Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing.
A Grishok, A E Pasquinelli, D Conte, N Li, S Parrish, I Ha, D L Baillie, A Fire, G Ruvkun, C C Mello. Cell 2001
15

The Drosha-DGCR8 complex in primary microRNA processing.
Jinju Han, Yoontae Lee, Kyu-Hyun Yeom, Young-Kook Kim, Hua Jin, V Narry Kim. Genes Dev 2004
15

Functional parameters of Dicer-independent microRNA biogenesis.
Jr-Shiuan Yang, Thomas Maurin, Eric C Lai. RNA 2012
61
24



Exome sequencing links mutations in PARN and RTEL1 with familial pulmonary fibrosis and telomere shortening.
Bridget D Stuart, Jungmin Choi, Samir Zaidi, Chao Xing, Brody Holohan, Rui Chen, Mihwa Choi, Pooja Dharwadkar, Fernando Torres, Carlos E Girod,[...]. Nat Genet 2015
235
15

Poly(A)-specific ribonuclease (PARN) mediates 3'-end maturation of the telomerase RNA component.
Diane H Moon, Matthew Segal, Baris Boyraz, Eva Guinan, Inga Hofmann, Patrick Cahan, Albert K Tai, Suneet Agarwal. Nat Genet 2015
99
15

TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing.
Thimmaiah P Chendrimada, Richard I Gregory, Easwari Kumaraswamy, Jessica Norman, Neil Cooch, Kazuko Nishikura, Ramin Shiekhattar. Nature 2005
14

Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex.
Jinju Han, Yoontae Lee, Kyu-Hyeon Yeom, Jin-Wu Nam, Inha Heo, Je-Keun Rhee, Sun Young Sohn, Yunje Cho, Byoung-Tak Zhang, V Narry Kim. Cell 2006
14

A system for stable expression of short interfering RNAs in mammalian cells.
Thijn R Brummelkamp, René Bernards, Reuven Agami. Science 2002
14

The deadenylating nuclease (DAN) is involved in poly(A) tail removal during the meiotic maturation of Xenopus oocytes.
C G Körner, M Wormington, M Muckenthaler, S Schneider, E Dehlin, E Wahle. EMBO J 1998
194
14

A Polyadenylation-Dependent 3' End Maturation Pathway Is Required for the Synthesis of the Human Telomerase RNA.
Duy Nguyen, Valérie Grenier St-Sauveur, Danny Bergeron, Fabien Dupuis-Sandoval, Michelle S Scott, François Bachand. Cell Rep 2015
68
20

A human snoRNA with microRNA-like functions.
Christine Ender, Azra Krek, Marc R Friedländer, Michaela Beitzinger, Lasse Weinmann, Wei Chen, Sébastien Pfeffer, Nikolaus Rajewsky, Gunter Meister. Mol Cell 2008
540
13

Mammalian mirtron genes.
Eugene Berezikov, Wei-Jen Chung, Jason Willis, Edwin Cuppen, Eric C Lai. Mol Cell 2007
511
13


Right- and left-loop short shRNAs have distinct and unusual mechanisms of gene silencing.
Anne Dallas, Heini Ilves, Qing Ge, Pavan Kumar, Joshua Shorenstein, Sergei A Kazakov, Trinna L Cuellar, Michael T McManus, Mark A Behlke, Brian H Johnston. Nucleic Acids Res 2012
34
38

Minimal-length short hairpin RNAs: the relationship of structure and RNAi activity.
Qing Ge, Heini Ilves, Anne Dallas, Pavan Kumar, Joshua Shorenstein, Sergei A Kazakov, Brian H Johnston. RNA 2010
51
25


Destabilization of microRNAs in human cells by 3' deadenylation mediated by PARN and CUGBP1.
Takayuki Katoh, Hiroaki Hojo, Tsutomu Suzuki. Nucleic Acids Res 2015
46
28

Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans.
R F Ketting, S E Fischer, E Bernstein, T Sijen, G J Hannon, R H Plasterk. Genes Dev 2001
12

Single processing center models for human Dicer and bacterial RNase III.
Haidi Zhang, Fabrice A Kolb, Lukasz Jaskiewicz, Eric Westhof, Witold Filipowicz. Cell 2004
588
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.