A citation-based method for searching scientific literature

José M Santos-Pereira, Ana B Herrero, María L García-Rubio, Antonio Marín, Sergio Moreno, Andrés Aguilera. Genes Dev 2013
Times Cited: 56







List of co-cited articles
601 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Yeast Sen1 helicase protects the genome from transcription-associated instability.
Hannah E Mischo, Belén Gómez-González, Pawel Grzechnik, Ana G Rondón, Wu Wei, Lars Steinmetz, Andrés Aguilera, Nick J Proudfoot. Mol Cell 2011
253
51


R loops: from transcription byproducts to threats to genome stability.
Andrés Aguilera, Tatiana García-Muse. Mol Cell 2012
605
50


BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.
Vaibhav Bhatia, Sonia I Barroso, María L García-Rubio, Emanuela Tumini, Emilia Herrera-Moyano, Andrés Aguilera. Nature 2014
308
46

Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.
Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Natalia Gromak. Mol Cell 2011
470
42

Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription.
Sandie Tuduri, Laure Crabbé, Chiara Conti, Hélène Tourrière, Heidi Holtgreve-Grez, Anna Jauch, Véronique Pantesco, John De Vos, Aubin Thomas, Charles Theillet,[...]. Nat Cell Biol 2009
343
37

R-loop-mediated genome instability in mRNA cleavage and polyadenylation mutants.
Peter C Stirling, Yujia A Chan, Sean W Minaker, Maria J Aristizabal, Irene Barrett, Payal Sipahimalani, Michael S Kobor, Philip Hieter. Genes Dev 2012
160
37

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
476
35

Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles.
Belén Gómez-González, María García-Rubio, Rodrigo Bermejo, Hélène Gaillard, Katsuhiko Shirahige, Antonio Marín, Marco Foiani, Andrés Aguilera. EMBO J 2011
150
35

R loops: new modulators of genome dynamics and function.
José M Santos-Pereira, Andrés Aguilera. Nat Rev Genet 2015
416
35

Genome-wide profiling of yeast DNA:RNA hybrid prone sites with DRIP-chip.
Yujia A Chan, Maria J Aristizabal, Phoebe Y T Lu, Zongli Luo, Akil Hamza, Michael S Kobor, Peter C Stirling, Philip Hieter. PLoS Genet 2014
153
33

R-loop-mediated genomic instability is caused by impairment of replication fork progression.
Wenjian Gan, Zhishuang Guan, Jie Liu, Ting Gui, Keng Shen, James L Manley, Xialu Li. Genes Dev 2011
270
32

Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis.
Aziz El Hage, Sarah L French, Ann L Beyer, David Tollervey. Genes Dev 2010
293
32

A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability.
Renee D Paulsen, Deena V Soni, Roy Wollman, Angela T Hahn, Muh-Ching Yee, Anna Guan, Jayne A Hesley, Steven C Miller, Evan F Cromwell, David E Solow-Cordero,[...]. Mol Cell 2009
385
30

R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells.
Kefei Yu, Frederic Chedin, Chih-Lin Hsieh, Thomas E Wilson, Michael R Lieber. Nat Immunol 2003
525
30

GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination.
Paul A Ginno, Yoong Wearn Lim, Paul L Lott, Ian Korf, Frédéric Chédin. Genome Res 2013
216
28

Genome instability and transcription elongation impairment in human cells depleted of THO/TREX.
María S Domínguez-Sánchez, Sonia Barroso, Belén Gómez-González, Rosa Luna, Andrés Aguilera. PLoS Genet 2011
150
28


Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
317
28

R loops are linked to histone H3 S10 phosphorylation and chromatin condensation.
Maikel Castellano-Pozo, José M Santos-Pereira, Ana G Rondón, Sonia Barroso, Eloisa Andújar, Mónica Pérez-Alegre, Tatiana García-Muse, Andrés Aguilera. Mol Cell 2013
175
26


Senataxin associates with replication forks to protect fork integrity across RNA-polymerase-II-transcribed genes.
Amaya Alzu, Rodrigo Bermejo, Martina Begnis, Chiara Lucca, Daniele Piccini, Walter Carotenuto, Marco Saponaro, Alessandra Brambati, Andrea Cocito, Marco Foiani,[...]. Cell 2012
159
25


Ribonuclease H: the enzymes in eukaryotes.
Susana M Cerritelli, Robert J Crouch. FEBS J 2009
457
23

BRCA1 recruitment to transcriptional pause sites is required for R-loop-driven DNA damage repair.
Elodie Hatchi, Konstantina Skourti-Stathaki, Steffen Ventz, Luca Pinello, Angela Yen, Kinga Kamieniarz-Gdula, Stoil Dimitrov, Shailja Pathania, Kristine M McKinney, Matthew L Eaton,[...]. Mol Cell 2015
241
23

The THO complex component Thp2 counteracts telomeric R-loops and telomere shortening.
Verena Pfeiffer, Jérôme Crittin, Larissa Grolimund, Joachim Lingner. EMBO J 2013
90
21

Telomeric RNA-DNA hybrids affect telomere-length dynamics and senescence.
Bettina Balk, André Maicher, Martina Dees, Julia Klermund, Sarah Luke-Glaser, Katharina Bender, Brian Luke. Nat Struct Mol Biol 2013
188
21

Characterization of monoclonal antibody to DNA.RNA and its application to immunodetection of hybrids.
S J Boguslawski, D E Smith, M A Michalak, K E Mickelson, C O Yehle, W L Patterson, R J Carrico. J Immunol Methods 1986
263
21

R-loops induce repressive chromatin marks over mammalian gene terminators.
Konstantina Skourti-Stathaki, Kinga Kamieniarz-Gdula, Nicholas J Proudfoot. Nature 2014
229
21

R-loops cause replication impairment and genome instability during meiosis.
Maikel Castellano-Pozo, Tatiana García-Muse, Andrés Aguilera. EMBO Rep 2012
55
20

R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.
Qianwen Sun, Tibor Csorba, Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Caroline Dean. Science 2013
227
19

The yeast and human FACT chromatin-reorganizing complexes solve R-loop-mediated transcription-replication conflicts.
Emilia Herrera-Moyano, Xénia Mergui, María L García-Rubio, Sonia Barroso, Andrés Aguilera. Genes Dev 2014
113
19






R-loops associated with triplet repeat expansions promote gene silencing in Friedreich ataxia and fragile X syndrome.
Matthias Groh, Michele M P Lufino, Richard Wade-Martins, Natalia Gromak. PLoS Genet 2014
215
17

Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA.
Michelle L Duquette, Priya Handa, Jack A Vincent, Andrew F Taylor, Nancy Maizels. Genes Dev 2004
377
17

The core spliceosome as target and effector of non-canonical ATM signalling.
Maria Tresini, Daniël O Warmerdam, Petros Kolovos, Loes Snijder, Mischa G Vrouwe, Jeroen A A Demmers, Wilfred F J van IJcken, Frank G Grosveld, René H Medema, Jan H J Hoeijmakers,[...]. Nature 2015
155
17

Breaking bad: R-loops and genome integrity.
Julie Sollier, Karlene A Cimprich. Trends Cell Biol 2015
204
17

The Fanconi Anemia Pathway Maintains Genome Stability by Coordinating Replication and Transcription.
Rebekka A Schwab, Jadwiga Nieminuszczy, Fenil Shah, Jamie Langton, David Lopez Martinez, Chih-Chao Liang, Martin A Cohn, Richard J Gibbons, Andrew J Deans, Wojciech Niedzwiedz. Mol Cell 2015
209
17

The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes.
Andreas S Ivessa, Brian A Lenzmeier, Jessica B Bessler, Lara K Goudsouzian, Sandra L Schnakenberg, Virginia A Zakian. Mol Cell 2003
308
16

The THP1-SAC3-SUS1-CDC31 complex works in transcription elongation-mRNA export preventing RNA-mediated genome instability.
Cristina González-Aguilera, Cristina Tous, Belén Gómez-González, Pablo Huertas, Rosa Luna, Andrés Aguilera. Mol Biol Cell 2008
108
16



Causes of genome instability.
Andrés Aguilera, Tatiana García-Muse. Annu Rev Genet 2013
269
16



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.