A citation-based method for searching scientific literature

Orly L Wapinski, Thomas Vierbuchen, Kun Qu, Qian Yi Lee, Soham Chanda, Daniel R Fuentes, Paul G Giresi, Yi Han Ng, Samuele Marro, Norma F Neff, Daniela Drechsel, Ben Martynoga, Diogo S Castro, Ashley E Webb, Thomas C Südhof, Anne Brunet, Francois Guillemot, Howard Y Chang, Marius Wernig. Cell 2013
Times Cited: 362







List of co-cited articles
1129 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Direct conversion of fibroblasts to functional neurons by defined factors.
Thomas Vierbuchen, Austin Ostermeier, Zhiping P Pang, Yuko Kokubu, Thomas C Südhof, Marius Wernig. Nature 2010
48


Induction of human neuronal cells by defined transcription factors.
Zhiping P Pang, Nan Yang, Thomas Vierbuchen, Austin Ostermeier, Daniel R Fuentes, Troy Q Yang, Ami Citri, Vittorio Sebastiano, Samuele Marro, Thomas C Südhof,[...]. Nature 2011
839
27

Rapid Chromatin Switch in the Direct Reprogramming of Fibroblasts to Neurons.
Orly L Wapinski, Qian Yi Lee, Albert C Chen, Rui Li, M Ryan Corces, Cheen Euong Ang, Barbara Treutlein, Chaomei Xiang, Valérie Baubet, Fabian Patrik Suchy,[...]. Cell Rep 2017
69
36

Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq.
Barbara Treutlein, Qian Yi Lee, J Gray Camp, Moritz Mall, Winston Koh, Seyed Ali Mohammad Shariati, Sopheak Sim, Norma F Neff, Jan M Skotheim, Marius Wernig,[...]. Nature 2016
239
25

Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming.
Abdenour Soufi, Meilin Fernandez Garcia, Artur Jaroszewicz, Nebiyu Osman, Matteo Pellegrini, Kenneth S Zaret. Cell 2015
386
22

Generation of induced neuronal cells by the single reprogramming factor ASCL1.
Soham Chanda, Cheen Euong Ang, Jonathan Davila, ChangHui Pak, Moritz Mall, Qian Yi Lee, Henrik Ahlenius, Seung Woo Jung, Thomas C Südhof, Marius Wernig. Stem Cell Reports 2014
217
20

Conversion of mouse and human fibroblasts into functional spinal motor neurons.
Esther Y Son, Justin K Ichida, Brian J Wainger, Jeremy S Toma, Victor F Rafuse, Clifford J Woolf, Kevin Eggan. Cell Stem Cell 2011
464
18

Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons.
Chongyuan Luo, Qian Yi Lee, Orly Wapinski, Rosa Castanon, Joseph R Nery, Moritz Mall, Michael S Kareta, Sean M Cullen, Margaret A Goodell, Howard Y Chang,[...]. Elife 2019
40
45

Direct conversion of human fibroblasts to dopaminergic neurons.
Ulrich Pfisterer, Agnete Kirkeby, Olof Torper, James Wood, Jenny Nelander, Audrey Dufour, Anders Björklund, Olle Lindvall, Johan Jakobsson, Malin Parmar. Proc Natl Acad Sci U S A 2011
536
18


Induction of pluripotent stem cells from adult human fibroblasts by defined factors.
Kazutoshi Takahashi, Koji Tanabe, Mari Ohnuki, Megumi Narita, Tomoko Ichisaka, Kiichiro Tomoda, Shinya Yamanaka. Cell 2007
17

Myt1l safeguards neuronal identity by actively repressing many non-neuronal fates.
Moritz Mall, Michael S Kareta, Soham Chanda, Henrik Ahlenius, Nicholas Perotti, Bo Zhou, Sarah D Grieder, Xuecai Ge, Sienna Drake, Cheen Euong Ang,[...]. Nature 2017
110
17

Direct generation of functional dopaminergic neurons from mouse and human fibroblasts.
Massimiliano Caiazzo, Maria Teresa Dell'Anno, Elena Dvoretskova, Dejan Lazarevic, Stefano Taverna, Damiana Leo, Tatyana D Sotnikova, Andrea Menegon, Paola Roncaglia, Giorgia Colciago,[...]. Nature 2011
697
17

Ascl1 Coordinately Regulates Gene Expression and the Chromatin Landscape during Neurogenesis.
Alexandre A S F Raposo, Francisca F Vasconcelos, Daniela Drechsel, Corentine Marie, Caroline Johnston, Dirk Dolle, Angela Bithell, Sébastien Gillotin, Debbie L C van den Berg, Laurence Ettwiller,[...]. Cell Rep 2015
102
17

MicroRNA-mediated conversion of human fibroblasts to neurons.
Andrew S Yoo, Alfred X Sun, Li Li, Aleksandr Shcheglovitov, Thomas Portmann, Yulong Li, Chris Lee-Messer, Ricardo E Dolmetsch, Richard W Tsien, Gerald R Crabtree. Nature 2011
672
17

Transcriptional Mechanisms of Proneural Factors and REST in Regulating Neuronal Reprogramming of Astrocytes.
Giacomo Masserdotti, Sébastien Gillotin, Bernd Sutor, Daniela Drechsel, Martin Irmler, Helle F Jørgensen, Steffen Sass, Fabian J Theis, Johannes Beckers, Benedikt Berninger,[...]. Cell Stem Cell 2015
111
17

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
17


Pioneer Factor NeuroD1 Rearranges Transcriptional and Epigenetic Profiles to Execute Microglia-Neuron Conversion.
Taito Matsuda, Takashi Irie, Shutaro Katsurabayashi, Yoshinori Hayashi, Tatsuya Nagai, Nobuhiko Hamazaki, Aliya Mari D Adefuin, Fumihito Miura, Takashi Ito, Hiroshi Kimura,[...]. Neuron 2019
78
20

Identification and Successful Negotiation of a Metabolic Checkpoint in Direct Neuronal Reprogramming.
Sergio Gascón, Elisa Murenu, Giacomo Masserdotti, Felipe Ortega, Gianluca L Russo, David Petrik, Aditi Deshpande, Christophe Heinrich, Marisa Karow, Stephen P Robertson,[...]. Cell Stem Cell 2016
194
16


Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
15

Generation of human striatal neurons by microRNA-dependent direct conversion of fibroblasts.
Matheus B Victor, Michelle Richner, Tracey O Hermanstyne, Joseph L Ransdell, Courtney Sobieski, Pan-Yue Deng, Vitaly A Klyachko, Jeanne M Nerbonne, Andrew S Yoo. Neuron 2014
178
15

Small molecules enable neurogenin 2 to efficiently convert human fibroblasts into cholinergic neurons.
Meng-Lu Liu, Tong Zang, Yuhua Zou, Joshua C Chang, Jay R Gibson, Kimberly M Huber, Chun-Li Zhang. Nat Commun 2013
230
15

Direct reprogramming of fibroblasts into functional cardiomyocytes by defined factors.
Masaki Ieda, Ji-Dong Fu, Paul Delgado-Olguin, Vasanth Vedantham, Yohei Hayashi, Benoit G Bruneau, Deepak Srivastava. Cell 2010
14

Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes.
Begüm Aydin, Akshay Kakumanu, Mary Rossillo, Mireia Moreno-Estellés, Görkem Garipler, Niels Ringstad, Nuria Flames, Shaun Mahony, Esteban O Mazzoni. Nat Neurosci 2019
39
33

Induction of functional dopamine neurons from human astrocytes in vitro and mouse astrocytes in a Parkinson's disease model.
Pia Rivetti di Val Cervo, Roman A Romanov, Giada Spigolon, Débora Masini, Elisa Martín-Montañez, Enrique M Toledo, Gioele La Manno, Michael Feyder, Christian Pifl, Yi-Han Ng,[...]. Nat Biotechnol 2017
165
13

Direct Conversion of Normal and Alzheimer's Disease Human Fibroblasts into Neuronal Cells by Small Molecules.
Wenxiang Hu, Binlong Qiu, Wuqiang Guan, Qinying Wang, Min Wang, Wei Li, Longfei Gao, Lu Shen, Yin Huang, Gangcai Xie,[...]. Cell Stem Cell 2015
289
13

Directly Reprogrammed Human Neurons Retain Aging-Associated Transcriptomic Signatures and Reveal Age-Related Nucleocytoplasmic Defects.
Jerome Mertens, Apuã C M Paquola, Manching Ku, Emily Hatch, Lena Böhnke, Shauheen Ladjevardi, Sean McGrath, Benjamin Campbell, Hyungjun Lee, Joseph R Herdy,[...]. Cell Stem Cell 2015
366
13

Rapid Conversion of Fibroblasts into Functional Forebrain GABAergic Interneurons by Direct Genetic Reprogramming.
Gaia Colasante, Gabriele Lignani, Alicia Rubio, Lucian Medrihan, Latefa Yekhlef, Alessandro Sessa, Luca Massimino, Serena G Giannelli, Silvio Sacchetti, Massimiliano Caiazzo,[...]. Cell Stem Cell 2015
105
13

Proneural genes and the specification of neural cell types.
Nicolas Bertrand, Diogo S Castro, François Guillemot. Nat Rev Neurosci 2002
13

Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4.
Lisa Ann Cirillo, Frank Robert Lin, Isabel Cuesta, Dara Friedman, Michal Jarnik, Kenneth S Zaret. Mol Cell 2002
795
12

Pioneer transcription factors in cell reprogramming.
Makiko Iwafuchi-Doi, Kenneth S Zaret. Genes Dev 2014
334
12

Direct lineage conversion of terminally differentiated hepatocytes to functional neurons.
Samuele Marro, Zhiping P Pang, Nan Yang, Miao-Chih Tsai, Kun Qu, Howard Y Chang, Thomas C Südhof, Marius Wernig. Cell Stem Cell 2011
245
12

Small molecules enable highly efficient neuronal conversion of human fibroblasts.
Julia Ladewig, Jerome Mertens, Jaideep Kesavan, Jonas Doerr, Daniel Poppe, Finnja Glaue, Stefan Herms, Peter Wernet, Gesine Kögler, Franz-Josef Müller,[...]. Nat Methods 2012
225
12

Maintenance of age in human neurons generated by microRNA-based neuronal conversion of fibroblasts.
Christine J Huh, Bo Zhang, Matheus B Victor, Sonika Dahiya, Luis Fz Batista, Steve Horvath, Andrew S Yoo. Elife 2016
99
12

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
12

Small Molecules Modulate Chromatin Accessibility to Promote NEUROG2-Mediated Fibroblast-to-Neuron Reprogramming.
Derek K Smith, Jianjing Yang, Meng-Lu Liu, Chun-Li Zhang. Stem Cell Reports 2016
62
19

NeuroD1 reprograms chromatin and transcription factor landscapes to induce the neuronal program.
Abhijeet Pataskar, Johannes Jung, Pawel Smialowski, Florian Noack, Federico Calegari, Tobias Straub, Vijay K Tiwari. EMBO J 2016
122
11

Pioneer transcription factors, chromatin dynamics, and cell fate control.
Kenneth S Zaret, Susan E Mango. Curr Opin Genet Dev 2016
207
11

A novel function of the proneural factor Ascl1 in progenitor proliferation identified by genome-wide characterization of its targets.
Diogo S Castro, Ben Martynoga, Carlos Parras, Vidya Ramesh, Emilie Pacary, Caroline Johnston, Daniela Drechsel, Mélanie Lebel-Potter, Laura Galinanes Garcia, Charles Hunt,[...]. Genes Dev 2011
261
11

Functional properties of neurons derived from in vitro reprogrammed postnatal astroglia.
Benedikt Berninger, Marcos R Costa, Ursula Koch, Timm Schroeder, Bernd Sutor, Benedikt Grothe, Magdalena Götz. J Neurosci 2007
266
11

Generation of induced neurons via direct conversion in vivo.
Olof Torper, Ulrich Pfisterer, Daniel A Wolf, Maria Pereira, Shong Lau, Johan Jakobsson, Anders Björklund, Shane Grealish, Malin Parmar. Proc Natl Acad Sci U S A 2013
273
11

Reversing a model of Parkinson's disease with in situ converted nigral neurons.
Hao Qian, Xinjiang Kang, Jing Hu, Dongyang Zhang, Zhengyu Liang, Fan Meng, Xuan Zhang, Yuanchao Xue, Roy Maimon, Steven F Dowdy,[...]. Nature 2020
136
11

Cooperative Binding of Transcription Factors Orchestrates Reprogramming.
Constantinos Chronis, Petko Fiziev, Bernadett Papp, Stefan Butz, Giancarlo Bonora, Shan Sabri, Jason Ernst, Kathrin Plath. Cell 2017
250
10

Ascl1 Converts Dorsal Midbrain Astrocytes into Functional Neurons In Vivo.
Yueguang Liu, Qinglong Miao, Jiacheng Yuan, Su'e Han, Panpan Zhang, Sanlan Li, Zhiping Rao, Wenlong Zhao, Qian Ye, Junlan Geng,[...]. J Neurosci 2015
136
10

Rapid single-step induction of functional neurons from human pluripotent stem cells.
Yingsha Zhang, Changhui Pak, Yan Han, Henrik Ahlenius, Zhenjie Zhang, Soham Chanda, Samuele Marro, Christopher Patzke, Claudio Acuna, Jason Covy,[...]. Neuron 2013
665
10

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
10

Glial cells generate neurons: the role of the transcription factor Pax6.
Nico Heins, Paolo Malatesta, Francesco Cecconi, Masato Nakafuku, Kerry Lee Tucker, Michael A Hack, Prisca Chapouton, Yves-Alain Barde, Magdalena Götz. Nat Neurosci 2002
556
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.