A citation-based method for searching scientific literature

Amber L Couzens, James D R Knight, Michelle J Kean, Guoci Teo, Alexander Weiss, Wade H Dunham, Zhen-Yuan Lin, Richard D Bagshaw, Frank Sicheri, Tony Pawson, Jeffrey L Wrana, Hyungwon Choi, Anne-Claude Gingras. Sci Signal 2013
Times Cited: 281







List of co-cited articles
1033 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface.
Gagan D Gupta, Étienne Coyaud, João Gonçalves, Bahareh A Mojarad, Yi Liu, Qianzhu Wu, Ladan Gheiratmand, David Comartin, Johnny M Tkach, Sally W T Cheung,[...]. Cell 2015
260
18

Probing nuclear pore complex architecture with proximity-dependent biotinylation.
Dae In Kim, K C Birendra, Wenhong Zhu, Khatereh Motamedchaboki, Valérie Doye, Kyle J Roux. Proc Natl Acad Sci U S A 2014
244
17

Inactivation of YAP oncoprotein by the Hippo pathway is involved in cell contact inhibition and tissue growth control.
Bin Zhao, Xiaomu Wei, Weiquan Li, Ryan S Udan, Qian Yang, Joungmok Kim, Joe Xie, Tsuneo Ikenoue, Jindan Yu, Li Li,[...]. Genes Dev 2007
17

Role of YAP/TAZ in mechanotransduction.
Sirio Dupont, Leonardo Morsut, Mariaceleste Aragona, Elena Enzo, Stefano Giulitti, Michelangelo Cordenonsi, Francesca Zanconato, Jimmy Le Digabel, Mattia Forcato, Silvio Bicciato,[...]. Nature 2011
15

High-Density Proximity Mapping Reveals the Subcellular Organization of mRNA-Associated Granules and Bodies.
Ji-Young Youn, Wade H Dunham, Seo Jung Hong, James D R Knight, Mikhail Bashkurov, Ginny I Chen, Halil Bagci, Bhavisha Rathod, Graham MacLeod, Simon W M Eng,[...]. Mol Cell 2018
228
15

Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.
Hyun-Woo Rhee, Peng Zou, Namrata D Udeshi, Jeffrey D Martell, Vamsi K Mootha, Steven A Carr, Alice Y Ting. Science 2013
585
14

Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes.
Jean-Philippe Lambert, Monika Tucholska, Christopher Go, James D R Knight, Anne-Claude Gingras. J Proteomics 2015
144
14

MAP4K family kinases act in parallel to MST1/2 to activate LATS1/2 in the Hippo pathway.
Zhipeng Meng, Toshiro Moroishi, Violaine Mottier-Pavie, Steven W Plouffe, Carsten G Hansen, Audrey W Hong, Hyun Woo Park, Jung-Soon Mo, Wenqi Lu, Shicong Lu,[...]. Nat Commun 2015
242
14

Efficient proximity labeling in living cells and organisms with TurboID.
Tess C Branon, Justin A Bosch, Ariana D Sanchez, Namrata D Udeshi, Tanya Svinkina, Steven A Carr, Jessica L Feldman, Norbert Perrimon, Alice Y Ting. Nat Biotechnol 2018
296
13

Angiomotin is a novel Hippo pathway component that inhibits YAP oncoprotein.
Bin Zhao, Li Li, Qing Lu, Lloyd H Wang, Chen-Ying Liu, Qunying Lei, Kun-Liang Guan. Genes Dev 2011
430
13

Combined functional genomic and proteomic approaches identify a PP2A complex as a negative regulator of Hippo signaling.
Paulo S Ribeiro, Filipe Josué, Alexander Wepf, Michael C Wehr, Oliver Rinner, Gavin Kelly, Nicolas Tapon, Matthias Gstaiger. Mol Cell 2010
158
13

Homeostatic Control of Hpo/MST Kinase Activity through Autophosphorylation-Dependent Recruitment of the STRIPAK PP2A Phosphatase Complex.
Yonggang Zheng, Bo Liu, Li Wang, Huiyan Lei, Katiuska Daniela Pulgar Prieto, Duojia Pan. Cell Rep 2017
49
26

Defining the protein-protein interaction network of the human hippo pathway.
Wenqi Wang, Xu Li, Jun Huang, Lin Feng, Keithlee G Dolinta, Junjie Chen. Mol Cell Proteomics 2014
91
14

The CRAPome: a contaminant repository for affinity purification-mass spectrometry data.
Dattatreya Mellacheruvu, Zachary Wright, Amber L Couzens, Jean-Philippe Lambert, Nicole A St-Denis, Tuo Li, Yana V Miteva, Simon Hauri, Mihaela E Sardiu, Teck Yew Low,[...]. Nat Methods 2013
743
12

SAINT: probabilistic scoring of affinity purification-mass spectrometry data.
Hyungwon Choi, Brett Larsen, Zhen-Yuan Lin, Ashton Breitkreutz, Dattatreya Mellacheruvu, Damian Fermin, Zhaohui S Qin, Mike Tyers, Anne-Claude Gingras, Alexey I Nesvizhskii. Nat Methods 2011
411
11

SAV1 promotes Hippo kinase activation through antagonizing the PP2A phosphatase STRIPAK.
Sung Jun Bae, Lisheng Ni, Adam Osinski, Diana R Tomchick, Chad A Brautigam, Xuelian Luo. Elife 2017
57
19

The Ste20-like kinase Mst2 activates the human large tumor suppressor kinase Lats1.
Eunice H Y Chan, Marjaana Nousiainen, Ravindra B Chalamalasetty, Anja Schäfer, Erich A Nigg, Herman H W Silljé. Oncogene 2005
383
11

A coordinated phosphorylation by Lats and CK1 regulates YAP stability through SCF(beta-TRCP).
Bin Zhao, Li Li, Karen Tumaneng, Cun-Yu Wang, Kun-Liang Guan. Genes Dev 2010
763
11


Architecture of the human interactome defines protein communities and disease networks.
Edward L Huttlin, Raphael J Bruckner, Joao A Paulo, Joe R Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P Gygi, Hannah Parzen,[...]. Nature 2017
572
10

An improved smaller biotin ligase for BioID proximity labeling.
Dae In Kim, Samuel C Jensen, Kyle A Noble, Birendra Kc, Kenneth H Roux, Khatereh Motamedchaboki, Kyle J Roux. Mol Biol Cell 2016
245
10

Elucidation of a universal size-control mechanism in Drosophila and mammals.
Jixin Dong, Georg Feldmann, Jianbin Huang, Shian Wu, Nailing Zhang, Sarah A Comerford, Mariana F Gayyed, Robert A Anders, Anirban Maitra, Duojia Pan. Cell 2007
10

TEAD mediates YAP-dependent gene induction and growth control.
Bin Zhao, Xin Ye, Jindan Yu, Li Li, Weiquan Li, Siming Li, Jianjun Yu, Jiandie D Lin, Cun-Yu Wang, Arul M Chinnaiyan,[...]. Genes Dev 2008
10

Mechanisms of Hippo pathway regulation.
Zhipeng Meng, Toshiro Moroishi, Kun-Liang Guan. Genes Dev 2016
685
10

STRIPAK complexes: structure, biological function, and involvement in human diseases.
Juyeon Hwang, David C Pallas. Int J Biochem Cell Biol 2014
128
10

SAINTexpress: improvements and additional features in Significance Analysis of INTeractome software.
Guoci Teo, Guomin Liu, Jianping Zhang, Alexey I Nesvizhskii, Anne-Claude Gingras, Hyungwon Choi. J Proteomics 2014
231
10

STRIPAK integrates upstream signals to initiate the Hippo kinase cascade.
Rui Chen, Ruiling Xie, Zhipeng Meng, Shenghong Ma, Kun-Liang Guan. Nat Cell Biol 2019
29
34

Directed evolution of APEX2 for electron microscopy and proximity labeling.
Stephanie S Lam, Jeffrey D Martell, Kimberli J Kamer, Thomas J Deerinck, Mark H Ellisman, Vamsi K Mootha, Alice Y Ting. Nat Methods 2015
465
9

YAP/TAZ at the Roots of Cancer.
Francesca Zanconato, Michelangelo Cordenonsi, Stefano Piccolo. Cancer Cell 2016
745
9

Phenotypic and Interaction Profiling of the Human Phosphatases Identifies Diverse Mitotic Regulators.
Nicole St-Denis, Gagan D Gupta, Zhen Yuan Lin, Beatriz Gonzalez-Badillo, Amanda O Veri, James D R Knight, Dushyandi Rajendran, Amber L Couzens, Ko W Currie, Johnny M Tkach,[...]. Cell Rep 2016
51
17

Yap1 acts downstream of α-catenin to control epidermal proliferation.
Karin Schlegelmilch, Morvarid Mohseni, Oktay Kirak, Jan Pruszak, J Renato Rodriguez, Dawang Zhou, Bridget T Kreger, Valera Vasioukhin, Joseph Avruch, Thijn R Brummelkamp,[...]. Cell 2011
670
9

Identification of Happyhour/MAP4K as Alternative Hpo/Mst-like Kinases in the Hippo Kinase Cascade.
Yonggang Zheng, Wei Wang, Bo Liu, Hua Deng, Eliza Uster, Duojia Pan. Dev Cell 2015
114
9


Regulation of the Hippo-YAP pathway by G-protein-coupled receptor signaling.
Fa-Xing Yu, Bin Zhao, Nattapon Panupinthu, Jenna L Jewell, Ian Lian, Lloyd H Wang, Jiagang Zhao, Haixin Yuan, Karen Tumaneng, Hairi Li,[...]. Cell 2012
917
9

A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein.
Marilyn Goudreault, Lisa M D'Ambrosio, Michelle J Kean, Michael J Mullin, Brett G Larsen, Amy Sanchez, Sidharth Chaudhry, Ginny I Chen, Frank Sicheri, Alexey I Nesvizhskii,[...]. Mol Cell Proteomics 2009
243
9

The Hippo pathway: regulators and regulations.
Fa-Xing Yu, Kun-Liang Guan. Genes Dev 2013
764
9

Architecture, substructures, and dynamic assembly of STRIPAK complexes in Hippo signaling.
Yang Tang, Min Chen, Li Zhou, Jian Ma, Yehua Li, Hui Zhang, Zhubing Shi, Qi Xu, Xiaoman Zhang, Ziyang Gao,[...]. Cell Discov 2019
25
36

Proteomic mapping of the human mitochondrial intermembrane space in live cells via ratiometric APEX tagging.
Victoria Hung, Peng Zou, Hyun-Woo Rhee, Namrata D Udeshi, Valentin Cracan, Tanya Svinkina, Steven A Carr, Vamsi K Mootha, Alice Y Ting. Mol Cell 2014
247
8

A mechanical checkpoint controls multicellular growth through YAP/TAZ regulation by actin-processing factors.
Mariaceleste Aragona, Tito Panciera, Andrea Manfrin, Stefano Giulitti, Federica Michielin, Nicola Elvassore, Sirio Dupont, Stefano Piccolo. Cell 2013
818
8

Genome-wide association between YAP/TAZ/TEAD and AP-1 at enhancers drives oncogenic growth.
Francesca Zanconato, Mattia Forcato, Giusy Battilana, Luca Azzolin, Erika Quaranta, Beatrice Bodega, Antonio Rosato, Silvio Bicciato, Michelangelo Cordenonsi, Stefano Piccolo. Nat Cell Biol 2015
477
8

Spatial organization of Hippo signaling at the plasma membrane mediated by the tumor suppressor Merlin/NF2.
Feng Yin, Jianzhong Yu, Yonggang Zheng, Qian Chen, Nailing Zhang, Duojia Pan. Cell 2013
299
8

STRIPAK components determine mode of cancer cell migration and metastasis.
Chris D Madsen, Steven Hooper, Melda Tozluoglu, Andreas Bruckbauer, Georgina Fletcher, Janine T Erler, Paul A Bates, Barry Thompson, Erik Sahai. Nat Cell Biol 2015
94
8

The Crumbs complex couples cell density sensing to Hippo-dependent control of the TGF-β-SMAD pathway.
Xaralabos Varelas, Payman Samavarchi-Tehrani, Masahiro Narimatsu, Alexander Weiss, Katie Cockburn, Brett G Larsen, Janet Rossant, Jeffrey L Wrana. Dev Cell 2010
451
8

The Hippo Signaling Network and Its Biological Functions.
Jyoti R Misra, Kenneth D Irvine. Annu Rev Genet 2018
119
8

Proteomic Analysis of Unbounded Cellular Compartments: Synaptic Clefts.
Ken H Loh, Philipp S Stawski, Austin S Draycott, Namrata D Udeshi, Emily K Lehrman, Daniel K Wilton, Tanya Svinkina, Thomas J Deerinck, Mark H Ellisman, Beth Stevens,[...]. Cell 2016
156
7

New insights into the DT40 B cell receptor cluster using a proteomic proximity labeling assay.
Xue-Wen Li, Johanna S Rees, Peng Xue, Hong Zhang, Samir W Hamaia, Bailey Sanderson, Phillip E Funk, Richard W Farndale, Kathryn S Lilley, Sarah Perrett,[...]. J Biol Chem 2014
63
11

Global, quantitative and dynamic mapping of protein subcellular localization.
Daniel N Itzhak, Stefka Tyanova, Jürgen Cox, Georg Hh Borner. Elife 2016
211
7

Promiscuous protein biotinylation by Escherichia coli biotin protein ligase.
Eunjoo Choi-Rhee, Howard Schulman, John E Cronan. Protein Sci 2004
115
7

The BioPlex Network: A Systematic Exploration of the Human Interactome.
Edward L Huttlin, Lily Ting, Raphael J Bruckner, Fana Gebreab, Melanie P Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier,[...]. Cell 2015
734
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.