A citation-based method for searching scientific literature

Alessandro Fatica, Irene Bozzoni. Nat Rev Genet 2014
Times Cited: 2029







List of co-cited articles
386 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Evolution and functions of long noncoding RNAs.
Chris P Ponting, Peter L Oliver, Wolf Reik. Cell 2009
16

Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, Ahmedin Jemal. CA Cancer J Clin 2018
14

Gene regulation by long non-coding RNAs and its biological functions.
Luisa Statello, Chun-Jie Guo, Ling-Ling Chen, Maite Huarte. Nat Rev Mol Cell Biol 2021
752
14

Long non-coding RNAs: insights into functions.
Tim R Mercer, Marcel E Dinger, John S Mattick. Nat Rev Genet 2009
13

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
12


Long Noncoding RNAs in Cancer Pathways.
Adam M Schmitt, Howard Y Chang. Cancer Cell 2016
10

lincRNAs: genomics, evolution, and mechanisms.
Igor Ulitsky, David P Bartel. Cell 2013
9


Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
8

The multilayered complexity of ceRNA crosstalk and competition.
Yvonne Tay, John Rinn, Pier Paolo Pandolfi. Nature 2014
8



The landscape of long noncoding RNAs in the human transcriptome.
Matthew K Iyer, Yashar S Niknafs, Rohit Malik, Udit Singhal, Anirban Sahu, Yasuyuki Hosono, Terrence R Barrette, John R Prensner, Joseph R Evans, Shuang Zhao,[...]. Nat Genet 2015
7

RNA maps reveal new RNA classes and a possible function for pervasive transcription.
Philipp Kapranov, Jill Cheng, Sujit Dike, David A Nix, Radharani Duttagupta, Aarron T Willingham, Peter F Stadler, Jana Hertel, Jörg Hackermüller, Ivo L Hofacker,[...]. Science 2007
7

Unique features of long non-coding RNA biogenesis and function.
Jeffrey J Quinn, Howard Y Chang. Nat Rev Genet 2016
7

Genome regulation by long noncoding RNAs.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2012
7

Long noncoding RNAs: functional surprises from the RNA world.
Jeremy E Wilusz, Hongjae Sunwoo, David L Spector. Genes Dev 2009
7

Molecular mechanisms of long noncoding RNAs.
Kevin C Wang, Howard Y Chang. Mol Cell 2011
6

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.
Moran N Cabili, Cole Trapnell, Loyal Goff, Magdalena Koziol, Barbara Tazon-Vega, Aviv Regev, John L Rinn. Genes Dev 2011
6

Global cancer statistics, 2012.
Lindsey A Torre, Freddie Bray, Rebecca L Siegel, Jacques Ferlay, Joannie Lortet-Tieulent, Ahmedin Jemal. CA Cancer J Clin 2015
5

Cancer statistics, 2019.
Rebecca L Siegel, Kimberly D Miller, Ahmedin Jemal. CA Cancer J Clin 2019
5

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
5

Gene regulation in the immune system by long noncoding RNAs.
Y Grace Chen, Ansuman T Satpathy, Howard Y Chang. Nat Immunol 2017
391
5

Analyzing real-time PCR data by the comparative C(T) method.
Thomas D Schmittgen, Kenneth J Livak. Nat Protoc 2008
5

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
5

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
5

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts.
Liang Sun, Haitao Luo, Dechao Bu, Guoguang Zhao, Kuntao Yu, Changhai Zhang, Yuanning Liu, Runsheng Chen, Yi Zhao. Nucleic Acids Res 2013
867
5

A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA.
Marcella Cesana, Davide Cacchiarelli, Ivano Legnini, Tiziana Santini, Olga Sthandier, Mauro Chinappi, Anna Tramontano, Irene Bozzoni. Cell 2011
5

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
Cole Trapnell, Brian A Williams, Geo Pertea, Ali Mortazavi, Gordon Kwan, Marijke J van Baren, Steven L Salzberg, Barbara J Wold, Lior Pachter. Nat Biotechnol 2010
5

HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
5

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis.
Rajnish A Gupta, Nilay Shah, Kevin C Wang, Jeewon Kim, Hugo M Horlings, David J Wong, Miao-Chih Tsai, Tiffany Hung, Pedram Argani, John L Rinn,[...]. Nature 2010
5

Towards a complete map of the human long non-coding RNA transcriptome.
Barbara Uszczynska-Ratajczak, Julien Lagarde, Adam Frankish, Roderic Guigó, Rory Johnson. Nat Rev Genet 2018
252
4

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.
Jun-Hao Li, Shun Liu, Hui Zhou, Liang-Hu Qu, Jian-Hua Yang. Nucleic Acids Res 2014
4

Circular RNAs are abundant, conserved, and associated with ALU repeats.
William R Jeck, Jessica A Sorrentino, Kai Wang, Michael K Slevin, Christin E Burd, Jinze Liu, William F Marzluff, Norman E Sharpless. RNA 2013
4

An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.
Christine M Clemson, John N Hutchinson, Sergio A Sara, Alexander W Ensminger, Archa H Fox, Andrew Chess, Jeanne B Lawrence. Mol Cell 2009
955
4

The functions and unique features of long intergenic non-coding RNA.
Julia D Ransohoff, Yuning Wei, Paul A Khavari. Nat Rev Mol Cell Biol 2018
540
4

LncRNA-Encoded Peptide: Functions and Predicting Methods.
Jiani Xing, Haizhou Liu, Wei Jiang, Lihong Wang. Front Oncol 2021
21
19

A micropeptide encoded by a putative long noncoding RNA regulates muscle performance.
Douglas M Anderson, Kelly M Anderson, Chi-Lun Chang, Catherine A Makarewich, Benjamin R Nelson, John R McAnally, Prasad Kasaragod, John M Shelton, Jen Liou, Rhonda Bassel-Duby,[...]. Cell 2015
669
4

Cellular functions of long noncoding RNAs.
Run-Wen Yao, Yang Wang, Ling-Ling Chen. Nat Cell Biol 2019
643
4

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
4

The rise of regulatory RNA.
Kevin V Morris, John S Mattick. Nat Rev Genet 2014
802
4

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.
Mitchell Guttman, Ido Amit, Manuel Garber, Courtney French, Michael F Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W Carey, John P Cassady,[...]. Nature 2009
4

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
4

Cytoplasmic functions of long noncoding RNAs.
Ji Heon Noh, Kyoung Mi Kim, Waverly G McClusky, Kotb Abdelmohsen, Myriam Gorospe. Wiley Interdiscip Rev RNA 2018
206
4

Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice.
Yu-Chan Zhang, Jian-You Liao, Ze-Yuan Li, Yang Yu, Jin-Ping Zhang, Quan-Feng Li, Liang-Hu Qu, Wen-Sheng Shu, Yue-Qin Chen. Genome Biol 2014
285
4

Modular regulatory principles of large non-coding RNAs.
Mitchell Guttman, John L Rinn. Nature 2012
4

Long noncoding RNAs: past, present, and future.
Johnny T Y Kung, David Colognori, Jeannie T Lee. Genetics 2013
4

Mechanisms and Functions of Long Non-Coding RNAs at Multiple Regulatory Levels.
Xiaopei Zhang, Wei Wang, Weidong Zhu, Jie Dong, Yingying Cheng, Zujun Yin, Fafu Shen. Int J Mol Sci 2019
231
4

Noncoding RNA NORAD Regulates Genomic Stability by Sequestering PUMILIO Proteins.
Sungyul Lee, Florian Kopp, Tsung-Cheng Chang, Anupama Sataluri, Beibei Chen, Sushama Sivakumar, Hongtao Yu, Yang Xie, Joshua T Mendell. Cell 2016
482
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.