A citation-based method for searching scientific literature

Mingyi Xie, Mingfeng Li, Anna Vilborg, Nara Lee, Mei-Di Shu, Valeria Yartseva, Nenad Šestan, Joan A Steitz. Cell 2013
Times Cited: 129







List of co-cited articles
1126 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Regulation of microRNA biogenesis.
Minju Ha, V Narry Kim. Nat Rev Mol Cell Biol 2014
46

Intronic microRNA precursors that bypass Drosha processing.
J Graham Ruby, Calvin H Jan, David P Bartel. Nature 2007
982
45

A dicer-independent miRNA biogenesis pathway that requires Ago catalysis.
Sihem Cheloufi, Camila O Dos Santos, Mark M W Chong, Gregory J Hannon. Nature 2010
716
35

Processing of primary microRNAs by the Microprocessor complex.
Ahmet M Denli, Bastiaan B J Tops, Ronald H A Plasterk, René F Ketting, Gregory J Hannon. Nature 2004
34

Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis.
Jr-Shiuan Yang, Thomas Maurin, Nicolas Robine, Kasper D Rasmussen, Kate L Jeffrey, Rohit Chandwani, Eirini P Papapetrou, Michel Sadelain, Dónal O'Carroll, Eric C Lai. Proc Natl Acad Sci U S A 2010
292
28


The nuclear RNase III Drosha initiates microRNA processing.
Yoontae Lee, Chiyoung Ahn, Jinju Han, Hyounjeong Choi, Jaekwang Kim, Jeongbin Yim, Junho Lee, Patrick Provost, Olof Rådmark, Sunyoung Kim,[...]. Nature 2003
27

The Drosha-DGCR8 complex in primary microRNA processing.
Jinju Han, Yoontae Lee, Kyu-Hyun Yeom, Young-Kook Kim, Hua Jin, V Narry Kim. Genes Dev 2004
27

A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity.
Daniel Cifuentes, Huiling Xue, David W Taylor, Heather Patnode, Yuichiro Mishima, Sihem Cheloufi, Enbo Ma, Shrikant Mane, Gregory J Hannon, Nathan D Lawson,[...]. Science 2010
576
25

Most mammalian mRNAs are conserved targets of microRNAs.
Robin C Friedman, Kyle Kai-How Farh, Christopher B Burge, David P Bartel. Genome Res 2009
22

Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs.
Rui Yi, Yi Qin, Ian G Macara, Bryan R Cullen. Genes Dev 2003
22

The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila.
Katsutomo Okamura, Joshua W Hagen, Hong Duan, David M Tyler, Eric C Lai. Cell 2007
663
22

Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs.
Joshua E Babiarz, J Graham Ruby, Yangming Wang, David P Bartel, Robert Blelloch. Genes Dev 2008
577
21

Functional Anatomy of the Human Microprocessor.
Tuan Anh Nguyen, Myung Hyun Jo, Yeon-Gil Choi, Joha Park, S Chul Kwon, Sungchul Hohng, V Narry Kim, Jae-Sung Woo. Cell 2015
206
21

Re-evaluation of the roles of DROSHA, Export in 5, and DICER in microRNA biogenesis.
Young-Kook Kim, Boseon Kim, V Narry Kim. Proc Natl Acad Sci U S A 2016
245
21

Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation.
Jacob O'Brien, Heyam Hayder, Yara Zayed, Chun Peng. Front Endocrinol (Lausanne) 2018
21

MicroRNA genes are transcribed by RNA polymerase II.
Yoontae Lee, Minju Kim, Jinju Han, Kyu-Hyun Yeom, Sanghyuk Lee, Sung Hee Baek, V Narry Kim. EMBO J 2004
20

Mammalian mirtron genes.
Eugene Berezikov, Wei-Jen Chung, Jason Willis, Edwin Cuppen, Eric C Lai. Mol Cell 2007
525
20

Towards a molecular understanding of microRNA-mediated gene silencing.
Stefanie Jonas, Elisa Izaurralde. Nat Rev Genet 2015
19

Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex.
Jinju Han, Yoontae Lee, Kyu-Hyeon Yeom, Jin-Wu Nam, Inha Heo, Je-Keun Rhee, Sun Young Sohn, Yunje Cho, Byoung-Tak Zhang, V Narry Kim. Cell 2006
18



Functional siRNAs and miRNAs exhibit strand bias.
Anastasia Khvorova, Angela Reynolds, Sumedha D Jayasena. Cell 2003
17

A high-resolution structure of the pre-microRNA nuclear export machinery.
Chimari Okada, Eiki Yamashita, Soo Jae Lee, Satoshi Shibata, Jun Katahira, Atsushi Nakagawa, Yoshihiro Yoneda, Tomitake Tsukihara. Science 2009
234
17

The Microprocessor complex mediates the genesis of microRNAs.
Richard I Gregory, Kai-Ping Yan, Govindasamy Amuthan, Thimmaiah Chendrimada, Behzad Doratotaj, Neil Cooch, Ramin Shiekhattar. Nature 2004
16

Poly(A)-specific ribonuclease mediates 3'-end trimming of Argonaute2-cleaved precursor microRNAs.
Mayuko Yoda, Daniel Cifuentes, Natsuko Izumi, Yuriko Sakaguchi, Tsutomu Suzuki, Antonio J Giraldez, Yukihide Tomari. Cell Rep 2013
109
16

MicroRNA maturation: stepwise processing and subcellular localization.
Yoontae Lee, Kipyoung Jeon, Jun-Tae Lee, Sunyoung Kim, V Narry Kim. EMBO J 2002
16

Single processing center models for human Dicer and bacterial RNase III.
Haidi Zhang, Fabrice A Kolb, Lukasz Jaskiewicz, Eric Westhof, Witold Filipowicz. Cell 2004
630
16

The widespread regulation of microRNA biogenesis, function and decay.
Jacek Krol, Inga Loedige, Witold Filipowicz. Nat Rev Genet 2010
15

A human snoRNA with microRNA-like functions.
Christine Ender, Azra Krek, Marc R Friedländer, Michaela Beitzinger, Lasse Weinmann, Wei Chen, Sébastien Pfeffer, Nikolaus Rajewsky, Gunter Meister. Mol Cell 2008
573
15

miRBase: from microRNA sequences to function.
Ana Kozomara, Maria Birgaoanu, Sam Griffiths-Jones. Nucleic Acids Res 2019
15

miRBase: annotating high confidence microRNAs using deep sequencing data.
Ana Kozomara, Sam Griffiths-Jones. Nucleic Acids Res 2014
14

Dicer recognizes the 5' end of RNA for efficient and accurate processing.
Jong-Eun Park, Inha Heo, Yuan Tian, Dhirendra K Simanshu, Hyeshik Chang, David Jee, Dinshaw J Patel, V Narry Kim. Nature 2011
315
14

Beyond secondary structure: primary-sequence determinants license pri-miRNA hairpins for processing.
Vincent C Auyeung, Igor Ulitsky, Sean E McGeary, David P Bartel. Cell 2013
268
14


Metazoan MicroRNAs.
David P Bartel. Cell 2018
14

ATP-dependent human RISC assembly pathways.
Mayuko Yoda, Tomoko Kawamata, Zain Paroo, Xuecheng Ye, Shintaro Iwasaki, Qinghua Liu, Yukihide Tomari. Nat Struct Mol Biol 2010
212
13

N6-methyladenosine marks primary microRNAs for processing.
Claudio R Alarcón, Hyeseung Lee, Hani Goodarzi, Nils Halberg, Sohail F Tavazoie. Nature 2015
663
13

Processing of intronic microRNAs.
Young-Kook Kim, V Narry Kim. EMBO J 2007
547
12

Argonaute-bound small RNAs from promoter-proximal RNA polymerase II.
Jesse R Zamudio, Timothy J Kelly, Phillip A Sharp. Cell 2014
79
15

Making RISC.
Tomoko Kawamata, Yukihide Tomari. Trends Biochem Sci 2010
332
12

Predicting effective microRNA target sites in mammalian mRNAs.
Vikram Agarwal, George W Bell, Jin-Wu Nam, David P Bartel. Elife 2015
12


Nuclear export of microRNA precursors.
Elsebet Lund, Stephan Güttinger, Angelo Calado, James E Dahlberg, Ulrike Kutay. Science 2004
12

Asymmetry in the assembly of the RNAi enzyme complex.
Dianne S Schwarz, György Hutvágner, Tingting Du, Zuoshang Xu, Neil Aronin, Phillip D Zamore. Cell 2003
12

Structure of Human DROSHA.
S Chul Kwon, Tuan Anh Nguyen, Yeon-Gil Choi, Myung Hyun Jo, Sungchul Hohng, V Narry Kim, Jae-Sung Woo. Cell 2016
121
11

Regulation of microRNA biogenesis and its crosstalk with other cellular pathways.
Thomas Treiber, Nora Treiber, Gunter Meister. Nat Rev Mol Cell Biol 2019
544
11

Hsc70/Hsp90 chaperone machinery mediates ATP-dependent RISC loading of small RNA duplexes.
Shintaro Iwasaki, Maki Kobayashi, Mayuko Yoda, Yuriko Sakaguchi, Susumu Katsuma, Tsutomu Suzuki, Yukihide Tomari. Mol Cell 2010
299
10

TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing.
Thimmaiah P Chendrimada, Richard I Gregory, Easwari Kumaraswamy, Jessica Norman, Neil Cooch, Kazuko Nishikura, Ramin Shiekhattar. Nature 2005
10

Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing.
A Grishok, A E Pasquinelli, D Conte, N Li, S Parrish, I Ha, D L Baillie, A Fire, G Ruvkun, C C Mello. Cell 2001
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.