A citation-based method for searching scientific literature

Oliver P Ernst, David T Lodowski, Marcus Elstner, Peter Hegemann, Leonid S Brown, Hideki Kandori. Chem Rev 2014
Times Cited: 493







List of co-cited articles
789 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Microbial Rhodopsins: Diversity, Mechanisms, and Optogenetic Applications.
Elena G Govorunova, Oleg A Sineshchekov, Hai Li, John L Spudich. Annu Rev Biochem 2017
115
29

A light-driven sodium ion pump in marine bacteria.
Keiichi Inoue, Hikaru Ono, Rei Abe-Yoshizumi, Susumu Yoshizawa, Hiroyasu Ito, Kazuhiro Kogure, Hideki Kandori. Nat Commun 2013
201
27


Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
19

Channelrhodopsin-1: a light-gated proton channel in green algae.
Georg Nagel, Doris Ollig, Markus Fuhrmann, Suneel Kateriya, Anna Maria Musti, Ernst Bamberg, Peter Hegemann. Science 2002
587
18

Channelrhodopsin-2, a directly light-gated cation-selective membrane channel.
Georg Nagel, Tanjef Szellas, Wolfram Huhn, Suneel Kateriya, Nona Adeishvili, Peter Berthold, Doris Ollig, Peter Hegemann, Ernst Bamberg. Proc Natl Acad Sci U S A 2003
18

Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump.
Hideaki E Kato, Keiichi Inoue, Rei Abe-Yoshizumi, Yoshitaka Kato, Hikaru Ono, Masae Konno, Shoko Hososhima, Toru Ishizuka, Mohammad Razuanul Hoque, Hirofumi Kunitomo,[...]. Nature 2015
110
16

A natural light-driven inward proton pump.
Keiichi Inoue, Shota Ito, Yoshitaka Kato, Yurika Nomura, Mikihiro Shibata, Takayuki Uchihashi, Satoshi P Tsunoda, Hideki Kandori. Nat Commun 2016
54
29

A distinct abundant group of microbial rhodopsins discovered using functional metagenomics.
Alina Pushkarev, Keiichi Inoue, Shirley Larom, José Flores-Uribe, Manish Singh, Masae Konno, Sahoko Tomida, Shota Ito, Ryoko Nakamura, Satoshi P Tsunoda,[...]. Nature 2018
68
23

Bacterial rhodopsin: evidence for a new type of phototrophy in the sea.
O Béjà, L Aravind, E V Koonin, M T Suzuki, A Hadd, L P Nguyen, S B Jovanovich, C M Gates, R A Feldman, J L Spudich,[...]. Science 2000
830
15

Bacteriorhodopsin.
Janos K Lanyi. Annu Rev Physiol 2004
347
14

Structure of bacteriorhodopsin at 1.55 A resolution.
H Luecke, B Schobert, H T Richter, J P Cartailler, J K Lanyi. J Mol Biol 1999
13

Independent optical excitation of distinct neural populations.
Nathan C Klapoetke, Yasunobu Murata, Sung Soo Kim, Stefan R Pulver, Amanda Birdsey-Benson, Yong Ku Cho, Tania K Morimoto, Amy S Chuong, Eric J Carpenter, Zhijian Tian,[...]. Nat Methods 2014
855
13

A three-dimensional movie of structural changes in bacteriorhodopsin.
Eriko Nango, Antoine Royant, Minoru Kubo, Takanori Nakane, Cecilia Wickstrand, Tetsunari Kimura, Tomoyuki Tanaka, Kensuke Tono, Changyong Song, Rie Tanaka,[...]. Science 2016
168
13

Retinal isomerization in bacteriorhodopsin captured by a femtosecond x-ray laser.
Przemyslaw Nogly, Tobias Weinert, Daniel James, Sergio Carbajo, Dmitry Ozerov, Antonia Furrer, Dardan Gashi, Veniamin Borin, Petr Skopintsev, Kathrin Jaeger,[...]. Science 2018
114
12

NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics.
Elena G Govorunova, Oleg A Sineshchekov, Roger Janz, Xiaoqin Liu, John L Spudich. Science 2015
265
12

The microbial opsin family of optogenetic tools.
Feng Zhang, Johannes Vierock, Ofer Yizhar, Lief E Fenno, Satoshi Tsunoda, Arash Kianianmomeni, Matthias Prigge, Andre Berndt, John Cushman, Jürgen Polle,[...]. Cell 2011
294
12

The role of protein-bound water molecules in microbial rhodopsins.
Klaus Gerwert, Erik Freier, Steffen Wolf. Biochim Biophys Acta 2014
78
15

Light-driven ion-translocating rhodopsins in marine bacteria.
Keiichi Inoue, Yoshitaka Kato, Hideki Kandori. Trends Microbiol 2015
64
18

Structural insights into ion conduction by channelrhodopsin 2.
Oleksandr Volkov, Kirill Kovalev, Vitaly Polovinkin, Valentin Borshchevskiy, Christian Bamann, Roman Astashkin, Egor Marin, Alexander Popov, Taras Balandin, Dieter Willbold,[...]. Science 2017
68
16

Biophysics of Channelrhodopsin.
Franziska Schneider, Christiane Grimm, Peter Hegemann. Annu Rev Biophys 2015
93
11

Ion-pumping microbial rhodopsins.
Hideki Kandori. Front Mol Biosci 2015
60
18

Optogenetics.
Karl Deisseroth. Nat Methods 2011
850
10

High-performance genetically targetable optical neural silencing by light-driven proton pumps.
Brian Y Chow, Xue Han, Allison S Dobry, Xiaofeng Qian, Amy S Chuong, Mingjie Li, Michael A Henninger, Gabriel M Belfort, Yingxi Lin, Patrick E Monahan,[...]. Nature 2010
703
10

Light-Driven Sodium-Pumping Rhodopsin: A New Concept of Active Transport.
Hideki Kandori, Keiichi Inoue, Satoshi P Tsunoda. Chem Rev 2018
30
33

Crystal structure of a light-driven sodium pump.
Ivan Gushchin, Vitaly Shevchenko, Vitaly Polovinkin, Kirill Kovalev, Alexey Alekseev, Ekaterina Round, Valentin Borshchevskiy, Taras Balandin, Alexander Popov, Thomas Gensch,[...]. Nat Struct Mol Biol 2015
91
10

Characterization of a Cyanobacterial Chloride-pumping Rhodopsin and Its Conversion into a Proton Pump.
Takatoshi Hasemi, Takashi Kikukawa, Naoki Kamo, Makoto Demura. J Biol Chem 2016
37
27

A photochromic histidine kinase rhodopsin (HKR1) that is bimodally switched by ultraviolet and blue light.
Meike Luck, Tilo Mathes, Sara Bruun, Roman Fudim, Rolf Hagedorn, Tra My Tran Nguyen, Suneel Kateriya, John T M Kennis, Peter Hildebrandt, Peter Hegemann. J Biol Chem 2012
70
12

Multimodal fast optical interrogation of neural circuitry.
Feng Zhang, Li-Ping Wang, Martin Brauner, Jana F Liewald, Kenneth Kay, Natalie Watzke, Phillip G Wood, Ernst Bamberg, Georg Nagel, Alexander Gottschalk,[...]. Nature 2007
9

ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation.
John Y Lin, Per Magne Knutsen, Arnaud Muller, David Kleinfeld, Roger Y Tsien. Nat Neurosci 2013
404
9

Crystal structure of the channelrhodopsin light-gated cation channel.
Hideaki E Kato, Feng Zhang, Ofer Yizhar, Charu Ramakrishnan, Tomohiro Nishizawa, Kunio Hirata, Jumpei Ito, Yusuke Aita, Tomoya Tsukazaki, Shigehiko Hayashi,[...]. Nature 2012
298
9

Evolution of opsins and phototransduction.
Yoshinori Shichida, Take Matsuyama. Philos Trans R Soc Lond B Biol Sci 2009
200
8

Oligomeric states of microbial rhodopsins determined by high-speed atomic force microscopy and circular dichroic spectroscopy.
Mikihiro Shibata, Keiichi Inoue, Kento Ikeda, Masae Konno, Manish Singh, Chihiro Kataoka, Rei Abe-Yoshizumi, Hideki Kandori, Takayuki Uchihashi. Sci Rep 2018
30
26

Distortion and a Strong Hydrogen Bond in the Retinal Chromophore Enable Sodium-Ion Transport by the Sodium-Ion Pump KR2.
Nao Nishimura, Misao Mizuno, Hideki Kandori, Yasuhisa Mizutani. J Phys Chem B 2019
12
66

The development and application of optogenetics.
Lief Fenno, Ofer Yizhar, Karl Deisseroth. Annu Rev Neurosci 2011
929
8

A unique choanoflagellate enzyme rhodopsin exhibits light-dependent cyclic nucleotide phosphodiesterase activity.
Kazuho Yoshida, Satoshi P Tsunoda, Leonid S Brown, Hideki Kandori. J Biol Chem 2017
36
22

Demonstration of a sensory rhodopsin in eubacteria.
Kwang-Hwan Jung, Vishwa D Trivedi, John L Spudich. Mol Microbiol 2003
171
8


A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.
David M Needham, Susumu Yoshizawa, Toshiaki Hosaka, Camille Poirier, Chang Jae Choi, Elisabeth Hehenberger, Nicholas A T Irwin, Susanne Wilken, Cheuk-Man Yung, Charles Bachy,[...]. Proc Natl Acad Sci U S A 2019
32
25

Energetics and dynamics of a light-driven sodium-pumping rhodopsin.
Carl-Mikael Suomivuori, Ana P Gamiz-Hernandez, Dage Sundholm, Ville R I Kaila. Proc Natl Acad Sci U S A 2017
41
19

Time-resolved FTIR study of light-driven sodium pump rhodopsins.
Hui-Fen Chen, Keiichi Inoue, Hikaru Ono, Rei Abe-Yoshizumi, Akimori Wada, Hideki Kandori. Phys Chem Chem Phys 2018
14
57

Red-shifting mutation of light-driven sodium-pump rhodopsin.
Keiichi Inoue, María Del Carmen Marín, Sahoko Tomida, Ryoko Nakamura, Yuta Nakajima, Massimo Olivucci, Hideki Kandori. Nat Commun 2019
20
40

Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii.
Oleg A Sineshchekov, Kwang-Hwan Jung, John L Spudich. Proc Natl Acad Sci U S A 2002
329
8

Inward H+ pump xenorhodopsin: Mechanism and alternative optogenetic approach.
Vitaly Shevchenko, Thomas Mager, Kirill Kovalev, Vitaly Polovinkin, Alexey Alekseev, Josephine Juettner, Igor Chizhov, Christian Bamann, Charlotte Vavourakis, Rohit Ghai,[...]. Sci Adv 2017
31
25


Conversion of bacteriorhodopsin into a chloride ion pump.
J Sasaki, L S Brown, Y S Chon, H Kandori, A Maeda, R Needleman, J K Lanyi. Science 1995
174
8

Water-containing hydrogen-bonding network in the active center of channelrhodopsin.
Shota Ito, Hideaki E Kato, Reiya Taniguchi, Tatsuya Iwata, Osamu Nureki, Hideki Kandori. J Am Chem Soc 2014
39
20

Femtosecond-to-millisecond structural changes in a light-driven sodium pump.
Petr Skopintsev, David Ehrenberg, Tobias Weinert, Daniel James, Rajiv K Kar, Philip J M Johnson, Dmitry Ozerov, Antonia Furrer, Isabelle Martiel, Florian Dworkowski,[...]. Nature 2020
19
42

Crystal structure of rhodopsin: A G protein-coupled receptor.
K Palczewski, T Kumasaka, T Hori, C A Behnke, H Motoshima, B A Fox, I Le Trong, D C Teller, T Okada, R E Stenkamp,[...]. Science 2000
7

Proteorhodopsin.
Christian Bamann, Ernst Bamberg, Josef Wachtveitl, Clemens Glaubitz. Biochim Biophys Acta 2014
69
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.