A citation-based method for searching scientific literature

Kiichi Nakahira, Sun-Young Kyung, Angela J Rogers, Lee Gazourian, Sojung Youn, Anthony F Massaro, Carolina Quintana, Juan C Osorio, Zhaoxi Wang, Yang Zhao, Laurie A Lawler, Jason D Christie, Nuala J Meyer, Finnian R Mc Causland, Sushrut S Waikar, Aaron B Waxman, Raymond T Chung, Raphael Bueno, Ivan O Rosas, Laura E Fredenburgh, Rebecca M Baron, David C Christiani, Gary M Hunninghake, Augustine M K Choi. PLoS Med 2013
Times Cited: 228







List of co-cited articles
828 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Circulating mitochondrial DAMPs cause inflammatory responses to injury.
Qin Zhang, Mustafa Raoof, Yu Chen, Yuka Sumi, Tolga Sursal, Wolfgang Junger, Karim Brohi, Kiyoshi Itagaki, Carl J Hauser. Nature 2010
55

Autophagy proteins regulate innate immune responses by inhibiting the release of mitochondrial DNA mediated by the NALP3 inflammasome.
Kiichi Nakahira, Jeffrey Adam Haspel, Vijay A K Rathinam, Seon-Jin Lee, Tamas Dolinay, Hilaire C Lam, Joshua A Englert, Marlene Rabinovitch, Manuela Cernadas, Hong Pyo Kim,[...]. Nat Immunol 2011
20

Elevated levels of plasma mitochondrial DNA DAMPs are linked to clinical outcome in severely injured human subjects.
Jon D Simmons, Yann-Leei Lee, Sujata Mulekar, Jamie L Kuck, Sidney B Brevard, Richard P Gonzalez, Mark N Gillespie, William O Richards. Ann Surg 2013
127
17

Mitochondrial DNA in innate immune responses and inflammatory pathology.
A Phillip West, Gerald S Shadel. Nat Rev Immunol 2017
277
16

Plasma nuclear and mitochondrial DNA levels as predictors of outcome in severe sepsis patients in the emergency room.
Chia-Te Kung, Sheng-Yuan Hsiao, Tsung-Cheng Tsai, Chih-Min Su, Wen-Neng Chang, Chi-Ren Huang, Hung-Chen Wang, Wei-Che Lin, Hsueh-Wen Chang, Yu-Jun Lin,[...]. J Transl Med 2012
82
18

The Third International Consensus Definitions for Sepsis and Septic Shock (Sepsis-3).
Mervyn Singer, Clifford S Deutschman, Christopher Warren Seymour, Manu Shankar-Hari, Djillali Annane, Michael Bauer, Rinaldo Bellomo, Gordon R Bernard, Jean-Daniel Chiche, Craig M Coopersmith,[...]. JAMA 2016
14


Platelets release mitochondria serving as substrate for bactericidal group IIA-secreted phospholipase A2 to promote inflammation.
Luc H Boudreau, Anne-Claire Duchez, Nathalie Cloutier, Denis Soulet, Nicolas Martin, James Bollinger, Alexandre Paré, Matthieu Rousseau, Gajendra S Naika, Tania Lévesque,[...]. Blood 2014
263
11

Circulating cell-free mitochondrial DNA, but not leukocyte mitochondrial DNA copy number, is elevated in major depressive disorder.
Daniel Lindqvist, Owen M Wolkowitz, Martin Picard, Lars Ohlsson, Francesco S Bersani, Johan Fernström, Åsa Westrin, Christina M Hough, Jue Lin, Victor I Reus,[...]. Neuropsychopharmacology 2018
52
21

Mitochondrial DNA stress primes the antiviral innate immune response.
A Phillip West, William Khoury-Hanold, Matthew Staron, Michal C Tal, Cristiana M Pineda, Sabine M Lang, Megan Bestwick, Brett A Duguay, Nuno Raimundo, Donna A MacDuff,[...]. Nature 2015
618
11

Mitochondrial DNA in Sepsis.
John S Harrington, Augustine M K Choi, Kiichi Nakahira. Curr Opin Crit Care 2017
32
34

Mitochondrial DNA released by trauma induces neutrophil extracellular traps.
Kiyoshi Itagaki, Elzbieta Kaczmarek, Yen Ting Lee, I Tien Tang, Burak Isal, Yashar Adibnia, Nicola Sandler, Melissa J Grimm, Brahm H Segal, Leo E Otterbein,[...]. PLoS One 2015
87
11

Oxidized mitochondrial DNA activates the NLRP3 inflammasome during apoptosis.
Kenichi Shimada, Timothy R Crother, Justin Karlin, Jargalsaikhan Dagvadorj, Norika Chiba, Shuang Chen, V Krishnan Ramanujan, Andrea J Wolf, Laurent Vergnes, David M Ojcius,[...]. Immunity 2012
981
10


Plasma levels of mitochondrial DNA in patients presenting to the emergency department with sepsis.
Michael A Puskarich, Nathan I Shapiro, Stephen Trzeciak, Jeffrey A Kline, Alan E Jones. Shock 2012
42
23

Mitochondrial DNA that escapes from autophagy causes inflammation and heart failure.
Takafumi Oka, Shungo Hikoso, Osamu Yamaguchi, Manabu Taneike, Toshihiro Takeda, Takahito Tamai, Jota Oyabu, Tomokazu Murakawa, Hiroyuki Nakayama, Kazuhiko Nishida,[...]. Nature 2012
616
10

Viable neutrophils release mitochondrial DNA to form neutrophil extracellular traps.
S Yousefi, C Mihalache, E Kozlowski, I Schmid, H U Simon. Cell Death Differ 2009
449
10

Mitochondrial DNA induces inflammation and increases TLR9/NF-κB expression in lung tissue.
Jian-Zheng Zhang, Zhi Liu, Jia Liu, Ji-Xin Ren, Tian-Sheng Sun. Int J Mol Med 2014
118
9

Plasma mitochondrial DNA levels in patients with trauma and severe sepsis: time course and the association with clinical status.
Satoshi Yamanouchi, Daisuke Kudo, Mitsuhiro Yamada, Noriko Miyagawa, Hajime Furukawa, Shigeki Kushimoto. J Crit Care 2013
67
13

Mitochondrial DNA and Toll-Like Receptor-9 Are Associated With Mortality in Critically Ill Patients.
Konstantin A Krychtiuk, Sarah Ruhittel, Philipp J Hohensinner, Lorenz Koller, Christoph Kaun, Max Lenz, Benedikt Bauer, Lisa Wutzlhofer, Dominik F Draxler, Gerald Maurer,[...]. Crit Care Med 2015
39
23

Inflammasome-regulated cytokines are critical mediators of acute lung injury.
Tamás Dolinay, Young Sam Kim, Judie Howrylak, Gary M Hunninghake, Chang Hyeok An, Laura Fredenburgh, Anthony F Massaro, Angela Rogers, Lee Gazourian, Kiichi Nakahira,[...]. Am J Respir Crit Care Med 2012
304
9

Mitochondrial DNA: An Endogenous Trigger for Immune Paralysis.
Simon T Schäfer, Lars Franken, Michael Adamzik, Beatrix Schumak, André Scherag, Andrea Engler, Niels Schönborn, Jennifer Walden, Susanne Koch, Hideo A Baba,[...]. Anesthesiology 2016
44
20

Association between mitochondrial dysfunction and severity and outcome of septic shock.
David Brealey, Michael Brand, Iain Hargreaves, Simon Heales, John Land, Ryszard Smolenski, Nathan A Davies, Chris E Cooper, Mervyn Singer. Lancet 2002
858
9

Increased plasma levels of circulating cell-free mitochondrial DNA in suicide attempters: associations with HPA-axis hyperactivity.
D Lindqvist, J Fernström, C Grudet, L Ljunggren, L Träskman-Bendz, L Ohlsson, Å Westrin. Transl Psychiatry 2016
42
21

Oxidized mitochondrial nucleoids released by neutrophils drive type I interferon production in human lupus.
Simone Caielli, Shruti Athale, Bojana Domic, Elise Murat, Manjari Chandra, Romain Banchereau, Jeanine Baisch, Kate Phelps, Sandra Clayton, Mei Gong,[...]. J Exp Med 2016
183
9

Mitochondria in innate immune responses.
A Phillip West, Gerald S Shadel, Sankar Ghosh. Nat Rev Immunol 2011
676
8

Hepatocyte mitochondrial DNA drives nonalcoholic steatohepatitis by activation of TLR9.
Irma Garcia-Martinez, Nicola Santoro, Yonglin Chen, Rafaz Hoque, Xinshou Ouyang, Sonia Caprio, Mark J Shlomchik, Robert Lee Coffman, Albert Candia, Wajahat Zafar Mehal. J Clin Invest 2016
198
8

Epidemiology, Patterns of Care, and Mortality for Patients With Acute Respiratory Distress Syndrome in Intensive Care Units in 50 Countries.
Giacomo Bellani, John G Laffey, Tài Pham, Eddy Fan, Laurent Brochard, Andres Esteban, Luciano Gattinoni, Frank van Haren, Anders Larsson, Daniel F McAuley,[...]. JAMA 2016
8

Mitochondria in lung biology and pathology: more than just a powerhouse.
Paul T Schumacker, Mark N Gillespie, Kiichi Nakahira, Augustine M K Choi, Elliott D Crouser, Claude A Piantadosi, Jahar Bhattacharya. Am J Physiol Lung Cell Mol Physiol 2014
94
8

Extracellular mitochondrial DNA and oxidatively damaged DNA in synovial fluid of patients with rheumatoid arthritis.
Shahin Hajizadeh, Jeroen DeGroot, Johan M TeKoppele, Andrej Tarkowski, L Vincent Collins. Arthritis Res Ther 2003
95
8

Acute psychological stress increases serum circulating cell-free mitochondrial DNA.
Caroline Trumpff, Anna L Marsland, Carla Basualto-Alarcón, James L Martin, Judith E Carroll, Gabriel Sturm, Amy E Vincent, Eugene V Mosharov, Zhenglong Gu, Brett A Kaufman,[...]. Psychoneuroendocrinology 2019
24
33

Catapult-like release of mitochondrial DNA by eosinophils contributes to antibacterial defense.
Shida Yousefi, Jeffrey A Gold, Nicola Andina, James J Lee, Ann M Kelly, Evelyne Kozlowski, Inès Schmid, Alex Straumann, Janine Reichenbach, Gerald J Gleich,[...]. Nat Med 2008
545
7

Circulatory mitochondrial DNA is a pro-inflammatory agent in maintenance hemodialysis patients.
Hongdi Cao, Hong Ye, Zhiping Sun, Xia Shen, Zongwei Song, Xiaochun Wu, Weichun He, Chunsun Dai, Junwei Yang. PLoS One 2014
35
20

Emerging role of damage-associated molecular patterns derived from mitochondria in inflammation.
Dmitri V Krysko, Patrizia Agostinis, Olga Krysko, Abhishek D Garg, Claus Bachert, Bart N Lambrecht, Peter Vandenabeele. Trends Immunol 2011
391
7

Plasma Mitochondrial DNA--a Novel DAMP in Pediatric Sepsis.
Valentina Di Caro, Thomas D Walko, R Aaron Bola, John D Hong, Diana Pang, Victor Hsue, Alicia K Au, E Scott Halstead, Joseph A Carcillo, Robert S B Clark,[...]. Shock 2016
27
25

Acute respiratory distress syndrome: the Berlin Definition.
V Marco Ranieri, Gordon D Rubenfeld, B Taylor Thompson, Niall D Ferguson, Ellen Caldwell, Eddy Fan, Luigi Camporota, Arthur S Slutsky. JAMA 2012
7

Advances in the understanding of mitochondrial DNA as a pathogenic factor in inflammatory diseases.
Ray K Boyapati, Arina Tamborska, David A Dorward, Gwo-Tzer Ho. F1000Res 2017
72
9

The source of cell-free mitochondrial DNA in trauma and potential therapeutic strategies.
Kabilan Thurairajah, Gabrielle Daisy Briggs, Zsolt Janos Balogh. Eur J Trauma Emerg Surg 2018
30
23


Neutrophil extracellular traps enriched in oxidized mitochondrial DNA are interferogenic and contribute to lupus-like disease.
Christian Lood, Luz P Blanco, Monica M Purmalek, Carmelo Carmona-Rivera, Suk S De Ravin, Carolyne K Smith, Harry L Malech, Jeffrey A Ledbetter, Keith B Elkon, Mariana J Kaplan. Nat Med 2016
530
7

Necroptosis: the release of damage-associated molecular patterns and its physiological relevance.
Agnieszka Kaczmarek, Peter Vandenabeele, Dmitri V Krysko. Immunity 2013
658
7

BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Kate McArthur, Lachlan W Whitehead, John M Heddleston, Lucy Li, Benjamin S Padman, Viola Oorschot, Niall D Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin,[...]. Science 2018
217
7

Cell-free DNA release under psychosocial and physical stress conditions.
E M Hummel, E Hessas, S Müller, T Beiter, M Fisch, A Eibl, O T Wolf, B Giebel, P Platen, R Kumsta,[...]. Transl Psychiatry 2018
37
18


Plasma mitochondrial DNA and metabolomic alterations in severe critical illness.
Pär I Johansson, Kiichi Nakahira, Angela J Rogers, Michael J McGeachie, Rebecca M Baron, Laura E Fredenburgh, John Harrington, Augustine M K Choi, Kenneth B Christopher. Crit Care 2018
15
46

Mitochondrial DAMPs increase endothelial permeability through neutrophil dependent and independent pathways.
Shiqin Sun, Tolga Sursal, Yasaman Adibnia, Cong Zhao, Yi Zheng, Haipeng Li, Leo E Otterbein, Carl J Hauser, Kiyoshi Itagaki. PLoS One 2013
122
7



Significance of Serum mtDNA Concentration in Lung Injury Induced by Hip Fracture.
Li Gan, Xiaobin Chen, Tiansheng Sun, Qi Li, Ruhui Zhang, Jianzheng Zhang, Jianfeng Zhong. Shock 2015
24
25

The plasma mitochondrial DNA is an independent predictor for post-traumatic systemic inflammatory response syndrome.
Xiaoling Gu, Yanwen Yao, Guannan Wu, Tangfeng Lv, Liang Luo, Yong Song. PLoS One 2013
52
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.