A citation-based method for searching scientific literature

José A Martina, Heba I Diab, Li Lishu, Lim Jeong-A, Simona Patange, Nina Raben, Rosa Puertollano. Sci Signal 2014
Times Cited: 348







List of co-cited articles
1534 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


TFEB links autophagy to lysosomal biogenesis.
Carmine Settembre, Chiara Di Malta, Vinicia Assunta Polito, Moises Garcia Arencibia, Francesco Vetrini, Serkan Erdin, Serpil Uckac Erdin, Tuong Huynh, Diego Medina, Pasqualina Colella,[...]. Science 2011
61

A gene network regulating lysosomal biogenesis and function.
Marco Sardiello, Michela Palmieri, Alberto di Ronza, Diego Luis Medina, Marta Valenza, Vincenzo Alessandro Gennarino, Chiara Di Malta, Francesca Donaudy, Valerio Embrione, Roman S Polishchuk,[...]. Science 2009
48

A lysosome-to-nucleus signalling mechanism senses and regulates the lysosome via mTOR and TFEB.
Carmine Settembre, Roberto Zoncu, Diego L Medina, Francesco Vetrini, Serkan Erdin, SerpilUckac Erdin, Tuong Huynh, Mathieu Ferron, Gerard Karsenty, Michel C Vellard,[...]. EMBO J 2012
45

The transcription factor TFEB links mTORC1 signaling to transcriptional control of lysosome homeostasis.
Agnes Roczniak-Ferguson, Constance S Petit, Florian Froehlich, Sharon Qian, Jennifer Ky, Brittany Angarola, Tobias C Walther, Shawn M Ferguson. Sci Signal 2012
741
44

MTORC1 functions as a transcriptional regulator of autophagy by preventing nuclear transport of TFEB.
Jose A Martina, Yong Chen, Marjan Gucek, Rosa Puertollano. Autophagy 2012
681
42

Lysosomal calcium signalling regulates autophagy through calcineurin and ​TFEB.
Diego L Medina, Simone Di Paola, Ivana Peluso, Andrea Armani, Diego De Stefani, Rossella Venditti, Sandro Montefusco, Anna Scotto-Rosato, Carolina Prezioso, Alison Forrester,[...]. Nat Cell Biol 2015
682
31


TFEB and TFE3: Linking Lysosomes to Cellular Adaptation to Stress.
Nina Raben, Rosa Puertollano. Annu Rev Cell Dev Biol 2016
200
26

Characterization of the CLEAR network reveals an integrated control of cellular clearance pathways.
Michela Palmieri, Soren Impey, Hyojin Kang, Alberto di Ronza, Carl Pelz, Marco Sardiello, Andrea Ballabio. Hum Mol Genet 2011
523
26

TFEB controls cellular lipid metabolism through a starvation-induced autoregulatory loop.
Carmine Settembre, Rossella De Cegli, Gelsomina Mansueto, Pradip K Saha, Francesco Vetrini, Orane Visvikis, Tuong Huynh, Annamaria Carissimo, Donna Palmer, Tiemo Jürgen Klisch,[...]. Nat Cell Biol 2013
569
24

The complex relationship between TFEB transcription factor phosphorylation and subcellular localization.
Rosa Puertollano, Shawn M Ferguson, James Brugarolas, Andrea Ballabio. EMBO J 2018
192
23

TFEB and TFE3 cooperate in the regulation of the innate immune response in activated macrophages.
Nunzia Pastore, Owen A Brady, Heba I Diab, José A Martina, Lu Sun, Tuong Huynh, Jeong-A Lim, Hossein Zare, Nina Raben, Andrea Ballabio,[...]. Autophagy 2016
149
22

Transcriptional control of autophagy-lysosome function drives pancreatic cancer metabolism.
Rushika M Perera, Svetlana Stoykova, Brandon N Nicolay, Kenneth N Ross, Julien Fitamant, Myriam Boukhali, Justine Lengrand, Vikram Deshpande, Martin K Selig, Cristina R Ferrone,[...]. Nature 2015
461
21

AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1.
Joungmok Kim, Mondira Kundu, Benoit Viollet, Kun-Liang Guan. Nat Cell Biol 2011
21

mTORC1-independent TFEB activation via Akt inhibition promotes cellular clearance in neurodegenerative storage diseases.
Michela Palmieri, Rituraj Pal, Hemanth R Nelvagal, Parisa Lotfi, Gary R Stinnett, Michelle L Seymour, Arindam Chaudhury, Lakshya Bajaj, Vitaliy V Bondar, Laura Bremner,[...]. Nat Commun 2017
235
20

Molecular genetics and cellular features of TFE3 and TFEB fusion kidney cancers.
Eric C Kauffman, Christopher J Ricketts, Soroush Rais-Bahrami, Youfeng Yang, Maria J Merino, Donald P Bottaro, Ramaprasad Srinivasan, W Marston Linehan. Nat Rev Urol 2014
161
19

A substrate-specific mTORC1 pathway underlies Birt-Hogg-Dubé syndrome.
Gennaro Napolitano, Chiara Di Malta, Alessandra Esposito, Mariana E G de Araujo, Salvatore Pece, Giovanni Bertalot, Maria Matarese, Valerio Benedetti, Angela Zampelli, Taras Stasyk,[...]. Nature 2020
70
27

mTOR-dependent phosphorylation controls TFEB nuclear export.
Gennaro Napolitano, Alessandra Esposito, Heejun Choi, Maria Matarese, Valerio Benedetti, Chiara Di Malta, Jlenia Monfregola, Diego Luis Medina, Jennifer Lippincott-Schwartz, Andrea Ballabio. Nat Commun 2018
131
18

TFEB and TFE3 are novel components of the integrated stress response.
José A Martina, Heba I Diab, Owen A Brady, Rosa Puertollano. EMBO J 2016
147
18

Protein kinase C controls lysosome biogenesis independently of mTORC1.
Yang Li, Meng Xu, Xiao Ding, Chen Yan, Zhiqin Song, Lianwan Chen, Xiahe Huang, Xin Wang, Youli Jian, Guihua Tang,[...]. Nat Cell Biol 2016
182
17

TFE3 regulates whole-body energy metabolism in cooperation with TFEB.
Nunzia Pastore, Anna Vainshtein, Tiemo J Klisch, Andrea Armani, Tuong Huynh, Niculin J Herz, Elena V Polishchuk, Marco Sandri, Andrea Ballabio. EMBO Mol Med 2017
58
29

Ragulator-Rag complex targets mTORC1 to the lysosomal surface and is necessary for its activation by amino acids.
Yasemin Sancak, Liron Bar-Peled, Roberto Zoncu, Andrew L Markhard, Shigeyuki Nada, David M Sabatini. Cell 2010
17

TFEB at a glance.
Gennaro Napolitano, Andrea Ballabio. J Cell Sci 2016
367
17

mTORC1 senses lysosomal amino acids through an inside-out mechanism that requires the vacuolar H(+)-ATPase.
Roberto Zoncu, Liron Bar-Peled, Alejo Efeyan, Shuyu Wang, Yasemin Sancak, David M Sabatini. Science 2011
16

microphthalmia, a critical factor in melanocyte development, defines a discrete transcription factor family.
T J Hemesath, E Steingrímsson, G McGill, M J Hansen, J Vaught, C A Hodgkinson, H Arnheiter, N G Copeland, N A Jenkins, D E Fisher. Genes Dev 1994
516
14

MITF drives endolysosomal biogenesis and potentiates Wnt signaling in melanoma cells.
Diego Ploper, Vincent F Taelman, Lidia Robert, Brian S Perez, Björn Titz, Hsiao-Wang Chen, Thomas G Graeber, Erika von Euw, Antoni Ribas, Edward M De Robertis. Proc Natl Acad Sci U S A 2015
144
14

The transcription factors TFE3 and TFEB amplify p53 dependent transcriptional programs in response to DNA damage.
Owen A Brady, Eutteum Jeong, José A Martina, Mehdi Pirooznia, Ilker Tunc, Rosa Puertollano. Elife 2018
47
29

AMPK phosphorylation of raptor mediates a metabolic checkpoint.
Dana M Gwinn, David B Shackelford, Daniel F Egan, Maria M Mihaylova, Annabelle Mery, Debbie S Vasquez, Benjamin E Turk, Reuben J Shaw. Mol Cell 2008
14

Transcriptional activation of lysosomal exocytosis promotes cellular clearance.
Diego L Medina, Alessandro Fraldi, Valentina Bouche, Fabio Annunziata, Gelsomina Mansueto, Carmine Spampanato, Claudia Puri, Antonella Pignata, Jose A Martina, Marco Sardiello,[...]. Dev Cell 2011
423
14

Signals from the lysosome: a control centre for cellular clearance and energy metabolism.
Carmine Settembre, Alessandro Fraldi, Diego L Medina, Andrea Ballabio. Nat Rev Mol Cell Biol 2013
924
14

The Rag GTPases bind raptor and mediate amino acid signaling to mTORC1.
Yasemin Sancak, Timothy R Peterson, Yoav D Shaul, Robert A Lindquist, Carson C Thoreen, Liron Bar-Peled, David M Sabatini. Science 2008
14

MiT/TFE transcription factors are activated during mitophagy downstream of Parkin and Atg5.
Catherine L Nezich, Chunxin Wang, Adam I Fogel, Richard J Youle. J Cell Biol 2015
170
13

Transcription factor EB (TFEB) is a new therapeutic target for Pompe disease.
Carmine Spampanato, Erin Feeney, Lishu Li, Monica Cardone, Jeong-A Lim, Fabio Annunziata, Hossein Zare, Roman Polishchuk, Rosa Puertollano, Giancarlo Parenti,[...]. EMBO Mol Med 2013
214
13

Structural mechanism of a Rag GTPase activation checkpoint by the lysosomal folliculin complex.
Rosalie E Lawrence, Simon A Fromm, Yangxue Fu, Adam L Yokom, Do Jin Kim, Ashley M Thelen, Lindsey N Young, Chun-Yan Lim, Avi J Samelson, James H Hurley,[...]. Science 2019
50
26

AMPK-SKP2-CARM1 signalling cascade in transcriptional regulation of autophagy.
Hi-Jai R Shin, Hyunkyung Kim, Sungryong Oh, Jun-Gi Lee, Minjung Kee, Hyun-Jeong Ko, Mi-Na Kweon, Kyoung-Jae Won, Sung Hee Baek. Nature 2016
236
13

Innate host defense requires TFEB-mediated transcription of cytoprotective and antimicrobial genes.
Orane Visvikis, Nnamdi Ihuegbu, Sid A Labed, Lyly G Luhachack, Anna-Maria F Alves, Amanda C Wollenberg, Lynda M Stuart, Gary D Stormo, Javier E Irazoqui. Immunity 2014
168
13

Transcription Factor EB Controls Metabolic Flexibility during Exercise.
Gelsomina Mansueto, Andrea Armani, Carlo Viscomi, Luca D'Orsi, Rossella De Cegli, Elena V Polishchuk, Costanza Lamperti, Ivano Di Meo, Vanina Romanello, Silvia Marchet,[...]. Cell Metab 2017
163
13


Multistep regulation of TFEB by MTORC1.
Silvia Vega-Rubin-de-Celis, Samuel Peña-Llopis, Meghan Konda, James Brugarolas. Autophagy 2017
99
12

STUB1 regulates TFEB-induced autophagy-lysosome pathway.
Youbao Sha, Lang Rao, Carmine Settembre, Andrea Ballabio, N Tony Eissa. EMBO J 2017
88
13

The Transcription Factors TFEB and TFE3 Link the FLCN-AMPK Signaling Axis to Innate Immune Response and Pathogen Resistance.
Leeanna El-Houjeiri, Elite Possik, Tarika Vijayaraghavan, Mathieu Paquette, José A Martina, Jalal M Kazan, Eric H Ma, Russell Jones, Paola Blanchette, Rosa Puertollano,[...]. Cell Rep 2019
50
24

Recruitment of folliculin to lysosomes supports the amino acid-dependent activation of Rag GTPases.
Constance S Petit, Agnes Roczniak-Ferguson, Shawn M Ferguson. J Cell Biol 2013
207
12

Lysosomal Signaling Licenses Embryonic Stem Cell Differentiation via Inactivation of Tfe3.
Florian Villegas, Daphné Lehalle, Daniela Mayer, Melanie Rittirsch, Michael B Stadler, Marietta Zinner, Daniel Olivieri, Pierre Vabres, Laurence Duplomb-Jego, Eveline S J M De Bont,[...]. Cell Stem Cell 2019
57
21

MiT/TFE Family of Transcription Factors, Lysosomes, and Cancer.
Rushika M Perera, Chiara Di Malta, Andrea Ballabio. Annu Rev Cancer Biol 2019
54
22

Transcriptional activation of RagD GTPase controls mTORC1 and promotes cancer growth.
Chiara Di Malta, Diletta Siciliano, Alessia Calcagni, Jlenia Monfregola, Simona Punzi, Nunzia Pastore, Andrea N Eastes, Oliver Davis, Rossella De Cegli, Angela Zampelli,[...]. Science 2017
106
12

The folliculin tumor suppressor is a GAP for the RagC/D GTPases that signal amino acid levels to mTORC1.
Zhi-Yang Tsun, Liron Bar-Peled, Lynne Chantranupong, Roberto Zoncu, Tim Wang, Choah Kim, Eric Spooner, David M Sabatini. Mol Cell 2013
329
12

Nutrient-dependent mTORC1 association with the ULK1-Atg13-FIP200 complex required for autophagy.
Nao Hosokawa, Taichi Hara, Takeshi Kaizuka, Chieko Kishi, Akito Takamura, Yutaka Miura, Shun-ichiro Iemura, Tohru Natsume, Kenji Takehana, Naoyuki Yamada,[...]. Mol Biol Cell 2009
12



Lysosomes as dynamic regulators of cell and organismal homeostasis.
Andrea Ballabio, Juan S Bonifacino. Nat Rev Mol Cell Biol 2020
271
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.