A citation-based method for searching scientific literature

Carl D Morrison, Pengyuan Liu, Anna Woloszynska-Read, Jianmin Zhang, Wei Luo, Maochun Qin, Wiam Bshara, Jeffrey M Conroy, Linda Sabatini, Peter Vedell, Donghai Xiong, Song Liu, Jianmin Wang, He Shen, Yinwei Li, Angela R Omilian, Annette Hill, Karen Head, Khurshid Guru, Dimiter Kunnev, Robert Leach, Kevin H Eng, Christopher Darlak, Christopher Hoeflich, Srividya Veeranki, Sean Glenn, Ming You, Steven C Pruitt, Candace S Johnson, Donald L Trump. Proc Natl Acad Sci U S A 2014
Times Cited: 62







List of co-cited articles
507 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Identification of distinct basal and luminal subtypes of muscle-invasive bladder cancer with different sensitivities to frontline chemotherapy.
Woonyoung Choi, Sima Porten, Seungchan Kim, Daniel Willis, Elizabeth R Plimack, Jean Hoffman-Censits, Beat Roth, Tiewei Cheng, Mai Tran, I-Ling Lee,[...]. Cancer Cell 2014
908
20

Massive genomic rearrangement acquired in a single catastrophic event during cancer development.
Philip J Stephens, Chris D Greenman, Beiyuan Fu, Fengtang Yang, Graham R Bignell, Laura J Mudie, Erin D Pleasance, King Wai Lau, David Beare, Lucy A Stebbings,[...]. Cell 2011
19

Whole-genome and whole-exome sequencing of bladder cancer identifies frequent alterations in genes involved in sister chromatid cohesion and segregation.
Guangwu Guo, Xiaojuan Sun, Chao Chen, Song Wu, Peide Huang, Zesong Li, Michael Dean, Yi Huang, Wenlong Jia, Quan Zhou,[...]. Nat Genet 2013
309
19

Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations.
Tobias Rausch, David T W Jones, Marc Zapatka, Adrian M Stütz, Thomas Zichner, Joachim Weischenfeldt, Natalie Jäger, Marc Remke, David Shih, Paul A Northcott,[...]. Cell 2012
535
17

A molecular taxonomy for urothelial carcinoma.
Gottfrid Sjödahl, Martin Lauss, Kristina Lövgren, Gunilla Chebil, Sigurdur Gudjonsson, Srinivas Veerla, Oliver Patschan, Mattias Aine, Mårten Fernö, Markus Ringnér,[...]. Clin Cancer Res 2012
460
14

Criteria for inference of chromothripsis in cancer genomes.
Jan O Korbel, Peter J Campbell. Cell 2013
303
14

Breakpoint profiling of 64 cancer genomes reveals numerous complex rearrangements spawned by homology-independent mechanisms.
Ankit Malhotra, Michael Lindberg, Gregory G Faust, Mitchell L Leibowitz, Royden A Clark, Ryan M Layer, Aaron R Quinlan, Ira M Hall. Genome Res 2013
122
14

Intrinsic subtypes of high-grade bladder cancer reflect the hallmarks of breast cancer biology.
Jeffrey S Damrauer, Katherine A Hoadley, David D Chism, Cheng Fan, Christopher J Tiganelli, Sara E Wobker, Jen Jen Yeh, Matthew I Milowsky, Gopa Iyer, Joel S Parker,[...]. Proc Natl Acad Sci U S A 2014
492
12

DNA breaks and chromosome pulverization from errors in mitosis.
Karen Crasta, Neil J Ganem, Regina Dagher, Alexandra B Lantermann, Elena V Ivanova, Yunfeng Pan, Luigi Nezi, Alexei Protopopov, Dipanjan Chowdhury, David Pellman. Nature 2012
729
12

Chromothripsis from DNA damage in micronuclei.
Cheng-Zhong Zhang, Alexander Spektor, Hauke Cornils, Joshua M Francis, Emily K Jackson, Shiwei Liu, Matthew Meyerson, David Pellman. Nature 2015
549
12

Punctuated evolution of prostate cancer genomes.
Sylvan C Baca, Davide Prandi, Michael S Lawrence, Juan Miguel Mosquera, Alessandro Romanel, Yotam Drier, Kyung Park, Naoki Kitabayashi, Theresa Y MacDonald, Mahmoud Ghandi,[...]. Cell 2013
747
11


Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder.
Yaoting Gui, Guangwu Guo, Yi Huang, Xueda Hu, Aifa Tang, Shengjie Gao, Renhua Wu, Chao Chen, Xianxin Li, Liang Zhou,[...]. Nat Genet 2011
508
11

Constitutional and somatic rearrangement of chromosome 21 in acute lymphoblastic leukaemia.
Yilong Li, Claire Schwab, Sarra Ryan, Elli Papaemmanuil, Hazel M Robinson, Patricia Jacobs, Anthony V Moorman, Sara Dyer, Julian Borrow, Mike Griffiths,[...]. Nature 2014
167
11

Sequencing of neuroblastoma identifies chromothripsis and defects in neuritogenesis genes.
Jan J Molenaar, Jan Koster, Danny A Zwijnenburg, Peter van Sluis, Linda J Valentijn, Ida van der Ploeg, Mohamed Hamdi, Johan van Nes, Bart A Westerman, Jennemiek van Arkel,[...]. Nature 2012
571
11

Chromothripsis and Kataegis Induced by Telomere Crisis.
John Maciejowski, Yilong Li, Nazario Bosco, Peter J Campbell, Titia de Lange. Cell 2015
332
11

Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy.
Cristina Balbás-Martínez, Ana Sagrera, Enrique Carrillo-de-Santa-Pau, Julie Earl, Mirari Márquez, Miguel Vazquez, Eleonora Lapi, Francesc Castro-Giner, Sergi Beltran, Mònica Bayés,[...]. Nat Genet 2013
172
9

EGFR as a potential therapeutic target for a subset of muscle-invasive bladder cancers presenting a basal-like phenotype.
Sandra Rebouissou, Isabelle Bernard-Pierrot, Aurélien de Reyniès, May-Linda Lepage, Clémentine Krucker, Elodie Chapeaublanc, Aurélie Hérault, Aurélie Kamoun, Aurélie Caillault, Eric Letouzé,[...]. Sci Transl Med 2014
190
9

Oncogenic FGFR3 gene fusions in bladder cancer.
Sarah V Williams, Carolyn D Hurst, Margaret A Knowles. Hum Mol Genet 2013
250
9

Intrinsic basal and luminal subtypes of muscle-invasive bladder cancer.
Woonyoung Choi, Bogdan Czerniak, Andrea Ochoa, Xiaoping Su, Arlene Siefker-Radtke, Colin Dinney, David J McConkey. Nat Rev Urol 2014
164
9

Advanced urothelial carcinoma: next-generation sequencing reveals diverse genomic alterations and targets of therapy.
Jeffrey S Ross, Kai Wang, Rami N Al-Rohil, Tipu Nazeer, Christine E Sheehan, Geoff A Otto, Jie He, Gary Palmer, Roman Yelensky, Doron Lipson,[...]. Mod Pathol 2014
105
9

Prevalence and co-occurrence of actionable genomic alterations in high-grade bladder cancer.
Gopa Iyer, Hikmat Al-Ahmadie, Nikolaus Schultz, Aphrothiti J Hanrahan, Irina Ostrovnaya, Arjun V Balar, Philip H Kim, Oscar Lin, Nils Weinhold, Chris Sander,[...]. J Clin Oncol 2013
192
9

Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens.
Haoyang Cai, Nitin Kumar, Homayoun C Bagheri, Christian von Mering, Mark D Robinson, Michael Baudis. BMC Genomics 2014
71
9

Catastrophic nuclear envelope collapse in cancer cell micronuclei.
Emily M Hatch, Andrew H Fischer, Thomas J Deerinck, Martin W Hetzer. Cell 2013
337
9

Chromosome catastrophes involve replication mechanisms generating complex genomic rearrangements.
Pengfei Liu, Ayelet Erez, Sandesh C Sreenath Nagamani, Shweta U Dhar, Katarzyna E Kołodziejska, Avinash V Dharmadhikari, M Lance Cooper, Joanna Wiszniewska, Feng Zhang, Marjorie A Withers,[...]. Cell 2011
286
9


Characterization of uterine leiomyomas by whole-genome sequencing.
Miika Mehine, Eevi Kaasinen, Netta Mäkinen, Riku Katainen, Kati Kämpjärvi, Esa Pitkänen, Hanna-Riikka Heinonen, Ralf Bützow, Outi Kilpivaara, Anna Kuosmanen,[...]. N Engl J Med 2013
191
9

Chromothripsis: breakage-fusion-bridge over and over again.
Carlos Oscar Sánchez Sorzano, Alberto Pascual-Montano, Ainhoa Sánchez de Diego, Carlos Martínez-A, Karel H M van Wely. Cell Cycle 2013
29
20

Chromosome-breakage genomic instability and chromothripsis in breast cancer.
Ewa Przybytkowski, Elizabeth Lenkiewicz, Michael T Barrett, Kathleen Klein, Sheida Nabavi, Celia M T Greenwood, Mark Basik. BMC Genomics 2014
34
17

Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis.
Katia Nones, Nicola Waddell, Nicci Wayte, Ann-Marie Patch, Peter Bailey, Felicity Newell, Oliver Holmes, J Lynn Fink, Michael C J Quinn, Yue Hang Tang,[...]. Nat Commun 2014
152
9

Spatial and temporal diversity in genomic instability processes defines lung cancer evolution.
Elza C de Bruin, Nicholas McGranahan, Richard Mitter, Max Salm, David C Wedge, Lucy Yates, Mariam Jamal-Hanjani, Seema Shafi, Nirupa Murugaesu, Andrew J Rowan,[...]. Science 2014
683
9

A cell-based model system links chromothripsis with hyperploidy.
Balca R Mardin, Alexandros P Drainas, Sebastian M Waszak, Joachim Weischenfeldt, Mayumi Isokane, Adrian M Stütz, Benjamin Raeder, Theocharis Efthymiopoulos, Christopher Buccitelli, Maia Segura-Wang,[...]. Mol Syst Biol 2015
79
9


Intratumor heterogeneity and branched evolution revealed by multiregion sequencing.
Marco Gerlinger, Andrew J Rowan, Stuart Horswell, M Math, James Larkin, David Endesfelder, Eva Gronroos, Pierre Martinez, Nicholas Matthews, Aengus Stewart,[...]. N Engl J Med 2012
8

Identification, molecular characterization, clinical prognosis, and therapeutic targeting of human bladder tumor-initiating cells.
Keith Syson Chan, Inigo Espinosa, Mark Chao, David Wong, Laurie Ailles, Max Diehn, Harcharan Gill, Joseph Presti, Howard Y Chang, Matt van de Rijn,[...]. Proc Natl Acad Sci U S A 2009
432
8

Inactivation of p53 and Pten promotes invasive bladder cancer.
Anna M Puzio-Kuter, Mireia Castillo-Martin, Carolyn W Kinkade, Xi Wang, Tian Huai Shen, Tulio Matos, Michael M Shen, Carlos Cordon-Cardo, Cory Abate-Shen. Genes Dev 2009
224
8

Combined gene expression and genomic profiling define two intrinsic molecular subtypes of urothelial carcinoma and gene signatures for molecular grading and outcome.
David Lindgren, Attila Frigyesi, Sigurdur Gudjonsson, Gottfrid Sjödahl, Christer Hallden, Gunilla Chebil, Srinivas Veerla, Tobias Ryden, Wiking Månsson, Fredrik Liedberg,[...]. Cancer Res 2010
201
8

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
8

The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.
Ethan Cerami, Jianjiong Gao, Ugur Dogrusoz, Benjamin E Gross, Selcuk Onur Sumer, Bülent Arman Aksoy, Anders Jacobsen, Caitlin J Byrne, Michael L Heuer, Erik Larsson,[...]. Cancer Discov 2012
8

Chromothripsis in congenital disorders and cancer: similarities and differences.
Wigard P Kloosterman, Edwin Cuppen. Curr Opin Cell Biol 2013
64
8

Subgroup-specific structural variation across 1,000 medulloblastoma genomes.
Paul A Northcott, David J H Shih, John Peacock, Livia Garzia, A Sorana Morrissy, Thomas Zichner, Adrian M Stütz, Andrey Korshunov, Jüri Reimand, Steven E Schumacher,[...]. Nature 2012
542
8

Signatures of mutational processes in human cancer.
Ludmil B Alexandrov, Serena Nik-Zainal, David C Wedge, Samuel A J R Aparicio, Sam Behjati, Andrew V Biankin, Graham R Bignell, Niccolò Bolli, Ake Borg, Anne-Lise Børresen-Dale,[...]. Nature 2013
8

Mutational processes molding the genomes of 21 breast cancers.
Serena Nik-Zainal, Ludmil B Alexandrov, David C Wedge, Peter Van Loo, Christopher D Greenman, Keiran Raine, David Jones, Jonathan Hinton, John Marshall, Lucy A Stebbings,[...]. Cell 2012
8

Complex reorganization and predominant non-homologous repair following chromosomal breakage in karyotypically balanced germline rearrangements and transgenic integration.
Colby Chiang, Jessie C Jacobsen, Carl Ernst, Carrie Hanscom, Adrian Heilbut, Ian Blumenthal, Ryan E Mills, Andrew Kirby, Amelia M Lindgren, Skye R Rudiger,[...]. Nat Genet 2012
170
8

Constitutional chromothripsis rearrangements involve clustered double-stranded DNA breaks and nonhomologous repair mechanisms.
Wigard P Kloosterman, Masoumeh Tavakoli-Yaraki, Markus J van Roosmalen, Ellen van Binsbergen, Ivo Renkens, Karen Duran, Lucia Ballarati, Sarah Vergult, Daniela Giardino, Kerstin Hansson,[...]. Cell Rep 2012
154
8

Cancer genome landscapes.
Bert Vogelstein, Nickolas Papadopoulos, Victor E Velculescu, Shibin Zhou, Luis A Diaz, Kenneth W Kinzler. Science 2013
8

Comprehensive Transcriptional Analysis of Early-Stage Urothelial Carcinoma.
Jakob Hedegaard, Philippe Lamy, Iver Nordentoft, Ferran Algaba, Søren Høyer, Benedicte Parm Ulhøi, Søren Vang, Thomas Reinert, Gregers G Hermann, Karin Mogensen,[...]. Cancer Cell 2016
288
8

Atezolizumab in patients with locally advanced and metastatic urothelial carcinoma who have progressed following treatment with platinum-based chemotherapy: a single-arm, multicentre, phase 2 trial.
Jonathan E Rosenberg, Jean Hoffman-Censits, Tom Powles, Michiel S van der Heijden, Arjun V Balar, Andrea Necchi, Nancy Dawson, Peter H O'Donnell, Ani Balmanoukian, Yohann Loriot,[...]. Lancet 2016
8

Genomic architecture and evolution of clear cell renal cell carcinomas defined by multiregion sequencing.
Marco Gerlinger, Stuart Horswell, James Larkin, Andrew J Rowan, Max P Salm, Ignacio Varela, Rosalie Fisher, Nicholas McGranahan, Nicholas Matthews, Claudio R Santos,[...]. Nat Genet 2014
790
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.