A citation-based method for searching scientific literature

Sujay Ray, Jigar N Bandaria, Mohammad H Qureshi, Ahmet Yildiz, Hamza Balci. Proc Natl Acad Sci U S A 2014
Times Cited: 80







List of co-cited articles
1098 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
37

POT1-TPP1 regulates telomeric overhang structural dynamics.
Helen Hwang, Noah Buncher, Patricia L Opresko, Sua Myong. Structure 2012
79
27

Crystal structure of parallel quadruplexes from human telomeric DNA.
Gary N Parkinson, Michael P H Lee, Stephen Neidle. Nature 2002
27

Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution.
Attila Ambrus, Ding Chen, Jixun Dai, Tiffanie Bialis, Roger A Jones, Danzhou Yang. Nucleic Acids Res 2006
753
25

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
25


DNA secondary structures: stability and function of G-quadruplex structures.
Matthew L Bochman, Katrin Paeschke, Virginia A Zakian. Nat Rev Genet 2012
716
23

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
22

Human POT1 disrupts telomeric G-quadruplexes allowing telomerase extension in vitro.
Arthur J Zaug, Elaine R Podell, Thomas R Cech. Proc Natl Acad Sci U S A 2005
267
22

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?
Shankar Balasubramanian, Laurence H Hurley, Stephen Neidle. Nat Rev Drug Discov 2011
986
20

G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
807
20

Small-molecule-induced DNA damage identifies alternative DNA structures in human genes.
Raphaël Rodriguez, Kyle M Miller, Josep V Forment, Charles R Bradshaw, Mehran Nikan, Sébastien Britton, Tobias Oelschlaegel, Blerta Xhemalce, Shankar Balasubramanian, Stephen P Jackson. Nat Chem Biol 2012
392
18

Inhibition of telomerase by G-quartet DNA structures.
A M Zahler, J R Williamson, T R Cech, D M Prescott. Nature 1991
870
18

Stability and kinetics of G-quadruplex structures.
Andrew N Lane, J Brad Chaires, Robert D Gray, John O Trent. Nucleic Acids Res 2008
441
18

The POT1-TPP1 telomere complex is a telomerase processivity factor.
Feng Wang, Elaine R Podell, Arthur J Zaug, Yuting Yang, Paul Baciu, Thomas R Cech, Ming Lei. Nature 2007
461
17


Highly prevalent putative quadruplex sequence motifs in human DNA.
Alan K Todd, Matthew Johnston, Stephen Neidle. Nucleic Acids Res 2005
660
17

Detection of G-quadruplex DNA in mammalian cells.
Alexander Henderson, Yuliang Wu, Yu Chuan Huang, Elizabeth A Chavez, Jesse Platt, F Brad Johnson, Robert M Brosh, Dipankar Sen, Peter M Lansdorp. Nucleic Acids Res 2014
275
17

Monovalent cation-induced structure of telomeric DNA: the G-quartet model.
J R Williamson, M K Raghuraman, T R Cech. Cell 1989
948
17

Quadruplex DNA: sequence, topology and structure.
Sarah Burge, Gary N Parkinson, Pascale Hazel, Alan K Todd, Stephen Neidle. Nucleic Acids Res 2006
17


High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
512
17



Telomeric overhang length determines structural dynamics and accessibility to telomerase and ALT-associated proteins.
Helen Hwang, Alex Kreig, Jacob Calvert, Justin Lormand, Yongho Kwon, James M Daley, Patrick Sung, Patricia L Opresko, Sua Myong. Structure 2014
35
37

RPA-mediated unfolding of systematically varying G-quadruplex structures.
Sujay Ray, Mohammad H Qureshi, Dominic W Malcolm, Jagat B Budhathoki, Uğur Celik, Hamza Balci. Biophys J 2013
37
35

Extreme conformational diversity in human telomeric DNA.
J Y Lee, Burak Okumus, D S Kim, Taekjip Ha. Proc Natl Acad Sci U S A 2005
188
16

Pif1 family helicases suppress genome instability at G-quadruplex motifs.
Katrin Paeschke, Matthew L Bochman, P Daniela Garcia, Petr Cejka, Katherine L Friedman, Stephen C Kowalczykowski, Virginia A Zakian. Nature 2013
279
16

Structure of the human telomere in K+ solution: a stable basket-type G-quadruplex with only two G-tetrad layers.
Kah Wai Lim, Samir Amrane, Serge Bouaziz, Weixin Xu, Yuguang Mu, Dinshaw J Patel, Kim Ngoc Luu, Anh Tuân Phan. J Am Chem Soc 2009
318
16

TPP1 is a homologue of ciliate TEBP-beta and interacts with POT1 to recruit telomerase.
Huawei Xin, Dan Liu, Ma Wan, Amin Safari, Hyeung Kim, Wen Sun, Matthew S O'Connor, Zhou Songyang. Nature 2007
357
15

Studies on the structure and dynamics of the human telomeric G quadruplex by single-molecule fluorescence resonance energy transfer.
Liming Ying, Jeremy J Green, Haitao Li, David Klenerman, Shankar Balasubramanian. Proc Natl Acad Sci U S A 2003
229
15

Super-resolution fluorescence imaging of telomeres reveals TRF2-dependent T-loop formation.
Ylli Doksani, John Y Wu, Titia de Lange, Xiaowei Zhuang. Cell 2013
265
15

Structure of the human telomere in Na+ solution: an antiparallel (2+2) G-quadruplex scaffold reveals additional diversity.
Kah Wai Lim, Veronica Chinn Min Ng, Nerea Martín-Pintado, Brahim Heddi, Anh Tuân Phan. Nucleic Acids Res 2013
86
15

Helix formation by guanylic acid.
M GELLERT, M N LIPSETT, D R DAVIES. Proc Natl Acad Sci U S A 1962
989
15

Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution.
Anh Tuân Phan, Vitaly Kuryavyi, Kim Ngoc Luu, Dinshaw J Patel. Nucleic Acids Res 2007
345
15

Mammalian telomeres resemble fragile sites and require TRF1 for efficient replication.
Agnel Sfeir, Settapong T Kosiyatrakul, Dirk Hockemeyer, Sheila L MacRae, Jan Karlseder, Carl L Schildkraut, Titia de Lange. Cell 2009
640
15

Mammalian telomeres end in a large duplex loop.
J D Griffith, L Comeau, S Rosenfield, R M Stansel, A Bianchi, H Moss, T de Lange. Cell 1999
15

Structure and function of telomeres.
E H Blackburn. Nature 1991
13

How shelterin protects mammalian telomeres.
Wilhelm Palm, Titia de Lange. Annu Rev Genet 2008
13


Structure of human telomeric DNA in crowded solution.
Brahim Heddi, Anh Tuân Phan. J Am Chem Soc 2011
209
13

Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells.
Giulia Biffi, Marco Di Antonio, David Tannahill, Shankar Balasubramanian. Nat Chem 2014
323
13


Replication protein A unfolds G-quadruplex structures with varying degrees of efficiency.
Mohammad H Qureshi, Sujay Ray, Abby L Sewell, Soumitra Basu, Hamza Balci. J Phys Chem B 2012
39
28

Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold.
Kim Ngoc Luu, Anh Tuân Phan, Vitaly Kuryavyi, Laurent Lacroix, Dinshaw J Patel. J Am Chem Soc 2006
571
13


Hydration is a major determinant of the G-quadruplex stability and conformation of the human telomere 3' sequence of d(AG3(TTAG3)3).
M Clarke Miller, Robert Buscaglia, Jonathan B Chaires, Andrew N Lane, John O Trent. J Am Chem Soc 2010
149
13

RecQ-core of BLM unfolds telomeric G-quadruplex in the absence of ATP.
Jagat B Budhathoki, Sujay Ray, Vaclav Urban, Pavel Janscak, Jaya G Yodh, Hamza Balci. Nucleic Acids Res 2014
37
29

G-quadruplex conformation and dynamics are determined by loop length and sequence.
Ramreddy Tippana, Weikun Xiao, Sua Myong. Nucleic Acids Res 2014
86
13

Normal human chromosomes have long G-rich telomeric overhangs at one end.
W E Wright, V M Tesmer, K E Huffman, S D Levene, J W Shay. Genes Dev 1997
524
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.