A citation-based method for searching scientific literature

Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton, Michael A McAlear, Peter B Moore, Harry F Noller, Joaquin Ortega, Vikram Govind Panse, V Ramakrishnan, Christian M T Spahn, Thomas A Steitz, Marek Tchorzewski, David Tollervey, Alan J Warren, James R Williamson, Daniel Wilson, Ada Yonath, Marat Yusupov. Curr Opin Struct Biol 2014
Times Cited: 339







List of co-cited articles
872 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
742
12

Eukaryotic Ribosome Assembly.
Jochen Baßler, Ed Hurt. Annu Rev Biochem 2019
119
11

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
11

Ribosome assembly coming into focus.
Sebastian Klinge, John L Woolford. Nat Rev Mol Cell Biol 2019
163
10

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
N Ban, P Nissen, J Hansen, P B Moore, T A Steitz. Science 2000
10

Ribosome. The structure of the human mitochondrial ribosome.
Alexey Amunts, Alan Brown, Jaan Toots, Sjors H W Scheres, V Ramakrishnan. Science 2015
289
10

Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale.
Odile Lecompte, Raymond Ripp, Jean-Claude Thierry, Dino Moras, Olivier Poch. Nucleic Acids Res 2002
231
10

Ribosomopathies: There's strength in numbers.
Eric W Mills, Rachel Green. Science 2017
191
9

Heterogeneous Ribosomes Preferentially Translate Distinct Subpools of mRNAs Genome-wide.
Zhen Shi, Kotaro Fujii, Kyle M Kovary, Naomi R Genuth, Hannes L Röst, Mary N Teruel, Maria Barna. Mol Cell 2017
274
9


One core, two shells: bacterial and eukaryotic ribosomes.
Sergey Melnikov, Adam Ben-Shem, Nicolas Garreau de Loubresse, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Nat Struct Mol Biol 2012
235
9

Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo.
Jesus de la Cruz, Katrin Karbstein, John L Woolford. Annu Rev Biochem 2015
191
9

The economics of ribosome biosynthesis in yeast.
J R Warner. Trends Biochem Sci 1999
9

Phylogenomics of prokaryotic ribosomal proteins.
Natalya Yutin, Pere Puigbò, Eugene V Koonin, Yuri I Wolf. PLoS One 2012
162
9

Promiscuous behaviour of archaeal ribosomal proteins: implications for eukaryotic ribosome evolution.
Jean-Paul Armache, Andreas M Anger, Viter Márquez, Sibylle Franckenberg, Thomas Fröhlich, Elizabeth Villa, Otto Berninghausen, Michael Thomm, Georg J Arnold, Roland Beckmann,[...]. Nucleic Acids Res 2013
45
20

Ribosomopathies: human disorders of ribosome dysfunction.
Anupama Narla, Benjamin L Ebert. Blood 2010
508
8

Revising the Structural Diversity of Ribosomal Proteins Across the Three Domains of Life.
Sergey Melnikov, Kasidet Manakongtreecheep, Dieter Söll. Mol Biol Evol 2018
35
22

Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome.
Basil J Greber, Philipp Bieri, Marc Leibundgut, Alexander Leitner, Ruedi Aebersold, Daniel Boehringer, Nenad Ban. Science 2015
250
8

How common are extraribosomal functions of ribosomal proteins?
Jonathan R Warner, Kerri B McIntosh. Mol Cell 2009
461
8

New tools for automated high-resolution cryo-EM structure determination in RELION-3.
Jasenko Zivanov, Takanori Nakane, Björn O Forsberg, Dari Kimanius, Wim Jh Hagen, Erik Lindahl, Sjors Hw Scheres. Elife 2018
8

UCSF ChimeraX: Meeting modern challenges in visualization and analysis.
Thomas D Goddard, Conrad C Huang, Elaine C Meng, Eric F Pettersen, Gregory S Couch, John H Morris, Thomas E Ferrin. Protein Sci 2018
8

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy.
Shawn Q Zheng, Eugene Palovcak, Jean-Paul Armache, Kliment A Verba, Yifan Cheng, David A Agard. Nat Methods 2017
8

History of the ribosome and the origin of translation.
Anton S Petrov, Burak Gulen, Ashlyn M Norris, Nicholas A Kovacs, Chad R Bernier, Kathryn A Lanier, George E Fox, Stephen C Harvey, Roger M Wartell, Nicholas V Hud,[...]. Proc Natl Acad Sci U S A 2015
115
8

Ribosome biogenesis in the yeast Saccharomyces cerevisiae.
John L Woolford, Susan J Baserga. Genetics 2013
447
8

Root of the Tree: The Significance, Evolution, and Origins of the Ribosome.
Jessica C Bowman, Anton S Petrov, Moran Frenkel-Pinter, Petar I Penev, Loren Dean Williams. Chem Rev 2020
39
20

The gene encoding ribosomal protein S19 is mutated in Diamond-Blackfan anaemia.
N Draptchinskaia, P Gustavsson, B Andersson, M Pettersson, T N Willig, I Dianzani, S Ball, G Tchernia, J Klar, H Matsson,[...]. Nat Genet 1999
610
7

The Mammalian Ribo-interactome Reveals Ribosome Functional Diversity and Heterogeneity.
Deniz Simsek, Gerald C Tiu, Ryan A Flynn, Gun W Byeon, Kathrin Leppek, Adele F Xu, Howard Y Chang, Maria Barna. Cell 2017
188
7


Ribosome Levels Selectively Regulate Translation and Lineage Commitment in Human Hematopoiesis.
Rajiv K Khajuria, Mathias Munschauer, Jacob C Ulirsch, Claudia Fiorini, Leif S Ludwig, Sean K McFarland, Nour J Abdulhay, Harrison Specht, Hasmik Keshishian, D R Mani,[...]. Cell 2018
161
7

Structures of the human and Drosophila 80S ribosome.
Andreas M Anger, Jean-Paul Armache, Otto Berninghausen, Michael Habeck, Marion Subklewe, Daniel N Wilson, Roland Beckmann. Nature 2013
332
7

Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome.
Jean-Paul Armache, Alexander Jarasch, Andreas M Anger, Elizabeth Villa, Thomas Becker, Shashi Bhushan, Fabrice Jossinet, Michael Habeck, Gülcin Dindar, Sibylle Franckenberg,[...]. Proc Natl Acad Sci U S A 2010
110
7

Structure of the 30S ribosomal subunit.
B T Wimberly, D E Brodersen, W M Clemons, R J Morgan-Warren, A P Carter, C Vonrhein, T Hartsch, V Ramakrishnan. Nature 2000
7

Structure and Function of the Mitochondrial Ribosome.
Basil J Greber, Nenad Ban. Annu Rev Biochem 2016
126
6

How Ribosomes Translate Cancer.
Sergey O Sulima, Isabel J F Hofman, Kim De Keersmaecker, Jonathan D Dinman. Cancer Discov 2017
84
7

The structural basis of ribosome activity in peptide bond synthesis.
P Nissen, J Hansen, N Ban, P B Moore, T A Steitz. Science 2000
6

Ribosomal proteins: functions beyond the ribosome.
Xiang Zhou, Wen-Juan Liao, Jun-Ming Liao, Peng Liao, Hua Lu. J Mol Cell Biol 2015
307
6


Translation: The Universal Structural Core of Life.
Chad R Bernier, Anton S Petrov, Nicholas A Kovacs, Petar I Penev, Loren Dean Williams. Mol Biol Evol 2018
26
23

Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function.
Katherine E Sloan, Ahmed S Warda, Sunny Sharma, Karl-Dieter Entian, Denis L J Lafontaine, Markus T Bohnsack. RNA Biol 2017
253
6

Features and development of Coot.
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
6


Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection.
Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori. Mol Syst Biol 2006
6

Structural Patching Fosters Divergence of Mitochondrial Ribosomes.
Anton S Petrov, Elizabeth C Wood, Chad R Bernier, Ashlyn M Norris, Alan Brown, Alexey Amunts. Mol Biol Evol 2019
31
19

Hallmarks of ribosomopathies.
Kim R Kampen, Sergey O Sulima, Stijn Vereecke, Kim De Keersmaecker. Nucleic Acids Res 2020
44
13

Predicting the minimal translation apparatus: lessons from the reductive evolution of mollicutes.
Henri Grosjean, Marc Breton, Pascal Sirand-Pugnet, Florence Tardy, François Thiaucourt, Christine Citti, Aurélien Barré, Satoko Yoshizawa, Dominique Fourmy, Valérie de Crécy-Lagard,[...]. PLoS Genet 2014
64
9

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.
Eva Kummer, Marc Leibundgut, Oliver Rackham, Richard G Lee, Daniel Boehringer, Aleksandra Filipovska, Nenad Ban. Nature 2018
58
10

Deletion of ribosomal protein genes is a common vulnerability in human cancer, especially in concert with TP53 mutations.
Ram Ajore, David Raiser, Marie McConkey, Magnus Jöud, Bernd Boidol, Brenton Mar, Gordon Saksena, David M Weinstock, Scott Armstrong, Steven R Ellis,[...]. EMBO Mol Med 2017
58
8

The ribosomal protein gene RPL5 is a haploinsufficient tumor suppressor in multiple cancer types.
Laura Fancello, Kim R Kampen, Isabel J F Hofman, Jelle Verbeeck, Kim De Keersmaecker. Oncotarget 2017
53
9

Mutual protection of ribosomal proteins L5 and L11 from degradation is essential for p53 activation upon ribosomal biogenesis stress.
Sladana Bursać, Maja Cokarić Brdovčak, Martin Pfannkuchen, Ines Orsolić, Lior Golomb, Yan Zhu, Chen Katz, Lilyn Daftuar, Kristina Grabušić, Iva Vukelić,[...]. Proc Natl Acad Sci U S A 2012
133
5

Ribosomal protein L5 and L11 mutations are associated with cleft palate and abnormal thumbs in Diamond-Blackfan anemia patients.
Hanna T Gazda, Mee Rie Sheen, Adrianna Vlachos, Valerie Choesmel, Marie-Françoise O'Donohue, Hal Schneider, Natasha Darras, Catherine Hasman, Colin A Sieff, Peter E Newburger,[...]. Am J Hum Genet 2008
290
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.