A citation-based method for searching scientific literature

Stephen M Plaza, Louis K Scheffer, Dmitri B Chklovskii. Curr Opin Neurobiol 2014
Times Cited: 40







List of co-cited articles
218 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The structure of the nervous system of the nematode Caenorhabditis elegans.
J G White, E Southgate, J N Thomson, S Brenner. Philos Trans R Soc Lond B Biol Sci 1986
32

A visual motion detection circuit suggested by Drosophila connectomics.
Shin-ya Takemura, Arjun Bharioke, Zhiyuan Lu, Aljoscha Nern, Shiv Vitaladevuni, Patricia K Rivlin, William T Katz, Donald J Olbris, Stephen M Plaza, Philip Winston,[...]. Nature 2013
374
32

Saturated Reconstruction of a Volume of Neocortex.
Narayanan Kasthuri, Kenneth Jeffrey Hayworth, Daniel Raimund Berger, Richard Lee Schalek, José Angel Conchello, Seymour Knowles-Barley, Dongil Lee, Amelio Vázquez-Reina, Verena Kaynig, Thouis Raymond Jones,[...]. Cell 2015
476
27

Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling.
Graham Knott, Herschel Marchman, David Wall, Ben Lich. J Neurosci 2008
393
25

Network anatomy and in vivo physiology of visual cortical neurons.
Davi D Bock, Wei-Chung Allen Lee, Aaron M Kerlin, Mark L Andermann, Greg Hood, Arthur W Wetzel, Sergey Yurgenson, Edward R Soucy, Hyon Suk Kim, R Clay Reid. Nature 2011
512
25


Connectomic reconstruction of the inner plexiform layer in the mouse retina.
Moritz Helmstaedter, Kevin L Briggman, Srinivas C Turaga, Viren Jain, H Sebastian Seung, Winfried Denk. Nature 2013
509
22

Structural properties of the Caenorhabditis elegans neuronal network.
Lav R Varshney, Beth L Chen, Eric Paniagua, David H Hall, Dmitri B Chklovskii. PLoS Comput Biol 2011
369
20

The human connectome: A structural description of the human brain.
Olaf Sporns, Giulio Tononi, Rolf Kötter. PLoS Comput Biol 2005
20

From the connectome to brain function.
Cornelia I Bargmann, Eve Marder. Nat Methods 2013
283
20

Ultrastructurally smooth thick partitioning and volume stitching for large-scale connectomics.
Kenneth J Hayworth, C Shan Xu, Zhiyuan Lu, Graham W Knott, Richard D Fetter, Juan Carlos Tapia, Jeff W Lichtman, Harald F Hess. Nat Methods 2015
60
20


Ome sweet ome: what can the genome tell us about the connectome?
Jeff W Lichtman, Joshua R Sanes. Curr Opin Neurobiol 2008
119
17

Three-dimensional reconstruction of brain-wide wiring networks in Drosophila at single-cell resolution.
Ann-Shyn Chiang, Chih-Yung Lin, Chao-Chun Chuang, Hsiu-Ming Chang, Chang-Huain Hsieh, Chang-Wei Yeh, Chi-Tin Shih, Jian-Jheng Wu, Guo-Tzau Wang, Yung-Chang Chen,[...]. Curr Biol 2011
375
17

Wiring specificity in the direction-selectivity circuit of the retina.
Kevin L Briggman, Moritz Helmstaedter, Winfried Denk. Nature 2011
510
17

High-resolution, high-throughput imaging with a multibeam scanning electron microscope.
A L Eberle, S Mikula, R Schalek, J Lichtman, M L Knothe Tate, D Zeidler. J Microsc 2015
86
17

Synaptic circuits and their variations within different columns in the visual system of Drosophila.
Shin-ya Takemura, C Shan Xu, Zhiyuan Lu, Patricia K Rivlin, Toufiq Parag, Donald J Olbris, Stephen Plaza, Ting Zhao, William T Katz, Lowell Umayam,[...]. Proc Natl Acad Sci U S A 2015
119
17

Why not connectomics?
Joshua L Morgan, Jeff W Lichtman. Nat Methods 2013
73
17

A mesoscale connectome of the mouse brain.
Seung Wook Oh, Julie A Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M Henry,[...]. Nature 2014
15

Space-time wiring specificity supports direction selectivity in the retina.
Jinseop S Kim, Matthew J Greene, Aleksandar Zlateski, Kisuk Lee, Mark Richardson, Srinivas C Turaga, Michael Purcaro, Matthew Balkam, Amy Robinson, Bardia F Behabadi,[...]. Nature 2014
252
12

Volume electron microscopy for neuronal circuit reconstruction.
Kevin L Briggman, Davi D Bock. Curr Opin Neurobiol 2012
186
12

Computational methods and challenges for large-scale circuit mapping.
Moritz Helmstaedter, Partha P Mitra. Curr Opin Neurobiol 2012
49
12

High-accuracy neurite reconstruction for high-throughput neuroanatomy.
Moritz Helmstaedter, Kevin L Briggman, Winfried Denk. Nat Neurosci 2011
160
12

Ultrastructural analysis of hippocampal neuropil from the connectomics perspective.
Yuriy Mishchenko, Tao Hu, Josef Spacek, John Mendenhall, Kristen M Harris, Dmitri B Chklovskii. Neuron 2010
183
12

The big data challenges of connectomics.
Jeff W Lichtman, Hanspeter Pfister, Nir Shavit. Nat Neurosci 2014
78
12

A GAL4-driver line resource for Drosophila neurobiology.
Arnim Jenett, Gerald M Rubin, Teri-T B Ngo, David Shepherd, Christine Murphy, Heather Dionne, Barret D Pfeiffer, Amanda Cavallaro, Donald Hall, Jennifer Jeter,[...]. Cell Rep 2012
802
12

Synaptic circuits of the Drosophila optic lobe: the input terminals to the medulla.
Shin-Ya Takemura, Zhiyuan Lu, Ian A Meinertzhagen. J Comp Neurol 2008
141
12

Semi-automated reconstruction of neural circuits using electron microscopy.
Dmitri B Chklovskii, Shiv Vitaladevuni, Louis K Scheffer. Curr Opin Neurobiol 2010
107
12

The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamus.
Josh Lyskowski Morgan, Daniel Raimund Berger, Arthur Willis Wetzel, Jeff William Lichtman. Cell 2016
125
12

Enhanced FIB-SEM systems for large-volume 3D imaging.
C Shan Xu, Kenneth J Hayworth, Zhiyuan Lu, Patricia Grob, Ahmed M Hassan, José G García-Cerdán, Krishna K Niyogi, Eva Nogales, Richard J Weinberg, Harald F Hess. Elife 2017
144
12


Structural and molecular interrogation of intact biological systems.
Kwanghun Chung, Jenelle Wallace, Sung-Yon Kim, Sandhiya Kalyanasundaram, Aaron S Andalman, Thomas J Davidson, Julie J Mirzabekov, Kelly A Zalocusky, Joanna Mattis, Aleksandra K Denisin,[...]. Nature 2013
10

Structural neurobiology: missing link to a mechanistic understanding of neural computation.
Winfried Denk, Kevin L Briggman, Moritz Helmstaedter. Nat Rev Neurosci 2012
122
10

Imaging ATUM ultrathin section libraries with WaferMapper: a multi-scale approach to EM reconstruction of neural circuits.
Kenneth J Hayworth, Josh L Morgan, Richard Schalek, Daniel R Berger, David G C Hildebrand, Jeff W Lichtman. Front Neural Circuits 2014
123
10


Network motifs: simple building blocks of complex networks.
R Milo, S Shen-Orr, S Itzkovitz, N Kashtan, D Chklovskii, U Alon. Science 2002
10

CATMAID: collaborative annotation toolkit for massive amounts of image data.
Stephan Saalfeld, Albert Cardona, Volker Hartenstein, Pavel Tomancak. Bioinformatics 2009
169
10

Quantitative neuroanatomy for connectomics in Drosophila.
Casey M Schneider-Mizell, Stephan Gerhard, Mark Longair, Tom Kazimiers, Feng Li, Maarten F Zwart, Andrew Champion, Frank M Midgley, Richard D Fetter, Stephan Saalfeld,[...]. Elife 2016
147
10

Anatomy and function of an excitatory network in the visual cortex.
Wei-Chung Allen Lee, Vincent Bonin, Michael Reed, Brett J Graham, Greg Hood, Katie Glattfelder, R Clay Reid. Nature 2016
224
10

Collective dynamics of 'small-world' networks.
D J Watts, S H Strogatz. Nature 1998
10

Exploring the third dimension: volume electron microscopy comes of age.
Christopher J Peddie, Lucy M Collinson. Micron 2014
178
7

Learning context cues for synapse segmentation.
Carlos Becker, Karim Ali, Graham Knott, Pascal Fua. IEEE Trans Med Imaging 2013
25
12

Large-scale automatic reconstruction of neuronal processes from electron microscopy images.
Verena Kaynig, Amelio Vazquez-Reina, Seymour Knowles-Barley, Mike Roberts, Thouis R Jones, Narayanan Kasthuri, Eric Miller, Jeff Lichtman, Hanspeter Pfister. Med Image Anal 2015
43
7

High-contrast en bloc staining of neuronal tissue for field emission scanning electron microscopy.
Juan Carlos Tapia, Narayanan Kasthuri, Kenneth J Hayworth, Richard Schalek, Jeff W Lichtman, Stephen J Smith, JoAnn Buchanan. Nat Protoc 2012
153
7

Highly nonrandom features of synaptic connectivity in local cortical circuits.
Sen Song, Per Jesper Sjöström, Markus Reigl, Sacha Nelson, Dmitri B Chklovskii. PLoS Biol 2005
851
7


Design and Evaluation of Interactive Proofreading Tools for Connectomics.
Daniel Haehn, Seymour Knowles-Barley, Mike Roberts, Johanna Beyer, Narayanan Kasthuri, Jeff W Lichtman, Hanspeter Pfister. IEEE Trans Vis Comput Graph 2014
18
16


Refined spatial manipulation of neuronal function by combinatorial restriction of transgene expression.
Haojiang Luan, Nathan C Peabody, Charles R Vinson, Benjamin H White. Neuron 2006
271
7



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.