A citation-based method for searching scientific literature

Barbara Treutlein, Ozgun Gokce, Stephen R Quake, Thomas C Südhof. Proc Natl Acad Sci U S A 2014
Times Cited: 155







List of co-cited articles
954 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Targeted combinatorial alternative splicing generates brain region-specific repertoires of neurexins.
Dietmar Schreiner, Thi-Minh Nguyen, Giancarlo Russo, Steffen Heber, Andrea Patrignani, Erik Ahrné, Peter Scheiffele. Neuron 2014
103
46


Trans-synaptic interaction of GluRdelta2 and Neurexin through Cbln1 mediates synapse formation in the cerebellum.
Takeshi Uemura, Sung-Jin Lee, Misato Yasumura, Tomonori Takeuchi, Tomoyuki Yoshida, Moonjin Ra, Ryo Taguchi, Kenji Sakimura, Masayoshi Mishina. Cell 2010
308
29

Presynaptic neurexin-3 alternative splicing trans-synaptically controls postsynaptic AMPA receptor trafficking.
Jason Aoto, David C Martinelli, Robert C Malenka, Katsuhiko Tabuchi, Thomas C Südhof. Cell 2013
172
27

Alpha-neurexins couple Ca2+ channels to synaptic vesicle exocytosis.
Markus Missler, Weiqi Zhang, Astrid Rohlmann, Gunnar Kattenstroth, Robert E Hammer, Kurt Gottmann, Thomas C Südhof. Nature 2003
445
26


A splice code for trans-synaptic cell adhesion mediated by binding of neuroligin 1 to alpha- and beta-neurexins.
Antony A Boucard, Alexander A Chubykin, Davide Comoletti, Palmer Taylor, Thomas C Südhof. Neuron 2005
331
23

LRRTM2 functions as a neurexin ligand in promoting excitatory synapse formation.
Jaewon Ko, Marc V Fuccillo, Robert C Malenka, Thomas C Südhof. Neuron 2009
244
23

β-Neurexins Control Neural Circuits by Regulating Synaptic Endocannabinoid Signaling.
Garret R Anderson, Jason Aoto, Katsuhiko Tabuchi, Csaba Földy, Jason Covy, Ada Xin Yee, Dick Wu, Sung-Jin Lee, Lu Chen, Robert C Malenka,[...]. Cell 2015
71
30

LRRTMs and neuroligins bind neurexins with a differential code to cooperate in glutamate synapse development.
Tabrez J Siddiqui, Raika Pancaroglu, Yunhee Kang, Amanda Rooyakkers, Ann Marie Craig. J Neurosci 2010
190
22

Single-Cell mRNA Profiling Reveals Cell-Type-Specific Expression of Neurexin Isoforms.
Marc V Fuccillo, Csaba Földy, Özgün Gökce, Patrick E Rothwell, Gordon L Sun, Robert C Malenka, Thomas C Südhof. Neuron 2015
84
26




A single-molecule long-read survey of the human transcriptome.
Donald Sharon, Hagen Tilgner, Fabian Grubert, Michael Snyder. Nat Biotechnol 2013
297
20

Neurexins: synaptic cell surface proteins related to the alpha-latrotoxin receptor and laminin.
Y A Ushkaryov, A G Petrenko, M Geppert, T C Südhof. Science 1992
526
19

Conditional Deletion of All Neurexins Defines Diversity of Essential Synaptic Organizer Functions for Neurexins.
Lulu Y Chen, Man Jiang, Bo Zhang, Ozgun Gokce, Thomas C Südhof. Neuron 2017
80
23

Mouse neurexin-1alpha deletion causes correlated electrophysiological and behavioral changes consistent with cognitive impairments.
Mark R Etherton, Cory A Blaiss, Craig M Powell, Thomas C Südhof. Proc Natl Acad Sci U S A 2009
281
18

Neurexins.
Carsten Reissner, Fabian Runkel, Markus Missler. Genome Biol 2013
101
18


LRRTM2 interacts with Neurexin1 and regulates excitatory synapse formation.
Joris de Wit, Emily Sylwestrak, Matthew L O'Sullivan, Stefanie Otto, Katie Tiglio, Jeffrey N Savas, John R Yates, Davide Comoletti, Palmer Taylor, Anirvan Ghosh. Neuron 2009
259
17


Distinct circuit-dependent functions of presynaptic neurexin-3 at GABAergic and glutamatergic synapses.
Jason Aoto, Csaba Földy, Silviana Maria Ciurea Ilcus, Katsuhiko Tabuchi, Thomas C Südhof. Nat Neurosci 2015
54
27

Control of neuronal synapse specification by a highly dedicated alternative splicing program.
Lisa Traunmüller, Andrea M Gomez, Thi-Minh Nguyen, Peter Scheiffele. Science 2016
69
21

A stoichiometric complex of neurexins and dystroglycan in brain.
S Sugita, F Saito, J Tang, J Satz, K Campbell, T C Südhof. J Cell Biol 2001
323
15

Alternative isoform regulation in human tissue transcriptomes.
Eric T Wang, Rickard Sandberg, Shujun Luo, Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F Kingsmore, Gary P Schroth, Christopher B Burge. Nature 2008
15

Characterization of the human ESC transcriptome by hybrid sequencing.
Kin Fai Au, Vittorio Sebastiano, Pegah Tootoonchi Afshar, Jens Durruthy Durruthy, Lawrence Lee, Brian A Williams, Harm van Bakel, Eric E Schadt, Renee A Reijo-Pera, Jason G Underwood,[...]. Proc Natl Acad Sci U S A 2013
172
15

Neuroligin 1: a splice site-specific ligand for beta-neurexins.
K Ichtchenko, Y Hata, T Nguyen, B Ullrich, M Missler, C Moomaw, T C Südhof. Cell 1995
521
14

SAM68 regulates neuronal activity-dependent alternative splicing of neurexin-1.
Takatoshi Iijima, Karen Wu, Harald Witte, Yoko Hanno-Iijima, Timo Glatter, Stéphane Richard, Peter Scheiffele. Cell 2011
174
14

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.
Qun Pan, Ofer Shai, Leo J Lee, Brendan J Frey, Benjamin J Blencowe. Nat Genet 2008
14

Heparan Sulfate Organizes Neuronal Synapses through Neurexin Partnerships.
Peng Zhang, Hong Lu, Rui T Peixoto, Mary K Pines, Yuan Ge, Shinichiro Oku, Tabrez J Siddiqui, Yicheng Xie, Wenlan Wu, Stephanie Archer-Hartmann,[...]. Cell 2018
63
22


Neurexins induce differentiation of GABA and glutamate postsynaptic specializations via neuroligins.
Ethan R Graf, XueZhao Zhang, Shan-Xue Jin, Michael W Linhoff, Ann Marie Craig. Cell 2004
661
13

Assessment of transcript reconstruction methods for RNA-seq.
Tamara Steijger, Josep F Abril, Pär G Engström, Felix Kokocinski, Tim J Hubbard, Roderic Guigó, Jennifer Harrow, Paul Bertone. Nat Methods 2013
339
13

An alternative splicing switch shapes neurexin repertoires in principal neurons versus interneurons in the mouse hippocampus.
Thi-Minh Nguyen, Dietmar Schreiner, Le Xiao, Lisa Traunmüller, Caroline Bornmann, Peter Scheiffele. Elife 2016
42
30

Transsynaptic Modulation of Kainate Receptor Functions by C1q-like Proteins.
Keiko Matsuda, Timotheus Budisantoso, Nikolaos Mitakidis, Yuki Sugaya, Eriko Miura, Wataru Kakegawa, Miwako Yamasaki, Kohtarou Konno, Motokazu Uchigashima, Manabu Abe,[...]. Neuron 2016
83
14


Activity-dependent validation of excitatory versus inhibitory synapses by neuroligin-1 versus neuroligin-2.
Alexander A Chubykin, Deniz Atasoy, Mark R Etherton, Nils Brose, Ege T Kavalali, Jay R Gibson, Thomas C Südhof. Neuron 2007
386
12



Structures of neuroligin-1 and the neuroligin-1/neurexin-1 beta complex reveal specific protein-protein and protein-Ca2+ interactions.
Demet Araç, Antony A Boucard, Engin Ozkan, Pavel Strop, Evan Newell, Thomas C Südhof, Axel T Brunger. Neuron 2007
140
11

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
Cole Trapnell, Brian A Williams, Geo Pertea, Ali Mortazavi, Gordon Kwan, Marijke J van Baren, Steven L Salzberg, Barbara J Wold, Lior Pachter. Nat Biotechnol 2010
11

Human Neuropsychiatric Disease Modeling using Conditional Deletion Reveals Synaptic Transmission Defects Caused by Heterozygous Mutations in NRXN1.
ChangHui Pak, Tamas Danko, Yingsha Zhang, Jason Aoto, Garret Anderson, Stephan Maxeiner, Fei Yi, Marius Wernig, Thomas C Südhof. Cell Stem Cell 2015
117
11

Quantitative isoform-profiling of highly diversified recognition molecules.
Dietmar Schreiner, Jovan Simicevic, Erik Ahrné, Alexander Schmidt, Peter Scheiffele. Elife 2015
36
30

Hybrid error correction and de novo assembly of single-molecule sequencing reads.
Sergey Koren, Michael C Schatz, Brian P Walenz, Jeffrey Martin, Jason T Howard, Ganeshkumar Ganapathy, Zhong Wang, David A Rasko, W Richard McCombie, Erich D Jarvis,[...]. Nat Biotechnol 2012
585
11

Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events.
Hagen Tilgner, Fereshteh Jahanbani, Tim Blauwkamp, Ali Moshrefi, Erich Jaeger, Feng Chen, Itamar Harel, Carlos D Bustamante, Morten Rasmussen, Michael P Snyder. Nat Biotechnol 2015
96
11

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
11

Defining a personal, allele-specific, and single-molecule long-read transcriptome.
Hagen Tilgner, Fabian Grubert, Donald Sharon, Michael P Snyder. Proc Natl Acad Sci U S A 2014
120
11

Heterozygous deletion of α-neurexin I or α-neurexin II results in behaviors relevant to autism and schizophrenia.
James Dachtler, Jose L Ivorra, Tessa E Rowland, Colin Lever, R John Rodgers, Steven J Clapcote. Behav Neurosci 2015
39
28

Altered social behaviours in neurexin 1α knockout mice resemble core symptoms in neurodevelopmental disorders.
Hannah Mary Grayton, Markus Missler, David Andrew Collier, Cathy Fernandes. PLoS One 2013
93
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.