A citation-based method for searching scientific literature

Jonathan M Davis, Veronica B Searles, Nathan Anderson, Jonathon Keeney, Laura Dumas, James M Sikela. PLoS Genet 2014
Times Cited: 32







List of co-cited articles
280 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Human lineage-specific amplification, selection, and neuronal expression of DUF1220 domains.
Magdalena C Popesco, Erik J Maclaren, Janet Hopkins, Laura Dumas, Michael Cox, Lynne Meltesen, Loris McGavran, Gerald J Wyckoff, James M Sikela. Science 2006
125
68

DUF1220-domain copy number implicated in human brain-size pathology and evolution.
Laura J Dumas, Majesta S O'Bleness, Jonathan M Davis, C Michael Dickens, Nathan Anderson, J G Keeney, Jay Jackson, Megan Sikela, Armin Raznahan, Jay Giedd,[...]. Am J Hum Genet 2012
67
68

Evolutionary history and genome organization of DUF1220 protein domains.
Majesta S O'Bleness, C Michael Dickens, Laura J Dumas, Hildegard Kehrer-Sawatzki, Gerald J Wyckoff, James M Sikela. G3 (Bethesda) 2012
46
53

DUF1220 protein domains drive proliferation in human neural stem cells and are associated with increased cortical volume in anthropoid primates.
J G Keeney, J M Davis, J Siegenthaler, M D Post, B S Nielsen, W D Hopkins, J M Sikela. Brain Struct Funct 2015
33
53

A novel gene family NBPF: intricate structure generated by gene duplications during primate evolution.
Karl Vandepoele, Nadine Van Roy, Katrien Staes, Frank Speleman, Frans van Roy. Mol Biol Evol 2005
94
50

The case for DUF1220 domain dosage as a primary contributor to anthropoid brain expansion.
Jonathon G Keeney, Laura Dumas, James M Sikela. Front Hum Neurosci 2014
25
64

DUF1220 domains, cognitive disease, and human brain evolution.
L Dumas, J M Sikela. Cold Spring Harb Symp Quant Biol 2009
42
43

Recurrent reciprocal 1q21.1 deletions and duplications associated with microcephaly or macrocephaly and developmental and behavioral abnormalities.
Nicola Brunetti-Pierri, Jonathan S Berg, Fernando Scaglia, John Belmont, Carlos A Bacino, Trilochan Sahoo, Seema R Lalani, Brett Graham, Brendan Lee, Marwan Shinawi,[...]. Nat Genet 2008
390
37

Lineage-specific gene duplication and loss in human and great ape evolution.
Andrew Fortna, Young Kim, Erik MacLaren, Kriste Marshall, Gretchen Hahn, Lynne Meltesen, Matthew Brenton, Raquel Hink, Sonya Burgers, Tina Hernandez-Boussard,[...]. PLoS Biol 2004
192
34

Recurrent rearrangements of chromosome 1q21.1 and variable pediatric phenotypes.
Heather C Mefford, Andrew J Sharp, Carl Baker, Andy Itsara, Zhaoshi Jiang, Karen Buysse, Shuwen Huang, Viv K Maloney, John A Crolla, Diana Baralle,[...]. N Engl J Med 2008
515
34

DUF1220 copy number is linearly associated with increased cognitive function as measured by total IQ and mathematical aptitude scores.
Jonathon M Davis, Veronica B Searles, Nathan Anderson, Jonathon Keeney, Armin Raznahan, L John Horwood, David M Fergusson, Martin A Kennedy, Jay Giedd, James M Sikela. Hum Genet 2015
17
64


Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication.
Megan Y Dennis, Xander Nuttle, Peter H Sudmant, Francesca Antonacci, Tina A Graves, Mikhail Nefedov, Jill A Rosenfeld, Saba Sajjadian, Maika Malig, Holland Kotkiewicz,[...]. Cell 2012
193
28

Finished sequence and assembly of the DUF1220-rich 1q21 region using a haploid human genome.
Majesta O'Bleness, Veronica B Searles, C Michael Dickens, David Astling, Derek Albracht, Angel C Y Mak, Yvonne Y Y Lai, Chin Lin, Catherine Chu, Tina Graves,[...]. BMC Genomics 2014
29
31


Evolution of genetic and genomic features unique to the human lineage.
Majesta O'Bleness, Veronica B Searles, Ajit Varki, Pascal Gagneux, James M Sikela. Nat Rev Genet 2012
81
25

Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion.
Marta Florio, Mareike Albert, Elena Taverna, Takashi Namba, Holger Brandl, Eric Lewitus, Christiane Haffner, Alex Sykes, Fong Kuan Wong, Jula Peters,[...]. Science 2015
270
25

Inhibition of SRGAP2 function by its human-specific paralogs induces neoteny during spine maturation.
Cécile Charrier, Kaumudi Joshi, Jaeda Coutinho-Budd, Ji-Eun Kim, Nelle Lambert, Jacqueline de Marchena, Wei-Lin Jin, Pierre Vanderhaeghen, Anirvan Ghosh, Takayuki Sassa,[...]. Cell 2012
212
21



Many human accelerated regions are developmental enhancers.
John A Capra, Genevieve D Erwin, Gabriel McKinsey, John L R Rubenstein, Katherine S Pollard. Philos Trans R Soc Lond B Biol Sci 2013
87
18

A fast-evolving human NPAS3 enhancer gained reporter expression in the developing forebrain of transgenic mice.
Gretel B Kamm, Rodrigo López-Leal, Juan R Lorenzo, Lucía F Franchini. Philos Trans R Soc Lond B Biol Sci 2013
23
26

The developmental brain gene NPAS3 contains the largest number of accelerated regulatory sequences in the human genome.
Gretel B Kamm, Francisco Pisciottano, Rafi Kliger, Lucía F Franchini. Mol Biol Evol 2013
46
18

An RNA gene expressed during cortical development evolved rapidly in humans.
Katherine S Pollard, Sofie R Salama, Nelle Lambert, Marie-Alexandra Lambot, Sandra Coppens, Jakob S Pedersen, Sol Katzman, Bryan King, Courtney Onodera, Adam Siepel,[...]. Nature 2006
551
18

Human-chimpanzee differences in a FZD8 enhancer alter cell-cycle dynamics in the developing neocortex.
J Lomax Boyd, Stephanie L Skove, Jeremy P Rouanet, Louis-Jan Pilaz, Tristan Bepler, Raluca Gordân, Gregory A Wray, Debra L Silver. Curr Biol 2015
101
18

Fast-evolving noncoding sequences in the human genome.
Christine P Bird, Barbara E Stranger, Maureen Liu, Daryl J Thomas, Catherine E Ingle, Claude Beazley, Webb Miller, Matthew E Hurles, Emmanouil T Dermitzakis. Genome Biol 2007
96
18

Accelerated evolution of conserved noncoding sequences in humans.
Shyam Prabhakar, James P Noonan, Svante Pääbo, Edward M Rubin. Science 2006
245
18

Large recurrent microdeletions associated with schizophrenia.
Hreinn Stefansson, Dan Rujescu, Sven Cichon, Olli P H Pietiläinen, Andres Ingason, Stacy Steinberg, Ragnheidur Fossdal, Engilbert Sigurdsson, Thordur Sigmundsson, Jacobine E Buizer-Voskamp,[...]. Nature 2008
18

Changing the name of the NBPF/DUF1220 domain to the Olduvai domain.
James M Sikela, Frans van Roy. F1000Res 2017
8
75


Neuron number and size in prefrontal cortex of children with autism.
Eric Courchesne, Peter R Mouton, Michael E Calhoun, Katerina Semendeferi, Clelia Ahrens-Barbeau, Melodie J Hallet, Cynthia Carter Barnes, Karen Pierce. JAMA 2011
399
15

Strong association of de novo copy number mutations with autism.
Jonathan Sebat, B Lakshmi, Dheeraj Malhotra, Jennifer Troge, Christa Lese-Martin, Tom Walsh, Boris Yamrom, Seungtai Yoon, Alex Krasnitz, Jude Kendall,[...]. Science 2007
15

A humanized version of Foxp2 affects cortico-basal ganglia circuits in mice.
Wolfgang Enard, Sabine Gehre, Kurt Hammerschmidt, Sabine M Hölter, Torsten Blass, Mehmet Somel, Martina K Brückner, Christiane Schreiweis, Christine Winter, Reinhard Sohr,[...]. Cell 2009
279
15


A high-resolution map of human evolutionary constraint using 29 mammals.
Kerstin Lindblad-Toh, Manuel Garber, Or Zuk, Michael F Lin, Brian J Parker, Stefan Washietl, Pouya Kheradpour, Jason Ernst, Gregory Jordan, Evan Mauceli,[...]. Nature 2011
661
15


Forces shaping the fastest evolving regions in the human genome.
Katherine S Pollard, Sofie R Salama, Bryan King, Andrew D Kern, Tim Dreszer, Sol Katzman, Adam Siepel, Jakob S Pedersen, Gill Bejerano, Robert Baertsch,[...]. PLoS Genet 2006
253
15

Contrasts between adaptive coding and noncoding changes during human evolution.
Ralph Haygood, Courtney C Babbitt, Olivier Fedrigo, Gregory A Wray. Proc Natl Acad Sci U S A 2010
61
15

Diversity of human copy number variation and multicopy genes.
Peter H Sudmant, Jacob O Kitzman, Francesca Antonacci, Can Alkan, Maika Malig, Anya Tsalenko, Nick Sampas, Laurakay Bruhn, Jay Shendure, Evan E Eichler. Science 2010
433
15

Evolution and diversity of copy number variation in the great ape lineage.
Peter H Sudmant, John Huddleston, Claudia R Catacchio, Maika Malig, Ladeana W Hillier, Carl Baker, Kiana Mohajeri, Ivanela Kondova, Ronald E Bontrop, Stephan Persengiev,[...]. Genome Res 2013
84
15

High resolution measurement of DUF1220 domain copy number from whole genome sequence data.
David P Astling, Ilea E Heft, Kenneth L Jones, James M Sikela. BMC Genomics 2017
8
62


Functional impact of global rare copy number variation in autism spectrum disorders.
Dalila Pinto, Alistair T Pagnamenta, Lambertus Klei, Richard Anney, Daniele Merico, Regina Regan, Judith Conroy, Tiago R Magalhaes, Catarina Correia, Brett S Abrahams,[...]. Nature 2010
12

Molecular evolution of FOXP2, a gene involved in speech and language.
Wolfgang Enard, Molly Przeworski, Simon E Fisher, Cecilia S L Lai, Victor Wiebe, Takashi Kitano, Anthony P Monaco, Svante Pääbo. Nature 2002
631
12

Structural variation of chromosomes in autism spectrum disorder.
Christian R Marshall, Abdul Noor, John B Vincent, Anath C Lionel, Lars Feuk, Jennifer Skaug, Mary Shago, Rainald Moessner, Dalila Pinto, Yan Ren,[...]. Am J Hum Genet 2008
12

Brain volumes in schizophrenia: a meta-analysis in over 18 000 subjects.
Sander V Haijma, Neeltje Van Haren, Wiepke Cahn, P Cédric M P Koolschijn, Hilleke E Hulshoff Pol, René S Kahn. Schizophr Bull 2013
482
12


Evidence of brain overgrowth in the first year of life in autism.
Eric Courchesne, Ruth Carper, Natacha Akshoomoff. JAMA 2003
624
12

Refinement and discovery of new hotspots of copy-number variation associated with autism spectrum disorder.
Santhosh Girirajan, Megan Y Dennis, Carl Baker, Maika Malig, Bradley P Coe, Catarina D Campbell, Kenneth Mark, Tiffany H Vu, Can Alkan, Ze Cheng,[...]. Am J Hum Genet 2013
185
12

Human-specific gain of function in a developmental enhancer.
Shyam Prabhakar, Axel Visel, Jennifer A Akiyama, Malak Shoukry, Keith D Lewis, Amy Holt, Ingrid Plajzer-Frick, Harris Morrison, David R Fitzpatrick, Veena Afzal,[...]. Science 2008
199
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.