A citation-based method for searching scientific literature

Min Gao, Wei Wei, Ming-Ming Li, Yong-Sheng Wu, Zhaoqing Ba, Kang-Xuan Jin, Miao-Miao Li, You-Qi Liao, Samir Adhikari, Zechen Chong, Ting Zhang, Cai-Xia Guo, Tie-Shan Tang, Bing-Tao Zhu, Xing-Zhi Xu, Niels Mailand, Yun-Gui Yang, Yijun Qi, Jannie M Rendtlew Danielsen. Cell Res 2014
Times Cited: 125







List of co-cited articles
1422 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A role for small RNAs in DNA double-strand break repair.
Wei Wei, Zhaoqing Ba, Min Gao, Yang Wu, Yanting Ma, Simon Amiard, Charles I White, Jannie Michaela Rendtlew Danielsen, Yun-Gui Yang, Yijun Qi. Cell 2012
392
80

Site-specific DICER and DROSHA RNA products control the DNA-damage response.
Sofia Francia, Flavia Michelini, Alka Saxena, Dave Tang, Michiel de Hoon, Viviana Anelli, Marina Mione, Piero Carninci, Fabrizio d'Adda di Fagagna. Nature 2012
346
68


A small RNA response at DNA ends in Drosophila.
Katharina M Michalik, Romy Böttcher, Klaus Förstemann. Nucleic Acids Res 2012
97
34

The DNA damage response: making it safe to play with knives.
Alberto Ciccia, Stephen J Elledge. Mol Cell 2010
33

DICER, DROSHA and DNA damage response RNAs are necessary for the secondary recruitment of DNA damage response factors.
Sofia Francia, Matteo Cabrini, Valentina Matti, Amanda Oldani, Fabrizio d'Adda di Fagagna. J Cell Sci 2016
76
42

Damage-induced lncRNAs control the DNA damage response through interaction with DDRNAs at individual double-strand breaks.
Flavia Michelini, Sethuramasundaram Pitchiaya, Valerio Vitelli, Sheetal Sharma, Ubaldo Gioia, Fabio Pessina, Matteo Cabrini, Yejun Wang, Ilaria Capozzo, Fabio Iannelli,[...]. Nat Cell Biol 2017
166
30

Transient RNA-DNA Hybrids Are Required for Efficient Double-Strand Break Repair.
Corina Ohle, Rafael Tesorero, Géza Schermann, Nikolay Dobrev, Irmgard Sinning, Tamás Fischer. Cell 2016
211
29

Transcript-RNA-templated DNA recombination and repair.
Havva Keskin, Ying Shen, Fei Huang, Mikir Patel, Taehwan Yang, Katie Ashley, Alexander V Mazin, Francesca Storici. Nature 2014
192
27

Drosha drives the formation of DNA:RNA hybrids around DNA break sites to facilitate DNA repair.
Wei-Ting Lu, Ben R Hawley, George L Skalka, Robert A Baldock, Ewan M Smith, Aldo S Bader, Michal Malewicz, Felicity Z Watts, Ania Wilczynska, Martin Bushell. Nat Commun 2018
107
24

The DNA-damage response in human biology and disease.
Stephen P Jackson, Jiri Bartek. Nature 2009
21

A direct role for small non-coding RNAs in DNA damage response.
Fabrizio d'Adda di Fagagna. Trends Cell Biol 2014
93
20

qiRNA is a new type of small interfering RNA induced by DNA damage.
Heng-Chi Lee, Shwu-Shin Chang, Swati Choudhary, Antti P Aalto, Mekhala Maiti, Dennis H Bamford, Yi Liu. Nature 2009
190
19

BRCA2 controls DNA:RNA hybrid level at DSBs by mediating RNase H2 recruitment.
Giuseppina D'Alessandro, Donna Rose Whelan, Sean Michael Howard, Valerio Vitelli, Xavier Renaudin, Marek Adamowicz, Fabio Iannelli, Corey Winston Jones-Weinert, MiYoung Lee, Valentina Matti,[...]. Nat Commun 2018
105
19


Classical non-homologous end-joining pathway utilizes nascent RNA for error-free double-strand break repair of transcribed genes.
Anirban Chakraborty, Nisha Tapryal, Tatiana Venkova, Nobuo Horikoshi, Raj K Pandita, Altaf H Sarker, Partha S Sarkar, Tej K Pandita, Tapas K Hazra. Nat Commun 2016
99
16

Senataxin resolves RNA:DNA hybrids forming at DNA double-strand breaks to prevent translocations.
Sarah Cohen, Nadine Puget, Yea-Lih Lin, Thomas Clouaire, Marion Aguirrebengoa, Vincent Rocher, Philippe Pasero, Yvan Canitrot, Gaëlle Legube. Nat Commun 2018
146
16

Argonaute proteins couple chromatin silencing to alternative splicing.
Maya Ameyar-Zazoua, Christophe Rachez, Mouloud Souidi, Philippe Robin, Lauriane Fritsch, Robert Young, Nadya Morozova, Romain Fenouil, Nicolas Descostes, Jean-Christophe Andrau,[...]. Nat Struct Mol Biol 2012
198
15

53BP1 exchanges slowly at the sites of DNA damage and appears to require RNA for its association with chromatin.
Fiona Pryde, Shirin Khalili, Kathryn Robertson, Jim Selfridge, Ann-Marie Ritchie, David W Melton, Denis Jullien, Yasuhisa Adachi. J Cell Sci 2005
95
15

ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks.
Niraj M Shanbhag, Ilona U Rafalska-Metcalf, Carlo Balane-Bolivar, Susan M Janicki, Roger A Greenberg. Cell 2010
481
15

RNA-templated DNA repair.
Francesca Storici, Katarzyna Bebenek, Thomas A Kunkel, Dmitry A Gordenin, Michael A Resnick. Nature 2007
154
15

Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks.
François Aymard, Beatrix Bugler, Christine K Schmidt, Emmanuelle Guillou, Pierre Caron, Sébastien Briois, Jason S Iacovoni, Virginie Daburon, Kyle M Miller, Stephen P Jackson,[...]. Nat Struct Mol Biol 2014
365
15

DNA damage response inhibition at dysfunctional telomeres by modulation of telomeric DNA damage response RNAs.
Francesca Rossiello, Julio Aguado, Sara Sepe, Fabio Iannelli, Quan Nguyen, Sethuramasundaram Pitchiaya, Piero Carninci, Fabrizio d'Adda di Fagagna. Nat Commun 2017
51
29

ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.
Shuhei Matsuoka, Bryan A Ballif, Agata Smogorzewska, E Robert McDonald, Kristen E Hurov, Ji Luo, Corey E Bakalarski, Zhenming Zhao, Nicole Solimini, Yaniv Lerenthal,[...]. Science 2007
14

DNAPKcs-dependent arrest of RNA polymerase II transcription in the presence of DNA breaks.
Tibor Pankotai, Céline Bonhomme, David Chen, Evi Soutoglou. Nat Struct Mol Biol 2012
152
14


Nuclear phosphorylated Dicer processes double-stranded RNA in response to DNA damage.
Kaspar Burger, Margarita Schlackow, Martin Potts, Svenja Hester, Shabaz Mohammed, Monika Gullerova. J Cell Biol 2017
47
29

Efficient Generation of diRNAs Requires Components in the Posttranscriptional Gene Silencing Pathway.
Daisuke Miki, Peiying Zhu, Wencan Zhang, Yanfei Mao, Zhengyan Feng, Huan Huang, Hui Zhang, Yanqiang Li, Renyi Liu, Huiming Zhang,[...]. Sci Rep 2017
25
56

Next-generation sequencing reveals two populations of damage-induced small RNAs at endogenous DNA double-strand breaks.
Franziska Bonath, Judit Domingo-Prim, Marcel Tarbier, Marc R Friedländer, Neus Visa. Nucleic Acids Res 2018
39
35

RNAi factors are present and active in human cell nuclei.
Keith T Gagnon, Liande Li, Yongjun Chu, Bethany A Janowski, David R Corey. Cell Rep 2014
234
13

Homology directed repair is unaffected by the absence of siRNAs in Drosophila melanogaster.
Ines Schmidts, Romy Böttcher, Milijana Mirkovic-Hösle, Klaus Förstemann. Nucleic Acids Res 2016
18
72

High-resolution profiling of gammaH2AX around DNA double strand breaks in the mammalian genome.
Jason S Iacovoni, Pierre Caron, Imen Lassadi, Estelle Nicolas, Laurent Massip, Didier Trouche, Gaëlle Legube. EMBO J 2010
322
13

Rad52 Inverse Strand Exchange Drives RNA-Templated DNA Double-Strand Break Repair.
Olga M Mazina, Havva Keskin, Kritika Hanamshet, Francesca Storici, Alexander V Mazin. Mol Cell 2017
74
17

Human Rad52 Promotes XPG-Mediated R-loop Processing to Initiate Transcription-Associated Homologous Recombination Repair.
Takaaki Yasuhara, Reona Kato, Yoshihiko Hagiwara, Bunsyo Shiotani, Motohiro Yamauchi, Shinichiro Nakada, Atsushi Shibata, Kiyoshi Miyagawa. Cell 2018
137
13

Requirement for PBAF in transcriptional repression and repair at DNA breaks in actively transcribed regions of chromatin.
Andreas Kakarougkas, Amani Ismail, Anna L Chambers, Enriqueta Riballo, Alex D Herbert, Julia Künzel, Markus Löbrich, Penny A Jeggo, Jessica A Downs. Mol Cell 2014
175
12

Dicer promotes transcription termination at sites of replication stress to maintain genome stability.
Stephane E Castel, Jie Ren, Sonali Bhattacharjee, An-Yun Chang, Mar Sánchez, Alberto Valbuena, Francisco Antequera, Robert A Martienssen. Cell 2014
83
14

RNA-mediated epigenetic regulation of gene expression.
Daniel Holoch, Danesh Moazed. Nat Rev Genet 2015
524
11

A genome-wide homologous recombination screen identifies the RNA-binding protein RBMX as a component of the DNA-damage response.
Britt Adamson, Agata Smogorzewska, Frederic D Sigoillot, Randall W King, Stephen J Elledge. Nat Cell Biol 2012
279
11

R-loops induce repressive chromatin marks over mammalian gene terminators.
Konstantina Skourti-Stathaki, Kinga Kamieniarz-Gdula, Nicholas J Proudfoot. Nature 2014
221
11

DEAD Box 1 Facilitates Removal of RNA and Homologous Recombination at DNA Double-Strand Breaks.
Lei Li, Devon R Germain, Ho-Yin Poon, Matthew R Hildebrandt, Elizabeth A Monckton, Darin McDonald, Michael J Hendzel, Roseline Godbout. Mol Cell Biol 2016
73
15

Functional transcription promoters at DNA double-strand breaks mediate RNA-driven phase separation of damage-response factors.
Fabio Pessina, Fabio Giavazzi, Yandong Yin, Ubaldo Gioia, Valerio Vitelli, Alessandro Galbiati, Sara Barozzi, Massimiliano Garre, Amanda Oldani, Andrew Flaus,[...]. Nat Cell Biol 2019
110
11

Argonaute2 is the catalytic engine of mammalian RNAi.
Jidong Liu, Michelle A Carmell, Fabiola V Rivas, Carolyn G Marsden, J Michael Thomson, Ji-Joon Song, Scott M Hammond, Leemor Joshua-Tor, Gregory J Hannon. Science 2004
10


Mechanism of siRNA production from repetitive DNA.
Qiuying Yang, Qiaohong Anne Ye, Yi Liu. Genes Dev 2015
26
38

ATM, ATR, and DNA-PK: The Trinity at the Heart of the DNA Damage Response.
Andrew N Blackford, Stephen P Jackson. Mol Cell 2017
730
10

How RNA transcripts coordinate DNA recombination and repair.
Shane McDevitt, Timur Rusanov, Tatiana Kent, Gurushankar Chandramouly, Richard T Pomerantz. Nat Commun 2018
34
29

Human nuclear Dicer restricts the deleterious accumulation of endogenous double-stranded RNA.
Eleanor White, Margarita Schlackow, Kinga Kamieniarz-Gdula, Nick J Proudfoot, Monika Gullerova. Nat Struct Mol Biol 2014
73
12

Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs.
Gunter Meister, Markus Landthaler, Agnieszka Patkaniowska, Yair Dorsett, Grace Teng, Thomas Tuschl. Mol Cell 2004
9

Ago1 Interacts with RNA polymerase II and binds to the promoters of actively transcribed genes in human cancer cells.
Vera Huang, Jiashun Zheng, Zhongxia Qi, Ji Wang, Robert F Place, Jingwei Yu, Hao Li, Long-Cheng Li. PLoS Genet 2013
90
10



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.