A citation-based method for searching scientific literature

Nicholas Stong, Zhong Deng, Ravi Gupta, Sufen Hu, Shiela Paul, Amber K Weiner, Evan E Eichler, Tina Graves, Catrina C Fronick, Laura Courtney, Richard K Wilson, Paul M Lieberman, Ramana V Davuluri, Harold Riethman. Genome Res 2014
Times Cited: 40







List of co-cited articles
335 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


CpG-island promoters drive transcription of human telomeres.
Solomon G Nergadze, Benjamin O Farnung, Harry Wischnewski, Lela Khoriauli, Valerio Vitelli, Raghav Chawla, Elena Giulotto, Claus M Azzalin. RNA 2009
147
55

Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends.
Claus M Azzalin, Patrick Reichenbach, Lela Khoriauli, Elena Giulotto, Joachim Lingner. Science 2007
809
55

Functional characterization of the TERRA transcriptome at damaged telomeres.
Antonio Porro, Sascha Feuerhahn, Julien Delafontaine, Harold Riethman, Jacques Rougemont, Joachim Lingner. Nat Commun 2014
130
42


TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres.
Zhong Deng, Julie Norseen, Andreas Wiedmer, Harold Riethman, Paul M Lieberman. Mol Cell 2009
345
40


A role for CTCF and cohesin in subtelomere chromatin organization, TERRA transcription, and telomere end protection.
Zhong Deng, Zhuo Wang, Nick Stong, Robert Plasschaert, Aliah Moczan, Horng-Shen Chen, Sufeng Hu, Priyankara Wikramasinghe, Ramana V Davuluri, Marisa S Bartolomei,[...]. EMBO J 2012
103
37


RNaseH1 regulates TERRA-telomeric DNA hybrids and telomere maintenance in ALT tumour cells.
Rajika Arora, Yongwoo Lee, Harry Wischnewski, Catherine M Brun, Tobias Schwarz, Claus M Azzalin. Nat Commun 2014
196
32

Telomere length regulates TERRA levels through increased trimethylation of telomeric H3K9 and HP1α.
Nausica Arnoult, Amandine Van Beneden, Anabelle Decottignies. Nat Struct Mol Biol 2012
151
27

Telomeres in ICF syndrome cells are vulnerable to DNA damage due to elevated DNA:RNA hybrids.
Shira Sagie, Shir Toubiana, Stella R Hartono, Hagar Katzir, Aya Tzur-Gilat, Shany Havazelet, Claire Francastel, Guillaume Velasco, Frédéric Chédin, Sara Selig. Nat Commun 2017
52
27

Telomeric RNA-DNA hybrids affect telomere-length dynamics and senescence.
Bettina Balk, André Maicher, Martina Dees, Julia Klermund, Sarah Luke-Glaser, Katharina Bender, Brian Luke. Nat Struct Mol Biol 2013
177
25

Telomeric noncoding RNA TERRA is induced by telomere shortening to nucleate telomerase molecules at short telomeres.
Emilio Cusanelli, Carmina Angelica Perez Romero, Pascal Chartrand. Mol Cell 2013
133
25

TERRA, CpG methylation and telomere heterochromatin: lessons from ICF syndrome cells.
Zhong Deng, Amy E Campbell, Paul M Lieberman. Cell Cycle 2010
64
25

MLL associates with telomeres and regulates telomeric repeat-containing RNA transcription.
Corrado Caslini, James A Connelly, Amparo Serna, Dominique Broccoli, Jay L Hess. Mol Cell Biol 2009
90
22

Telomere functions grounding on TERRA firma.
Claus M Azzalin, Joachim Lingner. Trends Cell Biol 2015
111
22

The epigenetic regulation of mammalian telomeres.
María A Blasco. Nat Rev Genet 2007
461
22

TERRA and hnRNPA1 orchestrate an RPA-to-POT1 switch on telomeric single-stranded DNA.
Rachel Litman Flynn, Richard C Centore, Roderick J O'Sullivan, Rekha Rai, Alice Tse, Zhou Songyang, Sandy Chang, Jan Karlseder, Lee Zou. Nature 2011
221
20

Identification of TERRA locus unveils a telomere protection role through association to nearly all chromosomes.
Isabel López de Silanes, Osvaldo Graña, Maria Luigia De Bonis, Orlando Dominguez, David G Pisano, Maria A Blasco. Nat Commun 2014
54
20

Nuclear respiratory factor 1 and endurance exercise promote human telomere transcription.
Aurélie Diman, Joanna Boros, Florian Poulain, Julie Rodriguez, Marin Purnelle, Harikleia Episkopou, Luc Bertrand, Marc Francaux, Louise Deldicque, Anabelle Decottignies. Sci Adv 2016
43
20

Induced pluripotent stem cells as a model for telomeric abnormalities in ICF type I syndrome.
Shira Sagie, Erika Ellran, Hagar Katzir, Rony Shaked, Shiran Yehezkel, Ilana Laevsky, Alaa Ghanayim, Dan Geiger, Maty Tzukerman, Sara Selig. Hum Mol Genet 2014
21
38

Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication.
Elena V Linardopoulou, Eleanor M Williams, Yuxin Fan, Cynthia Friedman, Janet M Young, Barbara J Trask. Nature 2005
257
20

TERRA RNA Antagonizes ATRX and Protects Telomeres.
Hsueh-Ping Chu, Catherine Cifuentes-Rojas, Barry Kesner, Eric Aeby, Hun-Goo Lee, Chunyao Wei, Hyun Jung Oh, Myriam Boukhali, Wilhelm Haas, Jeannie T Lee. Cell 2017
99
20


The non-coding RNA TERRA is a natural ligand and direct inhibitor of human telomerase.
Sophie Redon, Patrick Reichenbach, Joachim Lingner. Nucleic Acids Res 2010
220
17

Subtelomeric p53 binding prevents accumulation of DNA damage at human telomeres.
Stephen Tutton, Greggory A Azzam, Nicholas Stong, Olga Vladimirova, Andreas Wiedmer, Jessica A Monteith, Kate Beishline, Zhuo Wang, Zhong Deng, Harold Riethman,[...]. EMBO J 2016
33
21

Structural stability and chromosome-specific telomere length is governed by cis-acting determinants in humans.
Bethan Britt-Compton, Jan Rowson, Matthew Locke, Ian Mackenzie, David Kipling, Duncan M Baird. Hum Mol Genet 2006
87
17

Extensive allelic variation and ultrashort telomeres in senescent human cells.
Duncan M Baird, Jan Rowson, David Wynford-Thomas, David Kipling. Nat Genet 2003
355
17

Characterization and rescue of telomeric abnormalities in ICF syndrome type I fibroblasts.
Shiran Yehezkel, Rony Shaked, Shira Sagie, Ron Berkovitz, Hofit Shachar-Bener, Yardena Segev, Sara Selig. Front Oncol 2013
23
30

Shelterin-Mediated Telomere Protection.
Titia de Lange. Annu Rev Genet 2018
206
17

Human subtelomere structure and variation.
H Riethman, A Ambrosini, S Paul. Chromosome Res 2005
78
15

Alternative lengthening of telomeres renders cancer cells hypersensitive to ATR inhibitors.
Rachel Litman Flynn, Kelli E Cox, Maya Jeitany, Hiroaki Wakimoto, Alysia R Bryll, Neil J Ganem, Francesca Bersani, Jose R Pineda, Mario L Suvà, Cyril H Benes,[...]. Science 2015
241
15


TERRA promotes telomerase-mediated telomere elongation in Schizosaccharomyces pombe.
Martin Moravec, Harry Wischnewski, Amadou Bah, Yan Hu, Na Liu, Lorenzo Lafranchi, Megan C King, Claus M Azzalin. EMBO Rep 2016
46
15

Alternative Lengthening of Telomeres is characterized by reduced compaction of telomeric chromatin.
Harikleia Episkopou, Irena Draskovic, Amandine Van Beneden, Gaëlle Tilman, Marina Mattiussi, Matthieu Gobin, Nausica Arnoult, Arturo Londoño-Vallejo, Anabelle Decottignies. Nucleic Acids Res 2014
96
15

Chromosome instability and immunodeficiency syndrome caused by mutations in a DNA methyltransferase gene.
G L Xu, T H Bestor, D Bourc'his, C L Hsieh, N Tommerup, M Bugge, M Hulten, X Qu, J J Russo, E Viegas-Péquignot. Nature 1999
823
15

A highly conserved repetitive DNA sequence, (TTAGGG)n, present at the telomeres of human chromosomes.
R K Moyzis, J M Buckingham, L S Cram, M Dani, L L Deaven, M D Jones, J Meyne, R L Ratliff, J R Wu. Proc Natl Acad Sci U S A 1988
15


Structure and variability of human chromosome ends.
T de Lange, L Shiue, R M Myers, D R Cox, S L Naylor, A M Killery, H E Varmus. Mol Cell Biol 1990
681
15

The complex structure and dynamic evolution of human subtelomeres.
Heather C Mefford, Barbara J Trask. Nat Rev Genet 2002
218
15

A quantitative telomeric chromatin isolation protocol identifies different telomeric states.
Larissa Grolimund, Eric Aeby, Romain Hamelin, Florence Armand, Diego Chiappe, Marc Moniatte, Joachim Lingner. Nat Commun 2013
66
12

TERRA transcripts are bound by a complex array of RNA-binding proteins.
Isabel López de Silanes, Martina Stagno d'Alcontres, Maria A Blasco. Nat Commun 2010
94
12

Human subtelomeric copy number variations.
H Riethman. Cytogenet Genome Res 2008
27
18

Telomere position effect: regulation of gene expression with progressive telomere shortening over long distances.
Jérôme D Robin, Andrew T Ludlow, Kimberly Batten, Frédérique Magdinier, Guido Stadler, Kathyrin R Wagner, Jerry W Shay, Woodring E Wright. Genes Dev 2014
143
12

Mapping and initial analysis of human subtelomeric sequence assemblies.
Harold Riethman, Anthony Ambrosini, Carlos Castaneda, Jeffrey Finklestein, Xue-Lan Hu, Uma Mudunuri, Sheila Paul, Jun Wei. Genome Res 2004
75
12

Human subtelomeric WASH genes encode a new subclass of the WASP family.
Elena V Linardopoulou, Sean S Parghi, Cynthia Friedman, Gregory E Osborn, Susan M Parkhurst, Barbara J Trask. PLoS Genet 2007
141
12

The Rat1p 5' to 3' exonuclease degrades telomeric repeat-containing RNA and promotes telomere elongation in Saccharomyces cerevisiae.
Brian Luke, Andrea Panza, Sophie Redon, Nahid Iglesias, Zhijian Li, Joachim Lingner. Mol Cell 2008
204
12

TERRA and the state of the telomere.
Karsten Rippe, Brian Luke. Nat Struct Mol Biol 2015
72
12


The THO complex component Thp2 counteracts telomeric R-loops and telomere shortening.
Verena Pfeiffer, Jérôme Crittin, Larissa Grolimund, Joachim Lingner. EMBO J 2013
83
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.