A citation-based method for searching scientific literature

Seung Wook Oh, Julie A Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M Henry, Marty T Mortrud, Benjamin Ouellette, Thuc Nghi Nguyen, Staci A Sorensen, Clifford R Slaughterbeck, Wayne Wakeman, Yang Li, David Feng, Anh Ho, Eric Nicholas, Karla E Hirokawa, Phillip Bohn, Kevin M Joines, Hanchuan Peng, Michael J Hawrylycz, John W Phillips, John G Hohmann, Paul Wohnoutka, Charles R Gerfen, Christof Koch, Amy Bernard, Chinh Dang, Allan R Jones, Hongkui Zeng. Nature 2014
Times Cited: 988







List of co-cited articles
744 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genome-wide atlas of gene expression in the adult mouse brain.
Ed S Lein, Michael J Hawrylycz, Nancy Ao, Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F Boe, Mark S Boguski, Kevin S Brockway, Emi J Byrnes,[...]. Nature 2007
19

Hierarchical organization of cortical and thalamic connectivity.
Julie A Harris, Stefan Mihalas, Karla E Hirokawa, Jennifer D Whitesell, Hannah Choi, Amy Bernard, Phillip Bohn, Shiella Caldejon, Linzy Casal, Andrew Cho,[...]. Nature 2019
78
21

A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons.
D Gowanlock R Tervo, Bum-Yeol Hwang, Sarada Viswanathan, Thomas Gaj, Maria Lavzin, Kimberly D Ritola, Sarah Lindo, Susan Michael, Elena Kuleshova, David Ojala,[...]. Neuron 2016
415
15

Neural networks of the mouse neocortex.
Brian Zingg, Houri Hintiryan, Lin Gou, Monica Y Song, Maxwell Bay, Michael S Bienkowski, Nicholas N Foster, Seita Yamashita, Ian Bowman, Arthur W Toga,[...]. Cell 2014
338
14

Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain.
Johan Winnubst, Erhan Bas, Tiago A Ferreira, Zhuhao Wu, Michael N Economo, Patrick Edson, Ben J Arthur, Christopher Bruns, Konrad Rokicki, David Schauder,[...]. Cell 2019
85
16

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas.
Quanxin Wang, Song-Lin Ding, Yang Li, Josh Royall, David Feng, Phil Lesnar, Nile Graddis, Maitham Naeemi, Benjamin Facer, Anh Ho,[...]. Cell 2020
73
17

The logic of single-cell projections from visual cortex.
Yunyun Han, Justus M Kebschull, Robert A A Campbell, Devon Cowan, Fabia Imhof, Anthony M Zador, Thomas D Mrsic-Flogel. Nature 2018
103
13

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
12

Shared and distinct transcriptomic cell types across neocortical areas.
Bosiljka Tasic, Zizhen Yao, Lucas T Graybuck, Kimberly A Smith, Thuc Nghi Nguyen, Darren Bertagnolli, Jeff Goldy, Emma Garren, Michael N Economo, Sarada Viswanathan,[...]. Nature 2018
358
12

Structural and molecular interrogation of intact biological systems.
Kwanghun Chung, Jenelle Wallace, Sung-Yon Kim, Sandhiya Kalyanasundaram, Aaron S Andalman, Thomas J Davidson, Julie J Mirzabekov, Kelly A Zalocusky, Joanna Mattis, Aleksandra K Denisin,[...]. Nature 2013
11

The neocortical circuit: themes and variations.
Kenneth D Harris, Gordon M G Shepherd. Nat Neurosci 2015
384
11

AAV-Mediated Anterograde Transsynaptic Tagging: Mapping Corticocollicular Input-Defined Neural Pathways for Defense Behaviors.
Brian Zingg, Xiao-Lin Chou, Zheng-Gang Zhang, Lukas Mesik, Feixue Liang, Huizhong Whit Tao, Li I Zhang. Neuron 2017
202
10

Serial two-photon tomography for automated ex vivo mouse brain imaging.
Timothy Ragan, Lolahon R Kadiri, Kannan Umadevi Venkataraju, Karsten Bahlmann, Jason Sutin, Julian Taranda, Ignacio Arganda-Carreras, Yongsoo Kim, H Sebastian Seung, Pavel Osten. Nat Methods 2012
301
9

A platform for brain-wide imaging and reconstruction of individual neurons.
Michael N Economo, Nathan G Clack, Luke D Lavis, Charles R Gerfen, Karel Svoboda, Eugene W Myers, Jayaram Chandrashekar. Elife 2016
169
9

Clarifying Tissue Clearing.
Douglas S Richardson, Jeff W Lichtman. Cell 2015
513
9

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
9

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality.
Tanya L Daigle, Linda Madisen, Travis A Hage, Matthew T Valley, Ulf Knoblich, Rylan S Larsen, Marc M Takeno, Lawrence Huang, Hong Gu, Rachael Larsen,[...]. Cell 2018
160
9

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
8

Neuroinformatics of the Allen Mouse Brain Connectivity Atlas.
Leonard Kuan, Yang Li, Chris Lau, David Feng, Amy Bernard, Susan M Sunkin, Hongkui Zeng, Chinh Dang, Michael Hawrylycz, Lydia Ng. Methods 2015
84
9

The subcellular organization of neocortical excitatory connections.
Leopoldo Petreanu, Tianyi Mao, Scott M Sternson, Karel Svoboda. Nature 2009
589
8

iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging.
Nicolas Renier, Zhuhao Wu, David J Simon, Jing Yang, Pablo Ariel, Marc Tessier-Lavigne. Cell 2014
601
8


Distinct descending motor cortex pathways and their roles in movement.
Michael N Economo, Sarada Viswanathan, Bosiljka Tasic, Erhan Bas, Johan Winnubst, Vilas Menon, Lucas T Graybuck, Thuc Nghi Nguyen, Kimberly A Smith, Zizhen Yao,[...]. Nature 2018
99
8

The mouse cortico-striatal projectome.
Houri Hintiryan, Nicholas N Foster, Ian Bowman, Maxwell Bay, Monica Y Song, Lin Gou, Seita Yamashita, Michael S Bienkowski, Brian Zingg, Muye Zhu,[...]. Nat Neurosci 2016
179
7

High-throughput dual-colour precision imaging for brain-wide connectome with cytoarchitectonic landmarks at the cellular level.
Hui Gong, Dongli Xu, Jing Yuan, Xiangning Li, Congdi Guo, Jie Peng, Yuxin Li, Lindsay A Schwarz, Anan Li, Bihe Hu,[...]. Nat Commun 2016
98
7

An interactive framework for whole-brain maps at cellular resolution.
Daniel Fürth, Thomas Vaissière, Ourania Tzortzi, Yang Xuan, Antje Märtin, Iakovos Lazaridis, Giada Spigolon, Gilberto Fisone, Raju Tomer, Karl Deisseroth,[...]. Nat Neurosci 2018
64
10

Network anatomy and in vivo physiology of visual cortical neurons.
Davi D Bock, Wei-Chung Allen Lee, Aaron M Kerlin, Mark L Andermann, Greg Hood, Arthur W Wetzel, Sergey Yurgenson, Edward R Soucy, Hyon Suk Kim, R Clay Reid. Nature 2011
464
7

Inhibition of inhibition in visual cortex: the logic of connections between molecularly distinct interneurons.
Carsten K Pfeffer, Mingshan Xue, Miao He, Z Josh Huang, Massimo Scanziani. Nat Neurosci 2013
626
7


Distributed coding of choice, action and engagement across the mouse brain.
Nicholas A Steinmetz, Peter Zatka-Haas, Matteo Carandini, Kenneth D Harris. Nature 2019
98
7

Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.
Etsuo A Susaki, Kazuki Tainaka, Dimitri Perrin, Fumiaki Kishino, Takehiro Tawara, Tomonobu M Watanabe, Chihiro Yokoyama, Hirotaka Onoe, Megumi Eguchi, Shun Yamaguchi,[...]. Cell 2014
609
7

How inhibition shapes cortical activity.
Jeffry S Isaacson, Massimo Scanziani. Neuron 2011
808
7

DeepLabCut: markerless pose estimation of user-defined body parts with deep learning.
Alexander Mathis, Pranav Mamidanna, Kevin M Cury, Taiga Abe, Venkatesh N Murthy, Mackenzie Weygandt Mathis, Matthias Bethge. Nat Neurosci 2018
412
7

An anatomically comprehensive atlas of the adult human brain transcriptome.
Michael J Hawrylycz, Ed S Lein, Angela L Guillozet-Bongaarts, Elaine H Shen, Lydia Ng, Jeremy A Miller, Louie N van de Lagemaat, Kimberly A Smith, Amanda Ebbert, Zackery L Riley,[...]. Nature 2012
6

Multimodal image registration and connectivity analysis for integration of connectomic data from microscopy to MRI.
Maged Goubran, Christoph Leuze, Brian Hsueh, Markus Aswendt, Li Ye, Qiyuan Tian, Michelle Y Cheng, Ailey Crow, Gary K Steinberg, Jennifer A McNab,[...]. Nat Commun 2019
21
28

Mapping brain circuitry with a light microscope.
Pavel Osten, Troy W Margrie. Nat Methods 2013
129
6

A motor cortex circuit for motor planning and movement.
Nuo Li, Tsai-Wen Chen, Zengcai V Guo, Charles R Gerfen, Karel Svoboda. Nature 2015
211
6

Flow of cortical activity underlying a tactile decision in mice.
Zengcai V Guo, Nuo Li, Daniel Huber, Eran Ophir, Diego Gutnisky, Jonathan T Ting, Guoping Feng, Karel Svoboda. Neuron 2014
281
6

Interneurons of the neocortical inhibitory system.
Henry Markram, Maria Toledo-Rodriguez, Yun Wang, Anirudh Gupta, Gilad Silberberg, Caizhi Wu. Nat Rev Neurosci 2004
6


Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes.
Nicolas Renier, Eliza L Adams, Christoph Kirst, Zhuhao Wu, Ricardo Azevedo, Johannes Kohl, Anita E Autry, Lolahon Kadiri, Kannan Umadevi Venkataraju, Yu Zhou,[...]. Cell 2016
271
6

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
6

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics.
Bosiljka Tasic, Vilas Menon, Thuc Nghi Nguyen, Tae Kyung Kim, Tim Jarsky, Zizhen Yao, Boaz Levi, Lucas T Gray, Staci A Sorensen, Tim Dolbeare,[...]. Nat Neurosci 2016
687
6

Corticostriatal connectivity and its role in disease.
Gordon M G Shepherd. Nat Rev Neurosci 2013
397
6

Monosynaptic restriction of transsynaptic tracing from single, genetically targeted neurons.
Ian R Wickersham, David C Lyon, Richard J O Barnard, Takuma Mori, Stefan Finke, Karl-Klaus Conzelmann, John A T Young, Edward M Callaway. Neuron 2007
673
6

A comprehensive excitatory input map of the striatum reveals novel functional organization.
Barbara J Hunnicutt, Bart C Jongbloets, William T Birdsong, Katrina J Gertz, Haining Zhong, Tianyi Mao. Elife 2016
157
6

Genetic Dissection of Neural Circuits: A Decade of Progress.
Liqun Luo, Edward M Callaway, Karel Svoboda. Neuron 2018
122
6

A developmental switch in the response of DRG neurons to ETS transcription factor signaling.
Simon Hippenmeyer, Eline Vrieseling, Markus Sigrist, Thomas Portmann, Celia Laengle, David R Ladle, Silvia Arber. PLoS Biol 2005
643
5

Brain-wide Maps Reveal Stereotyped Cell-Type-Based Cortical Architecture and Subcortical Sexual Dimorphism.
Yongsoo Kim, Guangyu Robert Yang, Kith Pradhan, Kannan Umadevi Venkataraju, Mihail Bota, Luis Carlos García Del Molino, Greg Fitzgerald, Keerthi Ram, Miao He, Jesse Maurica Levine,[...]. Cell 2017
102
5

aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data.
Christian J Niedworok, Alexander P Y Brown, M Jorge Cardoso, Pavel Osten, Sebastien Ourselin, Marc Modat, Troy W Margrie. Nat Commun 2016
26
19


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.