A citation-based method for searching scientific literature

Seung Wook Oh, Julie A Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M Henry, Marty T Mortrud, Benjamin Ouellette, Thuc Nghi Nguyen, Staci A Sorensen, Clifford R Slaughterbeck, Wayne Wakeman, Yang Li, David Feng, Anh Ho, Eric Nicholas, Karla E Hirokawa, Phillip Bohn, Kevin M Joines, Hanchuan Peng, Michael J Hawrylycz, John W Phillips, John G Hohmann, Paul Wohnoutka, Charles R Gerfen, Christof Koch, Amy Bernard, Chinh Dang, Allan R Jones, Hongkui Zeng. Nature 2014
Times Cited: 1187







List of co-cited articles
896 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas.
Quanxin Wang, Song-Lin Ding, Yang Li, Josh Royall, David Feng, Phil Lesnar, Nile Graddis, Maitham Naeemi, Benjamin Facer, Anh Ho,[...]. Cell 2020
187
18

Hierarchical organization of cortical and thalamic connectivity.
Julie A Harris, Stefan Mihalas, Karla E Hirokawa, Jennifer D Whitesell, Hannah Choi, Amy Bernard, Phillip Bohn, Shiella Caldejon, Linzy Casal, Andrew Cho,[...]. Nature 2019
136
18

Neural networks of the mouse neocortex.
Brian Zingg, Houri Hintiryan, Lin Gou, Monica Y Song, Maxwell Bay, Michael S Bienkowski, Nicholas N Foster, Seita Yamashita, Ian Bowman, Arthur W Toga,[...]. Cell 2014
399
17

Genome-wide atlas of gene expression in the adult mouse brain.
Ed S Lein, Michael J Hawrylycz, Nancy Ao, Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F Boe, Mark S Boguski, Kevin S Brockway, Emi J Byrnes,[...]. Nature 2007
14

Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain.
Johan Winnubst, Erhan Bas, Tiago A Ferreira, Zhuhao Wu, Michael N Economo, Patrick Edson, Ben J Arthur, Christopher Bruns, Konrad Rokicki, David Schauder,[...]. Cell 2019
147
13

The mouse cortico-striatal projectome.
Houri Hintiryan, Nicholas N Foster, Ian Bowman, Maxwell Bay, Monica Y Song, Lin Gou, Seita Yamashita, Michael S Bienkowski, Brian Zingg, Muye Zhu,[...]. Nat Neurosci 2016
228
11

A comprehensive excitatory input map of the striatum reveals novel functional organization.
Barbara J Hunnicutt, Bart C Jongbloets, William T Birdsong, Katrina J Gertz, Haining Zhong, Tianyi Mao. Elife 2016
194
9

A weighted and directed interareal connectivity matrix for macaque cerebral cortex.
N T Markov, M M Ercsey-Ravasz, A R Ribeiro Gomes, C Lamy, L Magrou, J Vezoli, P Misery, A Falchier, R Quilodran, M A Gariel,[...]. Cereb Cortex 2014
430
9

Serial two-photon tomography for automated ex vivo mouse brain imaging.
Timothy Ragan, Lolahon R Kadiri, Kannan Umadevi Venkataraju, Karsten Bahlmann, Jason Sutin, Julian Taranda, Ignacio Arganda-Carreras, Yongsoo Kim, H Sebastian Seung, Pavel Osten. Nat Methods 2012
344
8

elastix: a toolbox for intensity-based medical image registration.
Stefan Klein, Marius Staring, Keelin Murphy, Max A Viergever, Josien P W Pluim. IEEE Trans Med Imaging 2010
8

iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging.
Nicolas Renier, Zhuhao Wu, David J Simon, Jing Yang, Pablo Ariel, Marc Tessier-Lavigne. Cell 2014
736
8

Shared and distinct transcriptomic cell types across neocortical areas.
Bosiljka Tasic, Zizhen Yao, Lucas T Graybuck, Kimberly A Smith, Thuc Nghi Nguyen, Darren Bertagnolli, Jeff Goldy, Emma Garren, Michael N Economo, Sarada Viswanathan,[...]. Nature 2018
573
8


High-throughput dual-colour precision imaging for brain-wide connectome with cytoarchitectonic landmarks at the cellular level.
Hui Gong, Dongli Xu, Jing Yuan, Xiangning Li, Congdi Guo, Jie Peng, Yuxin Li, Lindsay A Schwarz, Anan Li, Bihe Hu,[...]. Nat Commun 2016
142
7

The human connectome: A structural description of the human brain.
Olaf Sporns, Giulio Tononi, Rolf Kötter. PLoS Comput Biol 2005
7

Structural and molecular interrogation of intact biological systems.
Kwanghun Chung, Jenelle Wallace, Sung-Yon Kim, Sandhiya Kalyanasundaram, Aaron S Andalman, Thomas J Davidson, Julie J Mirzabekov, Kelly A Zalocusky, Joanna Mattis, Aleksandra K Denisin,[...]. Nature 2013
7

The logic of single-cell projections from visual cortex.
Yunyun Han, Justus M Kebschull, Robert A A Campbell, Devon Cowan, Fabia Imhof, Anthony M Zador, Thomas D Mrsic-Flogel. Nature 2018
137
7

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
7

Spontaneous behaviors drive multidimensional, brainwide activity.
Carsen Stringer, Marius Pachitariu, Nicholas Steinmetz, Charu Bai Reddy, Matteo Carandini, Kenneth D Harris. Science 2019
337
7

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
7

A resource of Cre driver lines for genetic targeting of GABAergic neurons in cerebral cortex.
Hiroki Taniguchi, Miao He, Priscilla Wu, Sangyong Kim, Raehum Paik, Ken Sugino, Duda Kvitsiani, Yu Fu, Jiangteng Lu, Ying Lin,[...]. Neuron 2011
7

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality.
Tanya L Daigle, Linda Madisen, Travis A Hage, Matthew T Valley, Ulf Knoblich, Rylan S Larsen, Marc M Takeno, Lawrence Huang, Hong Gu, Rachael Larsen,[...]. Cell 2018
243
7

Micro-optical sectioning tomography to obtain a high-resolution atlas of the mouse brain.
Anan Li, Hui Gong, Bin Zhang, Qingdi Wang, Cheng Yan, Jingpeng Wu, Qian Liu, Shaoqun Zeng, Qingming Luo. Science 2010
263
6

Neuroinformatics of the Allen Mouse Brain Connectivity Atlas.
Leonard Kuan, Yang Li, Chris Lau, David Feng, Amy Bernard, Susan M Sunkin, Hongkui Zeng, Chinh Dang, Michael Hawrylycz, Lydia Ng. Methods 2015
103
6

Multimodal image registration and connectivity analysis for integration of connectomic data from microscopy to MRI.
Maged Goubran, Christoph Leuze, Brian Hsueh, Markus Aswendt, Li Ye, Qiyuan Tian, Michelle Y Cheng, Ailey Crow, Gary K Steinberg, Jennifer A McNab,[...]. Nat Commun 2019
32
18

A platform for brain-wide imaging and reconstruction of individual neurons.
Michael N Economo, Nathan G Clack, Luke D Lavis, Charles R Gerfen, Karel Svoboda, Eugene W Myers, Jayaram Chandrashekar. Elife 2016
211
6

AAV-Mediated Anterograde Transsynaptic Tagging: Mapping Corticocollicular Input-Defined Neural Pathways for Defense Behaviors.
Brian Zingg, Xiao-Lin Chou, Zheng-Gang Zhang, Lukas Mesik, Feixue Liang, Huizhong Whit Tao, Li I Zhang. Neuron 2017
276
6

Single-trial neural dynamics are dominated by richly varied movements.
Simon Musall, Matthew T Kaufman, Ashley L Juavinett, Steven Gluf, Anne K Churchland. Nat Neurosci 2019
232
6


A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons.
D Gowanlock R Tervo, Bum-Yeol Hwang, Sarada Viswanathan, Thomas Gaj, Maria Lavzin, Kimberly D Ritola, Sarah Lindo, Susan Michael, Elena Kuleshova, David Ojala,[...]. Neuron 2016
550
6

Building connectomes using diffusion MRI: why, how and but.
Stamatios N Sotiropoulos, Andrew Zalesky. NMR Biomed 2019
118
6


Enhanced and unified anatomical labeling for a common mouse brain atlas.
Uree Chon, Daniel J Vanselow, Keith C Cheng, Yongsoo Kim. Nat Commun 2019
38
13

Integration of gene expression and brain-wide connectivity reveals the multiscale organization of mouse hippocampal networks.
Michael S Bienkowski, Ian Bowman, Monica Y Song, Lin Gou, Tyler Ard, Kaelan Cotter, Muye Zhu, Nora L Benavidez, Seita Yamashita, Jaspar Abu-Jaber,[...]. Nat Neurosci 2018
86
5


Fully integrated silicon probes for high-density recording of neural activity.
James J Jun, Nicholas A Steinmetz, Joshua H Siegle, Daniel J Denman, Marius Bauza, Brian Barbarits, Albert K Lee, Costas A Anastassiou, Alexandru Andrei, Çağatay Aydın,[...]. Nature 2017
627
5

FSL.
Mark Jenkinson, Christian F Beckmann, Timothy E J Behrens, Mark W Woolrich, Stephen M Smith. Neuroimage 2012
5

Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes.
Nicolas Renier, Eliza L Adams, Christoph Kirst, Zhuhao Wu, Ricardo Azevedo, Johannes Kohl, Anita E Autry, Lolahon Kadiri, Kannan Umadevi Venkataraju, Yu Zhou,[...]. Cell 2016
342
5

Two-photon laser scanning fluorescence microscopy.
W Denk, J H Strickler, W W Webb. Science 1990
5

Mapping the Fine-Scale Organization and Plasticity of the Brain Vasculature.
Christoph Kirst, Sophie Skriabine, Alba Vieites-Prado, Thomas Topilko, Paul Bertin, Gaspard Gerschenfeld, Florine Verny, Piotr Topilko, Nicolas Michalski, Marc Tessier-Lavigne,[...]. Cell 2020
85
5

Architecture of the cerebral cortical association connectome underlying cognition.
Mihail Bota, Olaf Sporns, Larry W Swanson. Proc Natl Acad Sci U S A 2015
135
5

Predicting human resting-state functional connectivity from structural connectivity.
C J Honey, O Sporns, L Cammoun, X Gigandet, J P Thiran, R Meuli, P Hagmann. Proc Natl Acad Sci U S A 2009
5

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
5

Discrete attractor dynamics underlies persistent activity in the frontal cortex.
Hidehiko K Inagaki, Lorenzo Fontolan, Sandro Romani, Karel Svoboda. Nature 2019
91
5

Maintenance of persistent activity in a frontal thalamocortical loop.
Zengcai V Guo, Hidehiko K Inagaki, Kayvon Daie, Shaul Druckmann, Charles R Gerfen, Karel Svoboda. Nature 2017
220
5

Area map of mouse visual cortex.
Quanxin Wang, Andreas Burkhalter. J Comp Neurol 2007
300
5


High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
321
5

Precise Cerebral Vascular Atlas in Stereotaxic Coordinates of Whole Mouse Brain.
Benyi Xiong, Anan Li, Yang Lou, Shangbin Chen, Ben Long, Jie Peng, Zhongqin Yang, Tonghui Xu, Xiaoquan Yang, Xiangning Li,[...]. Front Neuroanat 2017
100
5

Brain-wide Maps Reveal Stereotyped Cell-Type-Based Cortical Architecture and Subcortical Sexual Dimorphism.
Yongsoo Kim, Guangyu Robert Yang, Kith Pradhan, Kannan Umadevi Venkataraju, Mihail Bota, Luis Carlos García Del Molino, Greg Fitzgerald, Keerthi Ram, Miao He, Jesse Maurica Levine,[...]. Cell 2017
138
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.