A citation-based method for searching scientific literature

Ayman Abunimer, Krista Smith, Tsung-Jung Wu, Phuc Lam, Vahan Simonyan, Raja Mazumder. Genes (Basel) 2014
Times Cited: 7







List of co-cited articles
48 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Protein S-nitrosylation: purview and parameters.
Douglas T Hess, Akio Matsumoto, Sung-Oog Kim, Harvey E Marshall, Jonathan S Stamler. Nat Rev Mol Cell Biol 2005
71

Identification of S-nitroso-CoA reductases that regulate protein S-nitrosylation.
Puneet Anand, Alfred Hausladen, Ya-Juan Wang, Guo-Fang Zhang, Colin Stomberski, Henri Brunengraber, Douglas T Hess, Jonathan S Stamler. Proc Natl Acad Sci U S A 2014
37
57

Protein S-nitrosylation in health and disease: a current perspective.
Matthew W Foster, Douglas T Hess, Jonathan S Stamler. Trends Mol Med 2009
497
42

Structural profiling of endogenous S-nitrosocysteine residues reveals unique features that accommodate diverse mechanisms for protein S-nitrosylation.
Paschalis-Thomas Doulias, Jennifer L Greene, Todd M Greco, Margarita Tenopoulou, Steve H Seeholzer, Roland L Dunbrack, Harry Ischiropoulos. Proc Natl Acad Sci U S A 2010
192
42

Endogenous protein S-Nitrosylation in E. coli: regulation by OxyR.
Divya Seth, Alfred Hausladen, Ya-Juan Wang, Jonathan S Stamler. Science 2012
112
42

Protein denitrosylation: enzymatic mechanisms and cellular functions.
Moran Benhar, Michael T Forrester, Jonathan S Stamler. Nat Rev Mol Cell Biol 2009
341
42

Proteomic analysis of S-nitrosylation and denitrosylation by resin-assisted capture.
Michael T Forrester, J Will Thompson, Matthew W Foster, Leonardo Nogueira, M Arthur Moseley, Jonathan S Stamler. Nat Biotechnol 2009
275
42

Protein S-Nitrosylation: Determinants of Specificity and Enzymatic Regulation of S-Nitrosothiol-Based Signaling.
Colin T Stomberski, Douglas T Hess, Jonathan S Stamler. Antioxid Redox Signal 2019
71
42

A Multiplex Enzymatic Machinery for Cellular Protein S-nitrosylation.
Divya Seth, Douglas T Hess, Alfred Hausladen, Liwen Wang, Ya-Juan Wang, Jonathan S Stamler. Mol Cell 2018
71
42

SNVDis: a proteome-wide analysis service for evaluating nsSNVs in protein functional sites and pathways.
Konstantinos Karagiannis, Vahan Simonyan, Raja Mazumder. Genomics Proteomics Bioinformatics 2013
11
28

Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data.
Charles Cole, Konstantinos Krampis, Konstantinos Karagiannis, Jonas S Almeida, William J Faison, Mona Motwani, Quan Wan, Anton Golikov, Yang Pan, Vahan Simonyan,[...]. BMC Bioinformatics 2014
9
28

Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes.
William J Faison, Alexandre Rostovtsev, Eduardo Castro-Nallar, Keith A Crandall, Konstantin Chumakov, Vahan Simonyan, Raja Mazumder. Genomics 2014
8
28

COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer.
Simon A Forbes, Nidhi Bindal, Sally Bamford, Charlotte Cole, Chai Yin Kok, David Beare, Mingming Jia, Rebecca Shepherd, Kenric Leung, Andrew Menzies,[...]. Nucleic Acids Res 2011
28

Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation.
Chuming Chen, Darren A Natale, Robert D Finn, Hongzhan Huang, Jian Zhang, Cathy H Wu, Raja Mazumder. PLoS One 2011
64
28

A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE).
Tsung-Jung Wu, Amirhossein Shamsaddini, Yang Pan, Krista Smith, Daniel J Crichton, Vahan Simonyan, Raja Mazumder. Database (Oxford) 2014
46
28

Dual Labeling Biotin Switch Assay to Reduce Bias Derived From Different Cysteine Subpopulations: A Method to Maximize S-Nitrosylation Detection.
Heaseung Sophia Chung, Christopher I Murray, Vidya Venkatraman, Erin L Crowgey, Peter P Rainer, Robert N Cole, Ryan D Bomgarden, John C Rogers, Wayne Balkan, Joshua M Hare,[...]. Circ Res 2015
16
28

S-Nitrosylation of Calcium-Handling Proteins in Cardiac Adrenergic Signaling and Hypertrophy.
Tomoya Irie, Patrick Y Sips, Shinichi Kai, Kotaro Kida, Kohei Ikeda, Shuichi Hirai, Kasra Moazzami, Pawina Jiramongkolchai, Donald B Bloch, Paschalis-Thomas Doulias,[...]. Circ Res 2015
40
28

Nitroxyl disulfides, novel intermediates in transnitrosation reactions.
K N Houk, Bruce N Hietbrink, Michael D Bartberger, Patrick R McCarren, Bo Yoon Choi, Robert D Voyksner, Jonathan S Stamler, Eric J Toone. J Am Chem Soc 2003
49
28


Site-Specific Proteomic Mapping Identifies Selectively Modified Regulatory Cysteine Residues in Functionally Distinct Protein Networks.
Neal S Gould, Perry Evans, Pablo Martínez-Acedo, Stefano M Marino, Vadim N Gladyshev, Kate S Carroll, Harry Ischiropoulos. Chem Biol 2015
72
28

S-nitrosylation of proteins with nitric oxide: synthesis and characterization of biologically active compounds.
J S Stamler, D I Simon, J A Osborne, M E Mullins, O Jaraki, T Michel, D J Singel, J Loscalzo. Proc Natl Acad Sci U S A 1992
28

Protein S-nitrosylation: a physiological signal for neuronal nitric oxide.
S R Jaffrey, H Erdjument-Bromage, C D Ferris, P Tempst, S H Snyder. Nat Cell Biol 2001
28

OxyR: a molecular code for redox-related signaling.
Sung Oog Kim, Kunal Merchant, Raphael Nudelman, Wayne F Beyer, Teresa Keng, Joseph DeAngelo, Alfred Hausladen, Jonathan S Stamler. Cell 2002
344
28


Identification and quantification of S-nitrosylation by cysteine reactive tandem mass tag switch assay.
Christopher I Murray, Helge Uhrigshardt, Robert N O'Meally, Robert N Cole, Jennifer E Van Eyk. Mol Cell Proteomics 2012
125
28

The SNO-proteome: causation and classifications.
Divya Seth, Jonathan S Stamler. Curr Opin Chem Biol 2011
168
28

Endogenous S-nitrosothiols protect against myocardial injury.
Brian Lima, Gregory K W Lam, Liang Xie, Diana L Diesen, Nestor Villamizar, Jeffrey Nienaber, Emily Messina, Dawn Bowles, Christopher D Kontos, Joshua M Hare,[...]. Proc Natl Acad Sci U S A 2009
173
28

Dynamic denitrosylation via S-nitrosoglutathione reductase regulates cardiovascular function.
Farideh Beigi, Daniel R Gonzalez, Khalid M Minhas, Qi-An Sun, Matthew W Foster, Shakil A Khan, Adriana V Treuer, Raul A Dulce, Robert W Harrison, Roberto M Saraiva,[...]. Proc Natl Acad Sci U S A 2012
84
28


A metabolic enzyme for S-nitrosothiol conserved from bacteria to humans.
L Liu, A Hausladen, M Zeng, L Que, J Heitman, J S Stamler. Nature 2001
642
28

Mechanism of human aldehyde reductase: characterization of the active site pocket.
O A Barski, K H Gabbay, C E Grimshaw, K M Bohren. Biochemistry 1995
111
28

Export by red blood cells of nitric oxide bioactivity.
J R Pawloski, D T Hess, J S Stamler. Nature 2001
424
28

The aldo-keto reductase superfamily and its role in drug metabolism and detoxification.
Oleg A Barski, Srinivas M Tipparaju, Aruni Bhatnagar. Drug Metab Rev 2008
277
28

Resonance description of S-nitrosothiols: insights into reactivity.
Qadir K Timerghazin, Gilles H Peslherbe, Ann M English. Org Lett 2007
33
28


Regulation of brain glutamate metabolism by nitric oxide and S-nitrosylation.
Karthik Raju, Paschalis-Thomas Doulias, Perry Evans, Elizabeth N Krizman, Joshua G Jackson, Oksana Horyn, Yevgeny Daikhin, Ilana Nissim, Marc Yudkoff, Itzhak Nissim,[...]. Sci Signal 2015
68
28

S-nitrosylation of beta-arrestin regulates beta-adrenergic receptor trafficking.
Kentaro Ozawa, Erin J Whalen, Christopher D Nelson, Yuanyu Mu, Douglas T Hess, Robert J Lefkowitz, Jonathan S Stamler. Mol Cell 2008
134
28

Ascorbate synthesis pathway: dual role of ascorbate in bone homeostasis.
Kenneth H Gabbay, Kurt M Bohren, Roy Morello, Terry Bertin, Jeff Liu, Peter Vogel. J Biol Chem 2010
66
28

Nitric oxide synthase generates nitric oxide locally to regulate compartmentalized protein S-nitrosylation and protein trafficking.
Yasuko Iwakiri, Ayano Satoh, Suvro Chatterjee, Derek K Toomre, Cecile M Chalouni, David Fulton, Roberto J Groszmann, Vijay H Shah, William C Sessa. Proc Natl Acad Sci U S A 2006
191
28


GAPDH mediates nitrosylation of nuclear proteins.
Michael D Kornberg, Nilkantha Sen, Makoto R Hara, Krishna R Juluri, Judy Van K Nguyen, Adele M Snowman, Lindsey Law, Lynda D Hester, Solomon H Snyder. Nat Cell Biol 2010
260
28



Ascaris haemoglobin is a nitric oxide-activated 'deoxygenase'.
D M Minning, A J Gow, J Bonaventura, R Braun, M Dewhirst, D E Goldberg, J S Stamler. Nature 1999
153
28

Human carbonyl reductase 1 is an S-nitrosoglutathione reductase.
Raynard L Bateman, Daniel Rauh, Brandon Tavshanjian, Kevan M Shokat. J Biol Chem 2008
101
28

Metabolic reprogramming by the S-nitroso-CoA reductase system protects against kidney injury.
Hua-Lin Zhou, Rongli Zhang, Puneet Anand, Colin T Stomberski, Zhaoxia Qian, Alfred Hausladen, Liwen Wang, Eugene P Rhee, Samir M Parikh, S Ananth Karumanchi,[...]. Nature 2019
60
28


S-nitrosylation drives cell senescence and aging in mammals by controlling mitochondrial dynamics and mitophagy.
Salvatore Rizza, Simone Cardaci, Costanza Montagna, Giuseppina Di Giacomo, Daniela De Zio, Matteo Bordi, Emiliano Maiani, Silvia Campello, Antonella Borreca, Annibale A Puca,[...]. Proc Natl Acad Sci U S A 2018
69
28

Standardizing next-generation sequencing experiments and analysis methods.
Jasmin H Bavarva, Wyatt McMahon, Megha J Bavarva, Enusha Karunasena, Harold R Garner. Clin Chem 2012
5
20

A comprehensive protein-centric ID mapping service for molecular data integration.
Hongzhan Huang, Peter B McGarvey, Baris E Suzek, Raja Mazumder, Jian Zhang, Yongxing Chen, Cathy H Wu. Bioinformatics 2011
37
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.