A citation-based method for searching scientific literature

Ron C Anafi, Yool Lee, Trey K Sato, Anand Venkataraman, Chidambaram Ramanathan, Ibrahim H Kavakli, Michael E Hughes, Julie E Baggs, Jacqueline Growe, Andrew C Liu, Junhyong Kim, John B Hogenesch. PLoS Biol 2014
Times Cited: 80







List of co-cited articles
1224 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A novel protein, CHRONO, functions as a core component of the mammalian circadian clock.
Akihiro Goriki, Fumiyuki Hatanaka, Jihwan Myung, Jae Kyoung Kim, Takashi Yoritaka, Shintaro Tanoue, Takaya Abe, Hiroshi Kiyonari, Katsumi Fujimoto, Yukio Kato,[...]. PLoS Biol 2014
87
47

A circadian gene expression atlas in mammals: implications for biology and medicine.
Ray Zhang, Nicholas F Lahens, Heather I Ballance, Michael E Hughes, John B Hogenesch. Proc Natl Acad Sci U S A 2014
45

Transcriptional architecture and chromatin landscape of the core circadian clock in mammals.
Nobuya Koike, Seung-Hee Yoo, Hung-Chung Huang, Vivek Kumar, Choogon Lee, Tae-Kyung Kim, Joseph S Takahashi. Science 2012
885
38


SIRT1 regulates circadian clock gene expression through PER2 deacetylation.
Gad Asher, David Gatfield, Markus Stratmann, Hans Reinke, Charna Dibner, Florian Kreppel, Raul Mostoslavsky, Frederick W Alt, Ueli Schibler. Cell 2008
925
27

Regulation of circadian behaviour and metabolism by REV-ERB-α and REV-ERB-β.
Han Cho, Xuan Zhao, Megumi Hatori, Ruth T Yu, Grant D Barish, Michael T Lam, Ling-Wa Chong, Luciano DiTacchio, Annette R Atkins, Christopher K Glass,[...]. Nature 2012
675
26

Gene model 129 (Gm129) encodes a novel transcriptional repressor that modulates circadian gene expression.
Yunus Annayev, Sheera Adar, Yi-Ying Chiou, Jason D Lieb, Aziz Sancar, Rui Ye. J Biol Chem 2014
38
52

The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator.
Nicolas Preitner, Francesca Damiola, Luis Lopez-Molina, Joszef Zakany, Denis Duboule, Urs Albrecht, Ueli Schibler. Cell 2002
25

The NAD+-dependent deacetylase SIRT1 modulates CLOCK-mediated chromatin remodeling and circadian control.
Yasukazu Nakahata, Milota Kaluzova, Benedetto Grimaldi, Saurabh Sahar, Jun Hirayama, Danica Chen, Leonard P Guarente, Paolo Sassone-Corsi. Cell 2008
962
23

Role of the CLOCK protein in the mammalian circadian mechanism.
N Gekakis, D Staknis, H B Nguyen, F C Davis, L D Wilsbacher, D P King, J S Takahashi, C J Weitz. Science 1998
22

Positional cloning of the mouse circadian clock gene.
D P King, Y Zhao, A M Sangoram, L D Wilsbacher, M Tanaka, M P Antoch, T D Steeves, M H Vitaterna, J M Kornhauser, P L Lowrey,[...]. Cell 1997
21

Coordinated transcription of key pathways in the mouse by the circadian clock.
Satchidananda Panda, Marina P Antoch, Brooke H Miller, Andrew I Su, Andrew B Schook, Marty Straume, Peter G Schultz, Steve A Kay, Joseph S Takahashi, John B Hogenesch. Cell 2002
20

Harmonics of circadian gene transcription in mammals.
Michael E Hughes, Luciano DiTacchio, Kevin R Hayes, Christopher Vollmers, S Pulivarthy, Julie E Baggs, Satchidananda Panda, John B Hogenesch. PLoS Genet 2009
455
20

A functional genomics strategy reveals Rora as a component of the mammalian circadian clock.
Trey K Sato, Satchidananda Panda, Loren J Miraglia, Teresa M Reyes, Radu D Rudic, Peter McNamara, Kinnery A Naik, Garret A FitzGerald, Steve A Kay, John B Hogenesch. Neuron 2004
729
18

Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver.
Guillaume Rey, François Cesbron, Jacques Rougemont, Hans Reinke, Michael Brunner, Felix Naef. PLoS Biol 2011
332
18

A genome-wide RNAi screen for modifiers of the circadian clock in human cells.
Eric E Zhang, Andrew C Liu, Tsuyoshi Hirota, Loren J Miraglia, Genevieve Welch, Pagkapol Y Pongsawakul, Xianzhong Liu, Ann Atwood, Jon W Huss, Jeff Janes,[...]. Cell 2009
306
18

SCFFbxl3 controls the oscillation of the circadian clock by directing the degradation of cryptochrome proteins.
Luca Busino, Florian Bassermann, Alessio Maiolica, Choogon Lee, Patrick M Nolan, Sofia I H Godinho, Giulio F Draetta, Michele Pagano. Science 2007
364
17

mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop.
K Kume, M J Zylka, S Sriram, L P Shearman, D R Weaver, X Jin, E S Maywood, M H Hastings, S M Reppert. Cell 1999
17

The histone methyltransferase MLL1 permits the oscillation of circadian gene expression.
Sayako Katada, Paolo Sassone-Corsi. Nat Struct Mol Biol 2010
187
17

System-level identification of transcriptional circuits underlying mammalian circadian clocks.
Hiroki R Ueda, Satoko Hayashi, Wenbin Chen, Motoaki Sano, Masayuki Machida, Yasufumi Shigeyoshi, Masamitsu Iino, Seiichi Hashimoto. Nat Genet 2005
585
17

PERIOD2::LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues.
Seung-Hee Yoo, Shin Yamazaki, Phillip L Lowrey, Kazuhiro Shimomura, Caroline H Ko, Ethan D Buhr, Sandra M Siepka, Hee-Kyung Hong, Won Jun Oh, Ook Joon Yoo,[...]. Proc Natl Acad Sci U S A 2004
17

Rhythmic histone acetylation underlies transcription in the mammalian circadian clock.
Jean-Pierre Etchegaray, Choogon Lee, Paul A Wade, Steven M Reppert. Nature 2003
500
16

Extensive and divergent circadian gene expression in liver and heart.
Kai-Florian Storch, Ovidiu Lipan, Igor Leykin, N Viswanathan, Fred C Davis, Wing H Wong, Charles J Weitz. Nature 2002
16

AMPK regulates the circadian clock by cryptochrome phosphorylation and degradation.
Katja A Lamia, Uma M Sachdeva, Luciano DiTacchio, Elliot C Williams, Jacqueline G Alvarez, Daniel F Egan, Debbie S Vasquez, Henry Juguilon, Satchidananda Panda, Reuben J Shaw,[...]. Science 2009
596
16

Nascent-Seq reveals novel features of mouse circadian transcriptional regulation.
Jerome S Menet, Joseph Rodriguez, Katharine C Abruzzi, Michael Rosbash. Elife 2012
228
16

Competing E3 ubiquitin ligases govern circadian periodicity by degradation of CRY in nucleus and cytoplasm.
Seung-Hee Yoo, Jennifer A Mohawk, Sandra M Siepka, Yongli Shan, Seong Kwon Huh, Hee-Kyung Hong, Izabela Kornblum, Vivek Kumar, Nobuya Koike, Ming Xu,[...]. Cell 2013
219
16

Circadian control of the NAD+ salvage pathway by CLOCK-SIRT1.
Yasukazu Nakahata, Saurabh Sahar, Giuseppe Astarita, Milota Kaluzova, Paolo Sassone-Corsi. Science 2009
825
16

Central and peripheral circadian clocks in mammals.
Jennifer A Mohawk, Carla B Green, Joseph S Takahashi. Annu Rev Neurosci 2012
16

Circadian regulator CLOCK is a histone acetyltransferase.
Masao Doi, Jun Hirayama, Paolo Sassone-Corsi. Cell 2006
588
15

Circadian mutant Overtime reveals F-box protein FBXL3 regulation of cryptochrome and period gene expression.
Sandra M Siepka, Seung-Hee Yoo, Junghea Park, Weimin Song, Vivek Kumar, Yinin Hu, Choogon Lee, Joseph S Takahashi. Cell 2007
392
15

Posttranslational mechanisms regulate the mammalian circadian clock.
C Lee, J P Etchegaray, F R Cagampang, A S Loudon, S M Reppert. Cell 2001
847
15

The genetics of mammalian circadian order and disorder: implications for physiology and disease.
Joseph S Takahashi, Hee-Kyung Hong, Caroline H Ko, Erin L McDearmon. Nat Rev Genet 2008
15


Rev-erbα and Rev-erbβ coordinately protect the circadian clock and normal metabolic function.
Anne Bugge, Dan Feng, Logan J Everett, Erika R Briggs, Shannon E Mullican, Fenfen Wang, Jennifer Jager, Mitchell A Lazar. Genes Dev 2012
338
15

Resetting of circadian time in peripheral tissues by glucocorticoid signaling.
A Balsalobre, S A Brown, L Marcacci, F Tronche, C Kellendonk, H M Reichardt, G Schütz, U Schibler. Science 2000
15

Coordination of circadian timing in mammals.
Steven M Reppert, David R Weaver. Nature 2002
15


Diurnal transcriptome atlas of a primate across major neural and peripheral tissues.
Ludovic S Mure, Hiep D Le, Giorgia Benegiamo, Max W Chang, Luis Rios, Ngalla Jillani, Maina Ngotho, Thomas Kariuki, Ouria Dkhissi-Benyahya, Howard M Cooper,[...]. Science 2018
323
15

Mammalian Cry1 and Cry2 are essential for maintenance of circadian rhythms.
G T van der Horst, M Muijtjens, K Kobayashi, R Takano, S Kanno, M Takao, J de Wit, A Verkerk, A P Eker, D van Leenen,[...]. Nature 1999
995
13

CIPC is a mammalian circadian clock protein without invertebrate homologues.
Wen-Ning Zhao, Nikolay Malinin, Fu-Chia Yang, David Staknis, Nicholas Gekakis, Bert Maier, Silke Reischl, Achim Kramer, Charles J Weitz. Nat Cell Biol 2007
54
20

A molecular mechanism for circadian clock negative feedback.
Hao A Duong, Maria S Robles, Darko Knutti, Charles J Weitz. Science 2011
194
13

FBXL21 regulates oscillation of the circadian clock through ubiquitination and stabilization of cryptochromes.
Arisa Hirano, Kanae Yumimoto, Ryosuke Tsunematsu, Masaki Matsumoto, Masaaki Oyama, Hiroko Kozuka-Hata, Tomoki Nakagawa, Darin Lanjakornsiripan, Keiichi I Nakayama, Yoshitaka Fukada. Cell 2013
173
13


Feedback regulation of transcriptional termination by the mammalian circadian clock PERIOD complex.
Kiran Padmanabhan, Maria S Robles, Thomas Westerling, Charles J Weitz. Science 2012
109
13


Cryptochrome 1 regulates the circadian clock through dynamic interactions with the BMAL1 C terminus.
Haiyan Xu, Chelsea L Gustafson, Patrick J Sammons, Sanjoy K Khan, Nicole C Parsley, Chidambaram Ramanathan, Hsiau-Wei Lee, Andrew C Liu, Carrie L Partch. Nat Struct Mol Biol 2015
96
13

Mutagenesis and mapping of a mouse gene, Clock, essential for circadian behavior.
M H Vitaterna, D P King, A M Chang, J M Kornhauser, P L Lowrey, J D McDonald, W F Dove, L H Pinto, F W Turek, J S Takahashi. Science 1994
13

Identification of small molecule activators of cryptochrome.
Tsuyoshi Hirota, Jae Wook Lee, Peter C St John, Mariko Sawa, Keiko Iwaisako, Takako Noguchi, Pagkapol Y Pongsawakul, Tim Sonntag, David K Welsh, David A Brenner,[...]. Science 2012
296
12

Control of mammalian circadian rhythm by CKIepsilon-regulated proteasome-mediated PER2 degradation.
Erik J Eide, Margaret F Woolf, Heeseog Kang, Peter Woolf, William Hurst, Fernando Camacho, Erica L Vielhaber, Andrew Giovanni, David M Virshup. Mol Cell Biol 2005
354
12

PERIOD1-associated proteins modulate the negative limb of the mammalian circadian oscillator.
Steven A Brown, Juergen Ripperger, Sebastian Kadener, Fabienne Fleury-Olela, Francis Vilbois, Michael Rosbash, Ueli Schibler. Science 2005
206
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.