A citation-based method for searching scientific literature

Erick W Loomis, Lionel A Sanz, Frédéric Chédin, Paul J Hagerman. PLoS Genet 2014
Times Cited: 116







List of co-cited articles
1603 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


R-loops associated with triplet repeat expansions promote gene silencing in Friedreich ataxia and fragile X syndrome.
Matthias Groh, Michele M P Lufino, Richard Wade-Martins, Natalia Gromak. PLoS Genet 2014
185
52

R loops: from transcription byproducts to threats to genome stability.
Andrés Aguilera, Tatiana García-Muse. Mol Cell 2012
555
33

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
402
32

Promoter-bound trinucleotide repeat mRNA drives epigenetic silencing in fragile X syndrome.
Dilek Colak, Nikica Zaninovic, Michael S Cohen, Zev Rosenwaks, Wang-Yong Yang, Jeannine Gerhardt, Matthew D Disney, Samie R Jaffrey. Science 2014
179
31

Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.
Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Natalia Gromak. Mol Cell 2011
417
29

R loops: new modulators of genome dynamics and function.
José M Santos-Pereira, Andrés Aguilera. Nat Rev Genet 2015
357
26

CGG repeat-associated translation mediates neurodegeneration in fragile X tremor ataxia syndrome.
Peter K Todd, Seok Yoon Oh, Amy Krans, Fang He, Chantal Sellier, Michelle Frazer, Abigail J Renoux, Kai-chun Chen, K Matthew Scaglione, Venkatesha Basrur,[...]. Neuron 2013
279
25

R-loops induce repressive chromatin marks over mammalian gene terminators.
Konstantina Skourti-Stathaki, Kinga Kamieniarz-Gdula, Nicholas J Proudfoot. Nature 2014
196
24

Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
260
23

Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome.
A J Verkerk, M Pieretti, J S Sutcliffe, Y H Fu, D P Kuhl, A Pizzuti, O Reiner, S Richards, M F Victoria, F P Zhang. Cell 1991
22

Breaking bad: R-loops and genome integrity.
Julie Sollier, Karlene A Cimprich. Trends Cell Biol 2015
183
22

GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination.
Paul A Ginno, Yoong Wearn Lim, Paul L Lott, Ian Korf, Frédéric Chédin. Genome Res 2013
188
21

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
214
21



Regional FMRP deficits and large repeat expansions into the full mutation range in a new Fragile X premutation mouse model.
Ali Entezam, Rea Biacsi, Bonnie Orrison, Tapas Saha, Gloria E Hoffman, Ed Grabczyk, Robert L Nussbaum, Karen Usdin. Gene 2007
135
18

Elevated levels of FMR1 mRNA in carrier males: a new mechanism of involvement in the fragile-X syndrome.
F Tassone, R J Hagerman, A K Taylor, L W Gane, T E Godfrey, P J Hagerman. Am J Hum Genet 2000
588
18

Determinants of R-loop formation at convergent bidirectionally transcribed trinucleotide repeats.
Kaalak Reddy, Mandy Tam, Richard P Bowater, Miriam Barber, Matthew Tomlinson, Kerrie Nichol Edamura, Yuh-Hwa Wang, Christopher E Pearson. Nucleic Acids Res 2011
87
19

Protein composition of the intranuclear inclusions of FXTAS.
C K Iwahashi, D H Yasui, H-J An, C M Greco, F Tassone, K Nannen, B Babineau, C B Lebrilla, R J Hagerman, P J Hagerman. Brain 2006
242
17

Sam68 sequestration and partial loss of function are associated with splicing alterations in FXTAS patients.
Chantal Sellier, Frédérique Rau, Yilei Liu, Flora Tassone, Renate K Hukema, Renata Gattoni, Anne Schneider, Stéphane Richard, Rob Willemsen, David J Elliott,[...]. EMBO J 2010
241
17

Sequestration of DROSHA and DGCR8 by expanded CGG RNA repeats alters microRNA processing in fragile X-associated tremor/ataxia syndrome.
Chantal Sellier, Fernande Freyermuth, Ricardos Tabet, Tuan Tran, Fang He, Frank Ruffenach, Violaine Alunni, Herve Moine, Christelle Thibault, Adeline Page,[...]. Cell Rep 2013
146
17

R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells.
Kefei Yu, Frederic Chedin, Chih-Lin Hsieh, Thomas E Wilson, Michael R Lieber. Nat Immunol 2003
493
17

BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.
Vaibhav Bhatia, Sonia I Barroso, María L García-Rubio, Emanuela Tumini, Emilia Herrera-Moyano, Andrés Aguilera. Nature 2014
267
17

R-loop-mediated genomic instability is caused by impairment of replication fork progression.
Wenjian Gan, Zhishuang Guan, Jie Liu, Ting Gui, Keng Shen, James L Manley, Xialu Li. Genes Dev 2011
237
17

C9orf72 nucleotide repeat structures initiate molecular cascades of disease.
Aaron R Haeusler, Christopher J Donnelly, Goran Periz, Eric A J Simko, Patrick G Shaw, Min-Sik Kim, Nicholas J Maragakis, Juan C Troncoso, Akhilesh Pandey, Rita Sattler,[...]. Nature 2014
532
16

Out of balance: R-loops in human disease.
Matthias Groh, Natalia Gromak. PLoS Genet 2014
95
15

An antisense transcript spanning the CGG repeat region of FMR1 is upregulated in premutation carriers but silenced in full mutation individuals.
Paula D Ladd, Leslie E Smith, Natalia A Rabaia, James M Moore, Sara A Georges, R Scott Hansen, Randi J Hagerman, Flora Tassone, Stephen J Tapscott, Galina N Filippova. Hum Mol Genet 2007
178
15

Pur alpha binds to rCGG repeats and modulates repeat-mediated neurodegeneration in a Drosophila model of fragile X tremor/ataxia syndrome.
Peng Jin, Ranhui Duan, Abrar Qurashi, Yunlong Qin, Donghua Tian, Tracie C Rosser, Huijie Liu, Yue Feng, Stephen T Warren. Neuron 2007
220
15


Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis.
Aziz El Hage, Sarah L French, Ann L Beyer, David Tollervey. Genes Dev 2010
269
15

Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription.
Sandie Tuduri, Laure Crabbé, Chiara Conti, Hélène Tourrière, Heidi Holtgreve-Grez, Anna Jauch, Véronique Pantesco, John De Vos, Aubin Thomas, Charles Theillet,[...]. Nat Cell Biol 2009
315
15

BRCA1 recruitment to transcriptional pause sites is required for R-loop-driven DNA damage repair.
Elodie Hatchi, Konstantina Skourti-Stathaki, Steffen Ventz, Luca Pinello, Angela Yen, Kinga Kamieniarz-Gdula, Stoil Dimitrov, Shailja Pathania, Kristine M McKinney, Matthew L Eaton,[...]. Mol Cell 2015
204
15

Translation of Expanded CGG Repeats into FMRpolyG Is Pathogenic and May Contribute to Fragile X Tremor Ataxia Syndrome.
Chantal Sellier, Ronald A M Buijsen, Fang He, Sam Natla, Laura Jung, Philippe Tropel, Angeline Gaucherot, Hugues Jacobs, Hamid Meziane, Alexandre Vincent,[...]. Neuron 2017
109
15

R loops stimulate genetic instability of CTG.CAG repeats.
Yunfu Lin, Sharon Y R Dent, John H Wilson, Robert D Wells, Marek Napierala. Proc Natl Acad Sci U S A 2010
124
14

R loops are linked to histone H3 S10 phosphorylation and chromatin condensation.
Maikel Castellano-Pozo, José M Santos-Pereira, Ana G Rondón, Sonia Barroso, Eloisa Andújar, Mónica Pérez-Alegre, Tatiana García-Muse, Andrés Aguilera. Mol Cell 2013
150
14

Genome-wide DNA hypomethylation and RNA:DNA hybrid accumulation in Aicardi-Goutières syndrome.
Yoong Wearn Lim, Lionel A Sanz, Xiaoqin Xu, Stella R Hartono, Frédéric Chédin. Elife 2015
90
15



Processing of double-R-loops in (CAG)·(CTG) and C9orf72 (GGGGCC)·(GGCCCC) repeats causes instability.
Kaalak Reddy, Monika H M Schmidt, Jaimie M Geist, Neha P Thakkar, Gagan B Panigrahi, Yuh-Hwa Wang, Christopher E Pearson. Nucleic Acids Res 2014
56
23


Neuronal intranuclear inclusions in a new cerebellar tremor/ataxia syndrome among fragile X carriers.
C M Greco, R J Hagerman, F Tassone, A E Chudley, M R Del Bigio, S Jacquemont, M Leehey, P J Hagerman. Brain 2002
375
13

Variation of the CGG repeat at the fragile X site results in genetic instability: resolution of the Sherman paradox.
Y H Fu, D P Kuhl, A Pizzuti, M Pieretti, J S Sutcliffe, S Richards, A J Verkerk, J J Holden, R G Fenwick, S T Warren. Cell 1991
13

R loops regulate promoter-proximal chromatin architecture and cellular differentiation.
Poshen B Chen, Hsiuyi V Chen, Diwash Acharya, Oliver J Rando, Thomas G Fazzio. Nat Struct Mol Biol 2015
75
17

RAN translation at CGG repeats induces ubiquitin proteasome system impairment in models of fragile X-associated tremor ataxia syndrome.
Seok Yoon Oh, Fang He, Amy Krans, Michelle Frazer, J Paul Taylor, Henry L Paulson, Peter K Todd. Hum Mol Genet 2015
54
24

Intention tremor, parkinsonism, and generalized brain atrophy in male carriers of fragile X.
R J Hagerman, M Leehey, W Heinrichs, F Tassone, R Wilson, J Hills, J Grigsby, B Gage, P J Hagerman. Neurology 2001
643
13

Yeast Sen1 helicase protects the genome from transcription-associated instability.
Hannah E Mischo, Belén Gómez-González, Pawel Grzechnik, Ana G Rondón, Wu Wei, Lars Steinmetz, Andrés Aguilera, Nick J Proudfoot. Mol Cell 2011
234
12




Early mitochondrial abnormalities in hippocampal neurons cultured from Fmr1 pre-mutation mouse model.
Eitan S Kaplan, Zhengyu Cao, Susan Hulsizer, Flora Tassone, Robert F Berman, Paul J Hagerman, Isaac N Pessah. J Neurochem 2012
52
23


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.