A citation-based method for searching scientific literature

Elinor K Karlsson, Dominic P Kwiatkowski, Pardis C Sabeti. Nat Rev Genet 2014
Times Cited: 201







List of co-cited articles
703 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
25


Signatures of environmental genetic adaptation pinpoint pathogens as the main selective pressure through human evolution.
Matteo Fumagalli, Manuela Sironi, Uberto Pozzoli, Anna Ferrer-Admetlla, Linda Pattini, Rasmus Nielsen. PLoS Genet 2011
266
18

Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens.
Yohann Nédélec, Joaquín Sanz, Golshid Baharian, Zachary A Szpiech, Alain Pacis, Anne Dumaine, Jean-Christophe Grenier, Andrew Freiman, Aaron J Sams, Steven Hebert,[...]. Cell 2016
180
17

Genetic Adaptation and Neandertal Admixture Shaped the Immune System of Human Populations.
Hélène Quach, Maxime Rotival, Julien Pothlichet, Yong-Hwee Eddie Loh, Michael Dannemann, Nora Zidane, Guillaume Laval, Etienne Patin, Christine Harmant, Marie Lopez,[...]. Cell 2016
161
17

A map of recent positive selection in the human genome.
Benjamin F Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K Pritchard. PLoS Biol 2006
16

Genomic Signatures of Selective Pressures and Introgression from Archaic Hominins at Human Innate Immunity Genes.
Matthieu Deschamps, Guillaume Laval, Maud Fagny, Yuval Itan, Laurent Abel, Jean-Laurent Casanova, Etienne Patin, Lluis Quintana-Murci. Am J Hum Genet 2016
114
14

Convergent adaptation of human lactase persistence in Africa and Europe.
Sarah A Tishkoff, Floyd A Reed, Alessia Ranciaro, Benjamin F Voight, Courtney C Babbitt, Jesse S Silverman, Kweli Powell, Holly M Mortensen, Jibril B Hirbo, Maha Osman,[...]. Nat Genet 2007
713
12


Identifying recent adaptations in large-scale genomic data.
Sharon R Grossman, Kristian G Andersen, Ilya Shlyakhter, Shervin Tabrizi, Sarah Winnicki, Angela Yen, Daniel J Park, Dustin Griesemer, Elinor K Karlsson, Sunny H Wong,[...]. Cell 2013
217
11

Detecting recent positive selection in the human genome from haplotype structure.
Pardis C Sabeti, David E Reich, John M Higgins, Haninah Z P Levine, Daniel J Richter, Stephen F Schaffner, Stacey B Gabriel, Jill V Platko, Nick J Patterson, Gavin J McDonald,[...]. Nature 2002
10

Genome-wide patterns of selection in 230 ancient Eurasians.
Iain Mathieson, Iosif Lazaridis, Nadin Rohland, Swapan Mallick, Nick Patterson, Songül Alpaslan Roodenberg, Eadaoin Harney, Kristin Stewardson, Daniel Fernandes, Mario Novak,[...]. Nature 2015
450
10

Population genetic tools for dissecting innate immunity in humans.
Lluís Quintana-Murci, Andrew G Clark. Nat Rev Immunol 2013
74
13

Dispersals and genetic adaptation of Bantu-speaking populations in Africa and North America.
Etienne Patin, Marie Lopez, Rebecca Grollemund, Paul Verdu, Christine Harmant, Hélène Quach, Guillaume Laval, George H Perry, Luis B Barreiro, Alain Froment,[...]. Science 2017
89
11

The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation.
Jonathan K Pritchard, Joseph K Pickrell, Graham Coop. Curr Biol 2010
501
10


PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
10

Sequencing of 50 human exomes reveals adaptation to high altitude.
Xin Yi, Yu Liang, Emilia Huerta-Sanchez, Xin Jin, Zha Xi Ping Cuo, John E Pool, Xun Xu, Hui Jiang, Nicolas Vinckenbosch, Thorfinn Sand Korneliussen,[...]. Science 2010
802
9


Going global by adapting local: A review of recent human adaptation.
Shaohua Fan, Matthew E B Hansen, Yancy Lo, Sarah A Tishkoff. Science 2016
108
9

Genome-wide detection and characterization of positive selection in human populations.
Pardis C Sabeti, Patrick Varilly, Ben Fry, Jason Lohmueller, Elizabeth Hostetter, Chris Cotsapas, Xiaohui Xie, Elizabeth H Byrne, Steven A McCarroll, Rachelle Gaudet,[...]. Nature 2007
9

A genetic atlas of human admixture history.
Garrett Hellenthal, George B J Busby, Gavin Band, James F Wilson, Cristian Capelli, Daniel Falush, Simon Myers. Science 2014
345
9

Adaptively introgressed Neandertal haplotype at the OAS locus functionally impacts innate immune responses in humans.
Aaron J Sams, Anne Dumaine, Yohann Nédélec, Vania Yotova, Carolina Alfieri, Jerome E Tanner, Philipp W Messer, Luis B Barreiro. Genome Biol 2016
48
18

Recent Adaptive Acquisition by African Rainforest Hunter-Gatherers of the Late Pleistocene Sickle-Cell Mutation Suggests Past Differences in Malaria Exposure.
Guillaume Laval, Stéphane Peyrégne, Nora Zidane, Christine Harmant, François Renaud, Etienne Patin, Franck Prugnolle, Lluis Quintana-Murci. Am J Hum Genet 2019
19
47


Tracing the peopling of the world through genomics.
Rasmus Nielsen, Joshua M Akey, Mattias Jakobsson, Jonathan K Pritchard, Sarah Tishkoff, Eske Willerslev. Nature 2017
192
8

Detecting natural selection in genomic data.
Joseph J Vitti, Sharon R Grossman, Pardis C Sabeti. Annu Rev Genet 2013
299
8

Dating the origin of the CCR5-Delta32 AIDS-resistance allele by the coalescence of haplotypes.
J C Stephens, D E Reich, D B Goldstein, H D Shin, M W Smith, M Carrington, C Winkler, G A Huttley, R Allikmets, L Schriml,[...]. Am J Hum Genet 1998
339
8

Human genome variability, natural selection and infectious diseases.
Matteo Fumagalli, Manuela Sironi. Curr Opin Immunol 2014
40
20

Positive natural selection in the human lineage.
P C Sabeti, S F Schaffner, B Fry, J Lohmueller, P Varilly, O Shamovsky, A Palma, T S Mikkelsen, D Altshuler, E S Lander. Science 2006
673
8

The complete genome sequence of a Neanderthal from the Altai Mountains.
Kay Prüfer, Fernando Racimo, Nick Patterson, Flora Jay, Sriram Sankararaman, Susanna Sawyer, Anja Heinze, Gabriel Renaud, Peter H Sudmant, Cesare de Filippo,[...]. Nature 2014
845
8


Origins of major human infectious diseases.
Nathan D Wolfe, Claire Panosian Dunavan, Jared Diamond. Nature 2007
624
7

A time transect of exomes from a Native American population before and after European contact.
John Lindo, Emilia Huerta-Sánchez, Shigeki Nakagome, Morten Rasmussen, Barbara Petzelt, Joycelynn Mitchell, Jerome S Cybulski, Eske Willerslev, Michael DeGiorgio, Ripan S Malhi. Nat Commun 2016
56
12

Signals of recent positive selection in a worldwide sample of human populations.
Joseph K Pickrell, Graham Coop, John Novembre, Sridhar Kudaravalli, Jun Z Li, Devin Absher, Balaji S Srinivasan, Gregory S Barsh, Richard M Myers, Marcus W Feldman,[...]. Genome Res 2009
495
7

Distinguishing between selective sweeps from standing variation and from a de novo mutation.
Benjamin M Peter, Emilia Huerta-Sanchez, Rasmus Nielsen. PLoS Genet 2012
102
7

A novel locus of resistance to severe malaria in a region of ancient balancing selection.
Gavin Band, Kirk A Rockett, Chris C A Spencer, Dominic P Kwiatkowski. Nature 2015
99
7


The shaping of modern human immune systems by multiregional admixture with archaic humans.
Laurent Abi-Rached, Matthew J Jobin, Subhash Kulkarni, Alasdair McWhinnie, Klara Dalva, Loren Gragert, Farbod Babrzadeh, Baback Gharizadeh, Ma Luo, Francis A Plummer,[...]. Science 2011
246
7


A population genetic signal of polygenic adaptation.
Jeremy J Berg, Graham Coop. PLoS Genet 2014
229
7


Advantageous diversity maintained by balancing selection in humans.
Felix M Key, João C Teixeira, Cesare de Filippo, Aida M Andrés. Curr Opin Genet Dev 2014
54
11

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans.
Iñaki Comas, Mireia Coscolla, Tao Luo, Sonia Borrell, Kathryn E Holt, Midori Kato-Maeda, Julian Parkhill, Bijaya Malla, Stefan Berg, Guy Thwaites,[...]. Nat Genet 2013
531
6

A high-coverage genome sequence from an archaic Denisovan individual.
Matthias Meyer, Martin Kircher, Marie-Theres Gansauge, Heng Li, Fernando Racimo, Swapan Mallick, Joshua G Schraiber, Flora Jay, Kay Prüfer, Cesare de Filippo,[...]. Science 2012
821
6

The variant call format and VCFtools.
Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A Albers, Eric Banks, Mark A DePristo, Robert E Handsaker, Gerton Lunter, Gabor T Marth, Stephen T Sherry,[...]. Bioinformatics 2011
6

Principal components analysis corrects for stratification in genome-wide association studies.
Alkes L Price, Nick J Patterson, Robert M Plenge, Michael E Weinblatt, Nancy A Shadick, David Reich. Nat Genet 2006
6

Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Luke Jostins, Stephan Ripke, Rinse K Weersma, Richard H Duerr, Dermot P McGovern, Ken Y Hui, James C Lee, L Philip Schumm, Yashoda Sharma, Carl A Anderson,[...]. Nature 2012
6

The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).
Jacqueline MacArthur, Emily Bowler, Maria Cerezo, Laurent Gil, Peggy Hall, Emma Hastings, Heather Junkins, Aoife McMahon, Annalisa Milano, Joannella Morales,[...]. Nucleic Acids Res 2017
6

Genome-wide association study indicates two novel resistance loci for severe malaria.
Christian Timmann, Thorsten Thye, Maren Vens, Jennifer Evans, Jürgen May, Christa Ehmen, Jürgen Sievertsen, Birgit Muntau, Gerd Ruge, Wibke Loag,[...]. Nature 2012
139
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.