A citation-based method for searching scientific literature

En Li, Yi Zhang. Cold Spring Harb Perspect Biol 2014
Times Cited: 472







List of co-cited articles
855 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The diverse roles of DNA methylation in mammalian development and disease.
Maxim V C Greenberg, Deborah Bourc'his. Nat Rev Mol Cell Biol 2019
653
20


DNA methylation: roles in mammalian development.
Zachary D Smith, Alexander Meissner. Nat Rev Genet 2013
16

DNA methylation and its basic function.
Lisa D Moore, Thuc Le, Guoping Fan. Neuropsychopharmacology 2013
14



Human DNA methylomes at base resolution show widespread epigenomic differences.
Ryan Lister, Mattia Pelizzola, Robert H Dowen, R David Hawkins, Gary Hon, Julian Tonti-Filippini, Joseph R Nery, Leonard Lee, Zhen Ye, Que-Minh Ngo,[...]. Nature 2009
11


Regulation of chromatin by histone modifications.
Andrew J Bannister, Tony Kouzarides. Cell Res 2011
10


Role of TET enzymes in DNA methylation, development, and cancer.
Kasper Dindler Rasmussen, Kristian Helin. Genes Dev 2016
530
10

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.
Mamta Tahiliani, Kian Peng Koh, Yinghua Shen, William A Pastor, Hozefa Bandukwala, Yevgeny Brudno, Suneet Agarwal, Lakshminarayan M Iyer, David R Liu, L Aravind,[...]. Science 2009
10


Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.
Shinsuke Ito, Li Shen, Qing Dai, Susan C Wu, Leonard B Collins, James A Swenberg, Chuan He, Yi Zhang. Science 2011
9


CpG islands and the regulation of transcription.
Aimée M Deaton, Adrian Bird. Genes Dev 2011
8

A bivalent chromatin structure marks key developmental genes in embryonic stem cells.
Bradley E Bernstein, Tarjei S Mikkelsen, Xiaohui Xie, Michael Kamal, Dana J Huebert, James Cuff, Ben Fry, Alex Meissner, Marius Wernig, Kathrin Plath,[...]. Cell 2006
8



Dynamic DNA methylation: In the right place at the right time.
Chongyuan Luo, Petra Hajkova, Joseph R Ecker. Science 2018
266
8

The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes.
Tian-Peng Gu, Fan Guo, Hui Yang, Hai-Ping Wu, Gui-Fang Xu, Wei Liu, Zhi-Guo Xie, Linyu Shi, Xinyi He, Seung-gi Jin,[...]. Nature 2011
777
7

Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting.
Masahiro Kaneda, Masaki Okano, Kenichiro Hata, Takashi Sado, Naomi Tsujimoto, En Li, Hiroyuki Sasaki. Nature 2004
926
7

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
7

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
7

Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation.
Tuncay Baubec, Daniele F Colombo, Christiane Wirbelauer, Juliane Schmidt, Lukas Burger, Arnaud R Krebs, Altuna Akalin, Dirk Schübeler. Nature 2015
394
6

The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA.
Jafar Sharif, Masahiro Muto, Shin-ichiro Takebayashi, Isao Suetake, Akihiro Iwamatsu, Takaho A Endo, Jun Shinga, Yoko Mizutani-Koseki, Tetsuro Toyoda, Kunihiro Okamura,[...]. Nature 2007
850
6

DNMT3A and TET1 cooperate to regulate promoter epigenetic landscapes in mouse embryonic stem cells.
Tianpeng Gu, Xueqiu Lin, Sean M Cullen, Min Luo, Mira Jeong, Marcos Estecio, Jianjun Shen, Swanand Hardikar, Deqiang Sun, Jianzhong Su,[...]. Genome Biol 2018
76
7


Genome-wide evolutionary analysis of eukaryotic DNA methylation.
Assaf Zemach, Ivy E McDaniel, Pedro Silva, Daniel Zilberman. Science 2010
6



Tet3 and DNA replication mediate demethylation of both the maternal and paternal genomes in mouse zygotes.
Li Shen, Azusa Inoue, Jin He, Yuting Liu, Falong Lu, Yi Zhang. Cell Stem Cell 2014
156
5


TET proteins safeguard bivalent promoters from de novo methylation in human embryonic stem cells.
Nipun Verma, Heng Pan, Louis C Doré, Abhijit Shukla, Qing V Li, Bobbie Pelham-Webb, Virginia Teijeiro, Federico González, Andrei Krivtsov, Chan-Jung Chang,[...]. Nat Genet 2018
114
5

Stella safeguards the oocyte methylome by preventing de novo methylation mediated by DNMT1.
Yingfeng Li, Zhuqiang Zhang, Jiayu Chen, Wenqiang Liu, Weiyi Lai, Baodong Liu, Xiang Li, Liping Liu, Shaohua Xu, Qiang Dong,[...]. Nature 2018
120
5

Lateral Thinking: How Histone Modifications Regulate Gene Expression.
Moyra Lawrence, Sylvain Daujat, Robert Schneider. Trends Genet 2016
391
5

5-Hydroxymethylcytosine is a predominantly stable DNA modification.
Martin Bachman, Santiago Uribe-Lewis, Xiaoping Yang, Michael Williams, Adele Murrell, Shankar Balasubramanian. Nat Chem 2014
318
5

Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.
Yu-Fei He, Bin-Zhong Li, Zheng Li, Peng Liu, Yang Wang, Qingyu Tang, Jianping Ding, Yingying Jia, Zhangcheng Chen, Lin Li,[...]. Science 2011
5

DNA demethylation pathways: Additional players and regulators.
Matthias Bochtler, Agnieszka Kolano, Guo-Liang Xu. Bioessays 2017
87
5


Reprogramming the methylome: erasing memory and creating diversity.
Heather J Lee, Timothy A Hore, Wolf Reik. Cell Stem Cell 2014
219
5


DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA.
Steen K T Ooi, Chen Qiu, Emily Bernstein, Keqin Li, Da Jia, Zhe Yang, Hediye Erdjument-Bromage, Paul Tempst, Shau-Ping Lin, C David Allis,[...]. Nature 2007
5

The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells.
Stefanie Seisenberger, Simon Andrews, Felix Krueger, Julia Arand, Jörn Walter, Fátima Santos, Christian Popp, Bernard Thienpont, Wendy Dean, Wolf Reik. Mol Cell 2012
612
5

Dynamic CpG island methylation landscape in oocytes and preimplantation embryos.
Sébastien A Smallwood, Shin-Ichi Tomizawa, Felix Krueger, Nico Ruf, Natasha Carli, Anne Segonds-Pichon, Shun Sato, Kenichiro Hata, Simon R Andrews, Gavin Kelsey. Nat Genet 2011
448
5

Cancer epigenetics: from mechanism to therapy.
Mark A Dawson, Tony Kouzarides. Cell 2012
5

Epigenetic Determinants of Cancer.
Stephen B Baylin, Peter A Jones. Cold Spring Harb Perspect Biol 2016
500
5

Structure and function of mammalian DNA methyltransferases.
Renata Zofia Jurkowska, Tomasz Piotr Jurkowski, Albert Jeltsch. Chembiochem 2011
435
5

The DNA methyltransferases of mammals.
T H Bestor. Hum Mol Genet 2000
5

Chromatin accessibility and the regulatory epigenome.
Sandy L Klemm, Zohar Shipony, William J Greenleaf. Nat Rev Genet 2019
511
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.