A citation-based method for searching scientific literature

Anna M Mleczko, Piotr Celichowski, Kamilla Bąkowska-Żywicka. Acta Biochim Pol 2014
Times Cited: 14







List of co-cited articles
76 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Angiogenin-induced tRNA fragments inhibit translation initiation.
Pavel Ivanov, Mohamed M Emara, Judit Villen, Steven P Gygi, Paul Anderson. Mol Cell 2011
527
42

Angiogenin cleaves tRNA and promotes stress-induced translational repression.
Satoshi Yamasaki, Pavel Ivanov, Guo-Fu Hu, Paul Anderson. J Cell Biol 2009
504
42

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).
Yong Sun Lee, Yoshiyuki Shibata, Ankit Malhotra, Anindya Dutta. Genes Dev 2009
622
42

Slicing tRNAs to boost functional ncRNA diversity.
Jennifer Gebetsberger, Norbert Polacek. RNA Biol 2013
151
42

tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma.
Roy L Maute, Christof Schneider, Pavel Sumazin, Antony Holmes, Andrea Califano, Katia Basso, Riccardo Dalla-Favera. Proc Natl Acad Sci U S A 2013
307
35

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs.
Christian Cole, Andrew Sobala, Cheng Lu, Shawn R Thatcher, Andrew Bowman, John W S Brown, Pamela J Green, Geoffrey J Barton, Gyorgy Hutvagner. RNA 2009
399
35

Angiogenin-cleaved tRNA halves interact with cytochrome c, protecting cells from apoptosis during osmotic stress.
Mridusmita Saikia, Raul Jobava, Marc Parisien, Andrea Putnam, Dawid Krokowski, Xing-Huang Gao, Bo-Jhih Guan, Yiyuan Yuan, Eckhard Jankowsky, Zhaoyang Feng,[...]. Mol Cell Biol 2014
145
35

Angiogenin-induced tRNA-derived stress-induced RNAs promote stress-induced stress granule assembly.
Mohamed M Emara, Pavel Ivanov, Tyler Hickman, Nemisha Dawra, Sarah Tisdale, Nancy Kedersha, Guo-Fu Hu, Paul Anderson. J Biol Chem 2010
298
35

Hidden layers of human small RNAs.
Hideya Kawaji, Mari Nakamura, Yukari Takahashi, Albin Sandelin, Shintaro Katayama, Shiro Fukuda, Carsten O Daub, Chikatoshi Kai, Jun Kawai, Jun Yasuda,[...]. BMC Genomics 2008
213
28

tRNA-derived fragments target the ribosome and function as regulatory non-coding RNA in Haloferax volcanii.
Jennifer Gebetsberger, Marek Zywicki, Andrea Künzi, Norbert Polacek. Archaea 2012
161
28

Human tRNA-derived small RNAs in the global regulation of RNA silencing.
Dirk Haussecker, Yong Huang, Ashley Lau, Poornima Parameswaran, Andrew Z Fire, Mark A Kay. RNA 2010
429
28

CLP1 founder mutation links tRNA splicing and maturation to cerebellar development and neurodegeneration.
Ashleigh E Schaffer, Veerle R C Eggens, Ahmet Okay Caglayan, Miriam S Reuter, Eric Scott, Nicole G Coufal, Jennifer L Silhavy, Yuanchao Xue, Hulya Kayserili, Katsuhito Yasuno,[...]. Cell 2014
142
28

Identification and functional characterization of tRNA-derived RNA fragments (tRFs) in respiratory syncytial virus infection.
Qingrong Wang, Inhan Lee, Junping Ren, Subramanian Shankar Ajay, Yong Sun Lee, Xiaoyong Bao. Mol Ther 2013
172
28

Genome-wide identification and quantitative analysis of cleaved tRNA fragments induced by cellular stress.
Mridusmita Saikia, Dawid Krokowski, Bo-Jhih Guan, Pavel Ivanov, Marc Parisien, Guo-fu Hu, Paul Anderson, Tao Pan, Maria Hatzoglou. J Biol Chem 2012
132
28


Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs.
Joshua E Babiarz, J Graham Ruby, Yangming Wang, David P Bartel, Robert Blelloch. Genes Dev 2008
568
28

A comprehensive repertoire of tRNA-derived fragments in prostate cancer.
Michael Olvedy, Mauro Scaravilli, Youri Hoogstrate, Tapio Visakorpi, Guido Jenster, Elena S Martens-Uzunova. Oncotarget 2016
88
28

tRNA biology charges to the front.
Eric M Phizicky, Anita K Hopper. Genes Dev 2010
500
21


Pyrosequencing of small non-coding RNAs in HIV-1 infected cells: evidence for the processing of a viral-cellular double-stranded RNA hybrid.
Man Lung Yeung, Yamina Bennasser, Koichi Watashi, Shu-Yun Le, Laurent Houzet, Kuan-Teh Jeang. Nucleic Acids Res 2009
155
21

Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs.
Zhihua Li, Christine Ender, Gunter Meister, Patrick S Moore, Yuan Chang, Bino John. Nucleic Acids Res 2012
185
21

GtRNAdb: a database of transfer RNA genes detected in genomic sequence.
Patricia P Chan, Todd M Lowe. Nucleic Acids Res 2009
573
21

tRNA binds to cytochrome c and inhibits caspase activation.
Yide Mei, Jeongsik Yong, Hongtu Liu, Yigong Shi, Judy Meinkoth, Gideon Dreyfuss, Xiaolu Yang. Mol Cell 2010
133
21

Stress induces tRNA cleavage by angiogenin in mammalian cells.
Hanjiang Fu, Junjun Feng, Qin Liu, Fang Sun, Yi Tie, Jie Zhu, Ruiyun Xing, Zhixian Sun, Xiaofei Zheng. FEBS Lett 2009
311
21

tRNA over-expression in breast cancer and functional consequences.
Mariana Pavon-Eternod, Suzanna Gomes, Renaud Geslain, Qing Dai, Marsha Rich Rosner, Tao Pan. Nucleic Acids Res 2009
193
21

Exosomes in human semen carry a distinctive repertoire of small non-coding RNAs with potential regulatory functions.
Lucia Vojtech, Sangsoon Woo, Sean Hughes, Claire Levy, Lamar Ballweber, Renan P Sauteraud, Johanna Strobl, Katharine Westerberg, Raphael Gottardo, Muneesh Tewari,[...]. Nucleic Acids Res 2014
309
21

Diagnostic and prognostic signatures from the small non-coding RNA transcriptome in prostate cancer.
E S Martens-Uzunova, S E Jalava, N F Dits, G J L H van Leenders, S Møller, J Trapman, C H Bangma, T Litman, T Visakorpi, G Jenster. Oncogene 2012
189
21

tRNA fragments in human health and disease.
Paul Anderson, Pavel Ivanov. FEBS Lett 2014
207
21

Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin.
Alexander Maxwell Burroughs, Yoshinari Ando, Michiel Jan Laurens de Hoon, Yasuhiro Tomaru, Harukazu Suzuki, Yoshihide Hayashizaki, Carsten Olivier Daub. RNA Biol 2011
192
21

tRFdb: a database for transfer RNA fragments.
Pankaj Kumar, Suresh B Mudunuri, Jordan Anaya, Anindya Dutta. Nucleic Acids Res 2015
120
21

Biogenesis and Function of Transfer RNA-Related Fragments (tRFs).
Pankaj Kumar, Canan Kuscu, Anindya Dutta. Trends Biochem Sci 2016
188
21

Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement.
Hani Goodarzi, Xuhang Liu, Hoang C B Nguyen, Steven Zhang, Lisa Fish, Sohail F Tavazoie. Cell 2015
353
21

tRF/miR-1280 Suppresses Stem Cell-like Cells and Metastasis in Colorectal Cancer.
Bingqing Huang, Huipeng Yang, Xixi Cheng, Dan Wang, Shuyu Fu, Wencui Shen, Qi Zhang, Lijuan Zhang, Zhenyi Xue, Yan Li,[...]. Cancer Res 2017
87
21

Modulated Expression of Specific tRNAs Drives Gene Expression and Cancer Progression.
Hani Goodarzi, Hoang C B Nguyen, Steven Zhang, Brian D Dill, Henrik Molina, Sohail F Tavazoie. Cell 2016
199
21

Beyond microRNA--novel RNAs derived from small non-coding RNA and their implication in cancer.
Elena S Martens-Uzunova, Michael Olvedy, Guido Jenster. Cancer Lett 2013
114
21

Stress granules.
Paul Anderson, Nancy Kedersha. Curr Biol 2009
192
14

Human CLP1 mutations alter tRNA biogenesis, affecting both peripheral and central nervous system function.
Ender Karaca, Stefan Weitzer, Davut Pehlivan, Hiroshi Shiraishi, Tasos Gogakos, Toshikatsu Hanada, Shalini N Jhangiani, Wojciech Wiszniewski, Marjorie Withers, Ian M Campbell,[...]. Cell 2014
123
14

5' tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction.
Joseph M Dhahbi, Stephen R Spindler, Hani Atamna, Amy Yamakawa, Dario Boffelli, Patricia Mote, David I K Martin. BMC Genomics 2013
137
14

Stressing out over tRNA cleavage.
Debrah M Thompson, Roy Parker. Cell 2009
268
14

Conformational change in transfer RNA is an early indicator of acute cellular damage.
Eikan Mishima, Chisako Inoue, Daisuke Saigusa, Ryusuke Inoue, Koki Ito, Yusuke Suzuki, Daisuke Jinno, Yuri Tsukui, Yosuke Akamatsu, Masatake Araki,[...]. J Am Soc Nephrol 2014
65
14

The eIF2α kinases: their structures and functions.
Neysan Donnelly, Adrienne M Gorman, Sanjeev Gupta, Afshin Samali. Cell Mol Life Sci 2013
451
14

The major mRNA-associated protein YB-1 is a potent 5' cap-dependent mRNA stabilizer.
V Evdokimova, P Ruzanov, H Imataka, B Raught, Y Svitkin, L P Ovchinnikov, N Sonenberg. EMBO J 2001
208
14

The mRNA-binding protein YB-1 (p50) prevents association of the eukaryotic initiation factor eIF4G with mRNA and inhibits protein synthesis at the initiation stage.
Maxim P Nekrasov, Maria P Ivshina, Konstantin G Chernov, Elizaveta A Kovrigina, Valentina M Evdokimova, Adri A M Thomas, John W B Hershey, Lev P Ovchinnikov. J Biol Chem 2003
102
14

Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers.
Jian-You Liao, Li-Ming Ma, Yan-Hua Guo, Yu-Chan Zhang, Hui Zhou, Peng Shao, Yue-Qin Chen, Liang-Hu Qu. PLoS One 2010
203
14

Stress granules and cell signaling: more than just a passing phase?
Nancy Kedersha, Pavel Ivanov, Paul Anderson. Trends Biochem Sci 2013
346
14

High turnover rate of transfer RNA in tumor tissue.
E Borek, B S Baliga, C W Gehrke, C W Kuo, S Belman, W Troll, T P Waalkes. Cancer Res 1977
188
14

A novel class of tRNA-derived small RNAs extremely enriched in mature mouse sperm.
Hongying Peng, Junchao Shi, Ying Zhang, He Zhang, Shangying Liao, Wei Li, Li Lei, Chunsheng Han, Lina Ning, Yujing Cao,[...]. Cell Res 2012
179
14


Transfer RNA-derived fragments: origins, processing, and functions.
Andrew Sobala, Gyorgy Hutvagner. Wiley Interdiscip Rev RNA 2011
132
14

The nuclear function of angiogenin in endothelial cells is related to rRNA production.
Zheng-ping Xu, Takanori Tsuji, James F Riordan, Guo-fu Hu. Biochem Biophys Res Commun 2002
90
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.