A citation-based method for searching scientific literature

Daniel J Gibbs, Jaume Bacardit, Andreas Bachmair, Michael J Holdsworth. Trends Cell Biol 2014
Times Cited: 134







List of co-cited articles
860 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The N-end rule pathway and regulation by proteolysis.
Alexander Varshavsky. Protein Sci 2011
456
52


The N-end rule pathway.
Takafumi Tasaki, Shashikanth M Sriram, Kyong Soo Park, Yong Tae Kwon. Annu Rev Biochem 2012
254
43

Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants.
Daniel J Gibbs, Seung Cho Lee, Nurulhikma Md Isa, Silvia Gramuglia, Takeshi Fukao, George W Bassel, Cristina Sousa Correia, Françoise Corbineau, Frederica L Theodoulou, Julia Bailey-Serres,[...]. Nature 2011
384
38

N-terminal acetylation of cellular proteins creates specific degradation signals.
Cheol-Sang Hwang, Anna Shemorry, Alexander Varshavsky. Science 2010
442
37

Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway.
Daan A Weits, Beatrice Giuntoli, Monika Kosmacz, Sandro Parlanti, Hans-Michael Hubberten, Heike Riegler, Rainer Hoefgen, Pierdomenico Perata, Joost T van Dongen, Francesco Licausi. Nat Commun 2014
190
33

Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization.
Francesco Licausi, Monika Kosmacz, Daan A Weits, Beatrice Giuntoli, Federico M Giorgi, Laurentius A C J Voesenek, Pierdomenico Perata, Joost T van Dongen. Nature 2011
404
32

Nitric oxide sensing in plants is mediated by proteolytic control of group VII ERF transcription factors.
Daniel J Gibbs, Nurulhikma Md Isa, Mahsa Movahedi, Jorge Lozano-Juste, Guillermina M Mendiondo, Sophie Berckhan, Nora Marín-de la Rosa, Jorge Vicente Conde, Cristina Sousa Correia, Simon P Pearce,[...]. Mol Cell 2014
217
31

An N-end rule pathway that recognizes proline and destroys gluconeogenic enzymes.
Shun-Jia Chen, Xia Wu, Brandon Wadas, Jang-Hyun Oh, Alexander Varshavsky. Science 2017
112
31

The Cys-Arg/N-End Rule Pathway Is a General Sensor of Abiotic Stress in Flowering Plants.
Jorge Vicente, Guillermina M Mendiondo, Mahsa Movahedi, Marta Peirats-Llobet, Yu-Ting Juan, Yu-Yen Shen, Charlene Dambire, Katherine Smart, Pedro L Rodriguez, Yee-Yung Charng,[...]. Curr Biol 2017
74
39

The N-end rule pathway as a nitric oxide sensor controlling the levels of multiple regulators.
Rong-Gui Hu, Jun Sheng, Xin Qi, Zhenming Xu, Terry T Takahashi, Alexander Varshavsky. Nature 2005
226
28

The N-terminal methionine of cellular proteins as a degradation signal.
Heon-Ki Kim, Ryu-Ryun Kim, Jang-Hyun Oh, Hanna Cho, Alexander Varshavsky, Cheol-Sang Hwang. Cell 2014
121
28

Control of protein quality and stoichiometries by N-terminal acetylation and the N-end rule pathway.
Anna Shemorry, Cheol-Sang Hwang, Alexander Varshavsky. Mol Cell 2013
200
27


N-degron and C-degron pathways of protein degradation.
Alexander Varshavsky. Proc Natl Acad Sci U S A 2019
221
25

The N-end rule pathway counteracts cell death by destroying proapoptotic protein fragments.
Konstantin I Piatkov, Christopher S Brower, Alexander Varshavsky. Proc Natl Acad Sci U S A 2012
102
23

First Things First: Vital Protein Marks by N-Terminal Acetyltransferases.
Henriette Aksnes, Adrian Drazic, Michaël Marie, Thomas Arnesen. Trends Biochem Sci 2016
142
21

The N-end rule pathway controls multiple functions during Arabidopsis shoot and leaf development.
Emmanuelle Graciet, Franziska Walter, Diarmuid S Ó'Maoiléidigh, Stephan Pollmann, Elliot M Meyerowitz, Alexander Varshavsky, Frank Wellmer. Proc Natl Acad Sci U S A 2009
88
22

The N-end rule pathway: from recognition by N-recognins, to destruction by AAA+proteases.
D A Dougan, D Micevski, K N Truscott. Biochim Biophys Acta 2012
85
23

Plant cysteine oxidases are dioxygenases that directly enable arginyl transferase-catalysed arginylation of N-end rule targets.
Mark D White, Maria Klecker, Richard J Hopkinson, Daan A Weits, Carolin Mueller, Christin Naumann, Rebecca O'Neill, James Wickens, Jiayu Yang, Jonathan C Brooks-Bartlett,[...]. Nat Commun 2017
107
20

Control of mammalian G protein signaling by N-terminal acetylation and the N-end rule pathway.
Sang-Eun Park, Jeong-Mok Kim, Ok-Hee Seok, Hanna Cho, Brandon Wadas, Seon-Young Kim, Alexander Varshavsky, Cheol-Sang Hwang. Science 2015
95
20

Oxygen sensing coordinates photomorphogenesis to facilitate seedling survival.
Mohamad Abbas, Sophie Berckhan, Daniel J Rooney, Daniel J Gibbs, Jorge Vicente Conde, Cristina Sousa Correia, George W Bassel, Nora Marín-de la Rosa, José León, David Alabadí,[...]. Curr Biol 2015
95
18

The N-end rule pathway promotes seed germination and establishment through removal of ABA sensitivity in Arabidopsis.
Tara J Holman, Peter D Jones, Laurel Russell, Anne Medhurst, Susana Ubeda Tomás, Prabhavathi Talloji, Julietta Marquez, Heike Schmuths, Swee-Ang Tung, Ian Taylor,[...]. Proc Natl Acad Sci U S A 2009
120
17

PRT6/At5g02310 encodes an Arabidopsis ubiquitin ligase of the N-end rule pathway with arginine specificity and is not the CER3 locus.
Marcus Garzón, Karolin Eifler, Andrea Faust, Hartmut Scheel, Kay Hofmann, Csaba Koncz, Alexander Yephremov, Andreas Bachmair. FEBS Lett 2007
73
23

An essential role of N-terminal arginylation in cardiovascular development.
Yong Tae Kwon, Anna S Kashina, Ilia V Davydov, Rong-Gui Hu, Jee Young An, Jai Wha Seo, Fangyong Du, Alexander Varshavsky. Science 2002
248
17

Enhanced waterlogging tolerance in barley by manipulation of expression of the N-end rule pathway E3 ligase PROTEOLYSIS6.
Guillermina M Mendiondo, Daniel J Gibbs, Miriam Szurman-Zubrzycka, Arnd Korn, Julietta Marquez, Iwona Szarejko, Miroslaw Maluszynski, John King, Barry Axcell, Katherine Smart,[...]. Plant Biotechnol J 2016
68
25

Group VII Ethylene Response Factors Coordinate Oxygen and Nitric Oxide Signal Transduction and Stress Responses in Plants.
Daniel J Gibbs, Jorge Vicente Conde, Sophie Berckhan, Geeta Prasad, Guillermina M Mendiondo, Michael J Holdsworth. Plant Physiol 2015
105
17

Neurodegeneration-associated protein fragments as short-lived substrates of the N-end rule pathway.
Christopher S Brower, Konstantin I Piatkov, Alexander Varshavsky. Mol Cell 2013
79
21

From start to finish: amino-terminal protein modifications as degradation signals in plants.
Daniel J Gibbs, Mark Bailey, Hannah M Tedds, Michael J Holdsworth. New Phytol 2016
42
40

Amino-terminal arginylation targets endoplasmic reticulum chaperone BiP for autophagy through p62 binding.
Hyunjoo Cha-Molstad, Ki Sa Sung, Joonsung Hwang, Kyoung A Kim, Ji Eun Yu, Young Dong Yoo, Jun Min Jang, Dong Hoon Han, Michael Molstad, Jung Gi Kim,[...]. Nat Cell Biol 2015
143
16

The N-end rule pathway regulates pathogen responses in plants.
Rémi de Marchi, Maud Sorel, Brian Mooney, Isabelle Fudal, Kevin Goslin, Kamila Kwaśniewska, Patrick T Ryan, Marina Pfalz, Juergen Kroymann, Stephan Pollmann,[...]. Sci Rep 2016
29
55

RGS4 and RGS5 are in vivo substrates of the N-end rule pathway.
Min Jae Lee, Takafumi Tasaki, Kayoko Moroi, Jee Young An, Sadao Kimura, Ilia V Davydov, Yong Tae Kwon. Proc Natl Acad Sci U S A 2005
186
15

Two N-terminal acetyltransferases antagonistically regulate the stability of a nod-like receptor in Arabidopsis.
Fang Xu, Yan Huang, Lin Li, Patrick Gannon, Eric Linster, Monika Huber, Paul Kapos, Willy Bienvenut, Bogdan Polevoda, Thierry Meinnel,[...]. Plant Cell 2015
80
18

Structure and evolutionary conservation of the plant N-end rule pathway.
Emmanuelle Graciet, Francesca Mesiti, Frank Wellmer. Plant J 2010
51
27

Downregulation of N-terminal acetylation triggers ABA-mediated drought responses in Arabidopsis.
Eric Linster, Iwona Stephan, Willy V Bienvenut, Jodi Maple-Grødem, Line M Myklebust, Monika Huber, Michael Reichelt, Carsten Sticht, Simon Geir Møller, Thierry Meinnel,[...]. Nat Commun 2015
86
16

Structural basis for the recognition of N-end rule substrates by the UBR box of ubiquitin ligases.
Woo Suk Choi, Byung-Cheon Jeong, Yoo Jin Joo, Myeong-Ryeol Lee, Joon Kim, Michael J Eck, Hyun Kyu Song. Nat Struct Mol Biol 2010
101
14

Oxygen-dependent proteolysis regulates the stability of angiosperm polycomb repressive complex 2 subunit VERNALIZATION 2.
Daniel J Gibbs, Hannah M Tedds, Anne-Marie Labandera, Mark Bailey, Mark D White, Sjon Hartman, Colleen Sprigg, Sophie L Mogg, Rory Osborne, Charlene Dambire,[...]. Nat Commun 2018
56
25

The degradation signal in a short-lived protein.
A Bachmair, A Varshavsky. Cell 1989
358
13

Calpain-generated natural protein fragments as short-lived substrates of the N-end rule pathway.
Konstantin I Piatkov, Jang-Hyun Oh, Yuan Liu, Alexander Varshavsky. Proc Natl Acad Sci U S A 2014
61
21

The N-end rule pathway is mediated by a complex of the RING-type Ubr1 and HECT-type Ufd4 ubiquitin ligases.
Cheol-Sang Hwang, Anna Shemorry, Daniel Auerbach, Alexander Varshavsky. Nat Cell Biol 2010
102
13

Analyzing N-terminal Arginylation through the Use of Peptide Arrays and Degradation Assays.
Brandon Wadas, Konstantin I Piatkov, Christopher S Brower, Alexander Varshavsky. J Biol Chem 2016
20
65

The ubiquitin-proteasome system of Saccharomyces cerevisiae.
Daniel Finley, Helle D Ulrich, Thomas Sommer, Peter Kaiser. Genetics 2012
265
13

Distinct branches of the N-end rule pathway modulate the plant immune response.
Jorge Vicente, Guillermina M Mendiondo, Jarne Pauwels, Victoria Pastor, Yovanny Izquierdo, Christin Naumann, Mahsa Movahedi, Daniel Rooney, Daniel J Gibbs, Katherine Smart,[...]. New Phytol 2019
44
29

Making sense of low oxygen sensing.
Julia Bailey-Serres, Takeshi Fukao, Daniel J Gibbs, Michael J Holdsworth, Seung Cho Lee, Francesco Licausi, Pierdomenico Perata, Laurentius A C J Voesenek, Joost T van Dongen. Trends Plant Sci 2012
255
12


The auto-generated fragment of the Usp1 deubiquitylase is a physiological substrate of the N-end rule pathway.
Konstantin I Piatkov, Luca Colnaghi, Miklos Békés, Alexander Varshavsky, Tony T Huang. Mol Cell 2012
51
23

Structural basis of substrate recognition and specificity in the N-end rule pathway.
Edna Matta-Camacho, Guennadi Kozlov, Flora F Li, Kalle Gehring. Nat Struct Mol Biol 2010
75
16

Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
Philipp Gasch, Moritz Fundinger, Jana T Müller, Travis Lee, Julia Bailey-Serres, Angelika Mustroph. Plant Cell 2016
134
12

Formyl-methionine as an N-degron of a eukaryotic N-end rule pathway.
Jeong-Mok Kim, Ok-Hee Seok, Shinyeong Ju, Ji-Eun Heo, Jeonghun Yeom, Da-Som Kim, Joo-Yeon Yoo, Alexander Varshavsky, Cheolju Lee, Cheol-Sang Hwang. Science 2018
48
25

N-terminal protein modifications: Bringing back into play the ribosome.
Carmela Giglione, Sonia Fieulaine, Thierry Meinnel. Biochimie 2015
105
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.