A citation-based method for searching scientific literature

Marina K Ayrapetov, Ozge Gursoy-Yuzugullu, Chang Xu, Ye Xu, Brendan D Price. Proc Natl Acad Sci U S A 2014
Times Cited: 212







List of co-cited articles
1401 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Histone H3 methylation links DNA damage detection to activation of the tumour suppressor Tip60.
Yingli Sun, Xiaofeng Jiang, Ye Xu, Marina K Ayrapetov, Lisa A Moreau, Johnathan R Whetstine, Brendan D Price. Nat Cell Biol 2009
306
30

Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination.
Jiangbo Tang, Nam Woo Cho, Gaofeng Cui, Erica M Manion, Niraj M Shanbhag, Maria Victoria Botuyan, Georges Mer, Roger A Greenberg. Nat Struct Mol Biol 2013
327
24

Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks.
François Aymard, Beatrix Bugler, Christine K Schmidt, Emmanuelle Guillou, Pierre Caron, Sébastien Briois, Jason S Iacovoni, Virginie Daburon, Kyle M Miller, Stephen P Jackson,[...]. Nat Struct Mol Biol 2014
365
23

ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks.
Niraj M Shanbhag, Ilona U Rafalska-Metcalf, Carlo Balane-Bolivar, Susan M Janicki, Roger A Greenberg. Cell 2010
481
22

A macrohistone variant links dynamic chromatin compaction to BRCA1-dependent genome maintenance.
Simran Khurana, Michael J Kruhlak, Jeongkyu Kim, Andy D Tran, Jinping Liu, Katherine Nyswaner, Lei Shi, Parthav Jailwala, Myong-Hee Sung, Ofir Hakim,[...]. Cell Rep 2014
137
20

The DNA damage response: making it safe to play with knives.
Alberto Ciccia, Stephen J Elledge. Mol Cell 2010
20

A chromatin localization screen reveals poly (ADP ribose)-regulated recruitment of the repressive polycomb and NuRD complexes to sites of DNA damage.
Danny M Chou, Britt Adamson, Noah E Dephoure, Xu Tan, Amanda C Nottke, Kristen E Hurov, Steven P Gygi, Monica P Colaiácovo, Stephen J Elledge. Proc Natl Acad Sci U S A 2010
381
20

53BP1 is a reader of the DNA-damage-induced H2A Lys 15 ubiquitin mark.
Amélie Fradet-Turcotte, Marella D Canny, Cristina Escribano-Díaz, Alexandre Orthwein, Charles C Y Leung, Hao Huang, Marie-Claude Landry, Julianne Kitevski-LeBlanc, Sylvie M Noordermeer, Frank Sicheri,[...]. Nature 2013
432
19

Histone demethylase KDM5A regulates the ZMYND8-NuRD chromatin remodeler to promote DNA repair.
Fade Gong, Thomas Clouaire, Marion Aguirrebengoa, Gaëlle Legube, Kyle M Miller. J Cell Biol 2017
83
22

Comprehensive Mapping of Histone Modifications at DNA Double-Strand Breaks Deciphers Repair Pathway Chromatin Signatures.
Thomas Clouaire, Vincent Rocher, Anahita Lashgari, Coline Arnould, Marion Aguirrebengoa, Anna Biernacka, Magdalena Skrzypczak, François Aymard, Bernard Fongang, Norbert Dojer,[...]. Mol Cell 2018
111
19

ATM signaling facilitates repair of DNA double-strand breaks associated with heterochromatin.
Aaron A Goodarzi, Angela T Noon, Dorothee Deckbar, Yael Ziv, Yosef Shiloh, Markus Löbrich, Penny A Jeggo. Mol Cell 2008
642
18


The TIP60 Complex Regulates Bivalent Chromatin Recognition by 53BP1 through Direct H4K20me Binding and H2AK15 Acetylation.
Karine Jacquet, Amélie Fradet-Turcotte, Nikita Avvakumov, Jean-Philippe Lambert, Céline Roques, Raj K Pandita, Eric Paquet, Pauline Herst, Anne-Claude Gingras, Tej K Pandita,[...]. Mol Cell 2016
127
16

SETDB1, HP1 and SUV39 promote repositioning of 53BP1 to extend resection during homologous recombination in G2 cells.
Meryem Alagoz, Yoko Katsuki, Hideaki Ogiwara, Tomoo Ogi, Atsushi Shibata, Andreas Kakarougkas, Penny Jeggo. Nucleic Acids Res 2015
50
32

SETD2-dependent histone H3K36 trimethylation is required for homologous recombination repair and genome stability.
Sophia X Pfister, Sara Ahrabi, Lykourgos-Panagiotis Zalmas, Sovan Sarkar, François Aymard, Csanád Z Bachrati, Thomas Helleday, Gaëlle Legube, Nicholas B La Thangue, Andrew C G Porter,[...]. Cell Rep 2014
260
15

The DNA-damage response in human biology and disease.
Stephen P Jackson, Jiri Bartek. Nature 2009
15

RNF168 ubiquitinates K13-15 on H2A/H2AX to drive DNA damage signaling.
Francesca Mattiroli, Joseph H A Vissers, Willem J van Dijk, Pauline Ikpa, Elisabetta Citterio, Wim Vermeulen, Jurgen A Marteijn, Titia K Sixma. Cell 2012
401
15

Methylation of histone H3 lysine 36 enhances DNA repair by nonhomologous end-joining.
Sheema Fnu, Elizabeth A Williamson, Leyma P De Haro, Mark Brenneman, Justin Wray, Montaser Shaheen, Krishnan Radhakrishnan, Suk-Hee Lee, Jac A Nickoloff, Robert Hromas. Proc Natl Acad Sci U S A 2011
178
15

A role for the Tip60 histone acetyltransferase in the acetylation and activation of ATM.
Yingli Sun, Xiaofeng Jiang, Shujuan Chen, Norvin Fernandes, Brendan D Price. Proc Natl Acad Sci U S A 2005
504
15

Interaction of BARD1 and HP1 Is Required for BRCA1 Retention at Sites of DNA Damage.
Wenwen Wu, Hiroyuki Nishikawa, Takayo Fukuda, Vinayak Vittal, Masahide Asano, Yasuo Miyoshi, Rachel E Klevit, Tomohiko Ohta. Cancer Res 2015
64
21

Human HDAC1 and HDAC2 function in the DNA-damage response to promote DNA nonhomologous end-joining.
Kyle M Miller, Jorrit V Tjeertes, Julia Coates, Gaëlle Legube, Sophie E Polo, Sébastien Britton, Stephen P Jackson. Nat Struct Mol Biol 2010
426
14

PARP1-dependent recruitment of KDM4D histone demethylase to DNA damage sites promotes double-strand break repair.
Hanan Khoury-Haddad, Noga Guttmann-Raviv, Inbal Ipenberg, David Huggins, Anand D Jeyasekharan, Nabieh Ayoub. Proc Natl Acad Sci U S A 2014
82
17

Orchestration of the DNA-damage response by the RNF8 ubiquitin ligase.
Nadine K Kolas, J Ross Chapman, Shinichiro Nakada, Jarkko Ylanko, Richard Chahwan, Frédéric D Sweeney, Stephanie Panier, Megan Mendez, Jan Wildenhain, Timothy M Thomson,[...]. Science 2007
672
14


DNAPKcs-dependent arrest of RNA polymerase II transcription in the presence of DNA breaks.
Tibor Pankotai, Céline Bonhomme, David Chen, Evi Soutoglou. Nat Struct Mol Biol 2012
152
14

RNF168 binds and amplifies ubiquitin conjugates on damaged chromosomes to allow accumulation of repair proteins.
Carsten Doil, Niels Mailand, Simon Bekker-Jensen, Patrice Menard, Dorthe Helena Larsen, Rainer Pepperkok, Jan Ellenberg, Stephanie Panier, Daniel Durocher, Jiri Bartek,[...]. Cell 2009
653
13

Requirement for PBAF in transcriptional repression and repair at DNA breaks in actively transcribed regions of chromatin.
Andreas Kakarougkas, Amani Ismail, Anna L Chambers, Enriqueta Riballo, Alex D Herbert, Julia Künzel, Markus Löbrich, Penny A Jeggo, Jessica A Downs. Mol Cell 2014
175
13

DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139.
E P Rogakou, D R Pilch, A H Orr, V S Ivanova, W M Bonner. J Biol Chem 1998
13


Histone H2A.Z controls a critical chromatin remodeling step required for DNA double-strand break repair.
Ye Xu, Marina K Ayrapetov, Chang Xu, Ozge Gursoy-Yuzugullu, Yiduo Hu, Brendan D Price. Mol Cell 2012
200
13

LEDGF (p75) promotes DNA-end resection and homologous recombination.
Mads Daugaard, Annika Baude, Kasper Fugger, Lou Klitgaard Povlsen, Halfdan Beck, Claus Storgaard Sørensen, Nikolaj H T Petersen, Poul H B Sorensen, Claudia Lukas, Jiri Bartek,[...]. Nat Struct Mol Biol 2012
122
13

Temporal and Spatial Uncoupling of DNA Double Strand Break Repair Pathways within Mammalian Heterochromatin.
Katerina Tsouroula, Audrey Furst, Melanie Rogier, Vincent Heyer, Anne Maglott-Roth, Alexia Ferrand, Bernardo Reina-San-Martin, Evi Soutoglou. Mol Cell 2016
138
13

Screen identifies bromodomain protein ZMYND8 in chromatin recognition of transcription-associated DNA damage that promotes homologous recombination.
Fade Gong, Li-Ya Chiu, Ben Cox, François Aymard, Thomas Clouaire, Justin W Leung, Michael Cammarata, Mercedes Perez, Poonam Agarwal, Jennifer S Brodbelt,[...]. Genes Dev 2015
144
13

Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain.
A J Bannister, P Zegerman, J F Partridge, E A Miska, J O Thomas, R C Allshire, T Kouzarides. Nature 2001
12

Chromatin relaxation in response to DNA double-strand breaks is modulated by a novel ATM- and KAP-1 dependent pathway.
Yael Ziv, Dana Bielopolski, Yaron Galanty, Claudia Lukas, Yoichi Taya, David C Schultz, Jiri Lukas, Simon Bekker-Jensen, Jiri Bartek, Yosef Shiloh. Nat Cell Biol 2006
531
12

Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair.
Maria Victoria Botuyan, Joseph Lee, Irene M Ward, Ja-Eun Kim, James R Thompson, Junjie Chen, Georges Mer. Cell 2006
705
12

Histone H1 couples initiation and amplification of ubiquitin signalling after DNA damage.
Tina Thorslund, Anita Ripplinger, Saskia Hoffmann, Thomas Wild, Michael Uckelmann, Bine Villumsen, Takeo Narita, Titia K Sixma, Chunaram Choudhary, Simon Bekker-Jensen,[...]. Nature 2015
229
12

HP1alpha recruitment to DNA damage by p150CAF-1 promotes homologous recombination repair.
Céline Baldeyron, Gaston Soria, Danièle Roche, Adam J L Cook, Geneviève Almouzni. J Cell Biol 2011
143
12

Activation of DNA damage response signaling by condensed chromatin.
Rebecca C Burgess, Bharat Burman, Michael J Kruhlak, Tom Misteli. Cell Rep 2014
114
12

Polycomb repressive complex 2 contributes to DNA double-strand break repair.
Stuart Campbell, Ismail Hassan Ismail, Leah C Young, Guy G Poirier, Michael J Hendzel. Cell Cycle 2013
91
13

Histone demethylase KDM5B is a key regulator of genome stability.
Xin Li, Ling Liu, Shangda Yang, Nan Song, Xing Zhou, Jie Gao, Na Yu, Lin Shan, Qian Wang, Jing Liang,[...]. Proc Natl Acad Sci U S A 2014
79
13

MMSET regulates histone H4K20 methylation and 53BP1 accumulation at DNA damage sites.
Huadong Pei, Lindsey Zhang, Kuntian Luo, Yuxin Qin, Marta Chesi, Frances Fei, P Leif Bergsagel, Liewei Wang, Zhongsheng You, Zhenkun Lou. Nature 2011
300
11


53BP1 regulates DSB repair using Rif1 to control 5' end resection.
Michal Zimmermann, Francisca Lottersberger, Sara B Buonomo, Agnel Sfeir, Titia de Lange. Science 2013
398
11

RNF8- and RNF168-dependent degradation of KDM4A/JMJD2A triggers 53BP1 recruitment to DNA damage sites.
Frédérick A Mallette, Francesca Mattiroli, Gaofeng Cui, Leah C Young, Michael J Hendzel, Georges Mer, Titia K Sixma, Stéphane Richard. EMBO J 2012
238
11

PARP1 Links CHD2-Mediated Chromatin Expansion and H3.3 Deposition to DNA Repair by Non-homologous End-Joining.
Martijn S Luijsterburg, Inge de Krijger, Wouter W Wiegant, Rashmi G Shah, Godelieve Smeenk, Anton J L de Groot, Alex Pines, Alfred C O Vertegaal, Jacqueline J L Jacobs, Girish M Shah,[...]. Mol Cell 2016
152
11

Double-strand break repair: 53BP1 comes into focus.
Stephanie Panier, Simon J Boulton. Nat Rev Mol Cell Biol 2014
617
11

CDYL1 fosters double-strand break-induced transcription silencing and promotes homology-directed repair.
Enas R Abu-Zhayia, Samah W Awwad, Bella M Ben-Oz, Hanan Khoury-Haddad, Nabieh Ayoub. J Mol Cell Biol 2018
26
42

SIRT7 promotes genome integrity and modulates non-homologous end joining DNA repair.
Berta N Vazquez, Joshua K Thackray, Nicolas G Simonet, Noriko Kane-Goldsmith, Paloma Martinez-Redondo, Trang Nguyen, Samuel Bunting, Alejandro Vaquero, Jay A Tischfield, Lourdes Serrano. EMBO J 2016
136
11

Prime, repair, restore: the active role of chromatin in the DNA damage response.
Gaston Soria, Sophie E Polo, Geneviève Almouzni. Mol Cell 2012
242
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.