A citation-based method for searching scientific literature

Daniel R Hochbaum, Yongxin Zhao, Samouil L Farhi, Nathan Klapoetke, Christopher A Werley, Vikrant Kapoor, Peng Zou, Joel M Kralj, Dougal Maclaurin, Niklas Smedemark-Margulies, Jessica L Saulnier, Gabriella L Boulting, Christoph Straub, Yong Ku Cho, Michael Melkonian, Gane Ka-Shu Wong, D Jed Harrison, Venkatesh N Murthy, Bernardo L Sabatini, Edward S Boyden, Robert E Campbell, Adam E Cohen. Nat Methods 2014
Times Cited: 405







List of co-cited articles
1033 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


High-speed recording of neural spikes in awake mice and flies with a fluorescent voltage sensor.
Yiyang Gong, Cheng Huang, Jin Zhong Li, Benjamin F Grewe, Yanping Zhang, Stephan Eismann, Mark J Schnitzer. Science 2015
243
30

Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
28

A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters.
Kiryl D Piatkevich, Erica E Jung, Christoph Straub, Changyang Linghu, Demian Park, Ho-Jun Suk, Daniel R Hochbaum, Daniel Goodwin, Eftychios Pnevmatikakis, Nikita Pak,[...]. Nat Chem Biol 2018
145
27

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.
Ahmed S Abdelfattah, Takashi Kawashima, Amrita Singh, Ondrej Novak, Hui Liu, Yichun Shuai, Yi-Chieh Huang, Luke Campagnola, Stephanie C Seeman, Jianing Yu,[...]. Science 2019
163
24

Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics.
Yoav Adam, Jeong J Kim, Shan Lou, Yongxin Zhao, Michael E Xie, Daan Brinks, Hao Wu, Mohammed A Mostajo-Radji, Simon Kheifets, Vicente Parot,[...]. Nature 2019
119
24

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
23

Ultrafast Two-Photon Imaging of a High-Gain Voltage Indicator in Awake Behaving Mice.
Vincent Villette, Mariya Chavarha, Ivan K Dimov, Jonathan Bradley, Lagnajeet Pradhan, Benjamin Mathieu, Stephen W Evans, Simon Chamberland, Dongqing Shi, Renzhi Yang,[...]. Cell 2019
100
23

Single action potentials and subthreshold electrical events imaged in neurons with a fluorescent protein voltage probe.
Lei Jin, Zhou Han, Jelena Platisa, Julian R A Wooltorton, Lawrence B Cohen, Vincent A Pieribone. Neuron 2012
290
22

Population imaging of neural activity in awake behaving mice.
Kiryl D Piatkevich, Seth Bensussen, Hua-An Tseng, Sanaya N Shroff, Violeta Gisselle Lopez-Huerta, Demian Park, Erica E Jung, Or A Shemesh, Christoph Straub, Howard J Gritton,[...]. Nature 2019
86
24

High-fidelity optical reporting of neuronal electrical activity with an ultrafast fluorescent voltage sensor.
François St-Pierre, Jesse D Marshall, Ying Yang, Yiyang Gong, Mark J Schnitzer, Michael Z Lin. Nat Neurosci 2014
262
20

Independent optical excitation of distinct neural populations.
Nathan C Klapoetke, Yasunobu Murata, Sung Soo Kim, Stefan R Pulver, Amanda Birdsey-Benson, Yong Ku Cho, Tania K Morimoto, Amy S Chuong, Eric J Carpenter, Zhijian Tian,[...]. Nat Methods 2014
964
20

Channelrhodopsin-2, a directly light-gated cation-selective membrane channel.
Georg Nagel, Tanjef Szellas, Wolfram Huhn, Suneel Kateriya, Nona Adeishvili, Peter Berthold, Doris Ollig, Peter Hegemann, Ernst Bamberg. Proc Natl Acad Sci U S A 2003
19

Genetically encoded indicators of neuronal activity.
Michael Z Lin, Mark J Schnitzer. Nat Neurosci 2016
312
19

Optical recording of action potentials in mammalian neurons using a microbial rhodopsin.
Joel M Kralj, Adam D Douglass, Daniel R Hochbaum, Dougal Maclaurin, Adam E Cohen. Nat Methods 2011
278
18

All-Optical Electrophysiology Reveals the Role of Lateral Inhibition in Sensory Processing in Cortical Layer 1.
Linlin Z Fan, Simon Kheifets, Urs L Böhm, Hao Wu, Kiryl D Piatkevich, Michael E Xie, Vicente Parot, Yooree Ha, Kathryn E Evans, Edward S Boyden,[...]. Cell 2020
47
34

Fast, in vivo voltage imaging using a red fluorescent indicator.
Madhuvanthi Kannan, Ganesh Vasan, Cheng Huang, Simon Haziza, Jin Zhong Li, Hakan Inan, Mark J Schnitzer, Vincent A Pieribone. Nat Methods 2018
60
25

Bright and fast multicoloured voltage reporters via electrochromic FRET.
Peng Zou, Yongxin Zhao, Adam D Douglass, Daniel R Hochbaum, Daan Brinks, Christopher A Werley, D Jed Harrison, Robert E Campbell, Adam E Cohen. Nat Commun 2014
117
15

A Photostable Silicon Rhodamine Platform for Optical Voltage Sensing.
Yi-Lin Huang, Alison S Walker, Evan W Miller. J Am Chem Soc 2015
98
14

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
421
14

An expanded palette of genetically encoded Ca²⁺ indicators.
Yongxin Zhao, Satoko Araki, Jiahui Wu, Takayuki Teramoto, Yu-Fen Chang, Masahiro Nakano, Ahmed S Abdelfattah, Manabi Fujiwara, Takeshi Ishihara, Takeharu Nagai,[...]. Science 2011
813
14

ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation.
John Y Lin, Per Magne Knutsen, Arnaud Muller, David Kleinfeld, Roger Y Tsien. Nat Neurosci 2013
442
14

Channelrhodopsin-1: a light-gated proton channel in green algae.
Georg Nagel, Doris Ollig, Markus Fuhrmann, Suneel Kateriya, Anna Maria Musti, Ernst Bamberg, Peter Hegemann. Science 2002
630
14

High-performance genetically targetable optical neural silencing by light-driven proton pumps.
Brian Y Chow, Xue Han, Allison S Dobry, Xiaofeng Qian, Amy S Chuong, Mingjie Li, Michael A Henninger, Gabriel M Belfort, Yingxi Lin, Patrick E Monahan,[...]. Nature 2010
738
14

Imaging neural spiking in brain tissue using FRET-opsin protein voltage sensors.
Yiyang Gong, Mark J Wagner, Jin Zhong Li, Mark J Schnitzer. Nat Commun 2014
131
14


Fast two-photon imaging of subcellular voltage dynamics in neuronal tissue with genetically encoded indicators.
Simon Chamberland, Helen H Yang, Michael M Pan, Stephen W Evans, Sihui Guan, Mariya Chavarha, Ying Yang, Charleen Salesse, Haodi Wu, Joseph C Wu,[...]. Elife 2017
89
13

Archaerhodopsin variants with enhanced voltage-sensitive fluorescence in mammalian and Caenorhabditis elegans neurons.
Nicholas C Flytzanis, Claire N Bedbrook, Hui Chiu, Martin K M Engqvist, Cheng Xiao, Ken Y Chan, Paul W Sternberg, Frances H Arnold, Viviana Gradinaru. Nat Commun 2014
85
14

Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses.
Georg Nagel, Martin Brauner, Jana F Liewald, Nona Adeishvili, Ernst Bamberg, Alexander Gottschalk. Curr Biol 2005
593
12

Neocortical excitation/inhibition balance in information processing and social dysfunction.
Ofer Yizhar, Lief E Fenno, Matthias Prigge, Franziska Schneider, Thomas J Davidson, Daniel J O'Shea, Vikaas S Sohal, Inbal Goshen, Joel Finkelstein, Jeanne T Paz,[...]. Nature 2011
12

Voltage imaging with genetically encoded indicators.
Yongxian Xu, Peng Zou, Adam E Cohen. Curr Opin Chem Biol 2017
86
12

Cortical layer-specific critical dynamics triggering perception.
James H Marshel, Yoon Seok Kim, Timothy A Machado, Sean Quirin, Brandon Benson, Jonathan Kadmon, Cephra Raja, Adelaida Chibukhchyan, Charu Ramakrishnan, Masatoshi Inoue,[...]. Science 2019
150
11

Comparative Evaluation of Genetically Encoded Voltage Indicators.
Yuki Bando, Masayuki Sakamoto, Samuel Kim, Inbal Ayzenshtat, Rafael Yuste. Cell Rep 2019
68
16

Mechanism of voltage-sensitive fluorescence in a microbial rhodopsin.
Dougal Maclaurin, Veena Venkatachalam, Hohjai Lee, Adam E Cohen. Proc Natl Acad Sci U S A 2013
77
14

NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics.
Elena G Govorunova, Oleg A Sineshchekov, Roger Janz, Xiaoqin Liu, John L Spudich. Science 2015
298
10

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
289
10

A genetically encoded near-infrared fluorescent calcium ion indicator.
Yong Qian, Kiryl D Piatkevich, Benedict Mc Larney, Ahmed S Abdelfattah, Sohum Mehta, Mitchell H Murdock, Sven Gottschalk, Rosana S Molina, Wei Zhang, Yingche Chen,[...]. Nat Methods 2019
80
12

Molecular and cellular approaches for diversifying and extending optogenetics.
Viviana Gradinaru, Feng Zhang, Charu Ramakrishnan, Joanna Mattis, Rohit Prakash, Ilka Diester, Inbal Goshen, Kimberly R Thompson, Karl Deisseroth. Cell 2010
609
10

Cardiotoxicity screening with simultaneous optogenetic pacing, voltage imaging and calcium imaging.
Graham T Dempsey, Khuram W Chaudhary, Nicholas Atwater, Cuong Nguyen, Barry S Brown, John D McNeish, Adam E Cohen, Joel M Kralj. J Pharmacol Toxicol Methods 2016
84
10

Genetically Targeted All-Optical Electrophysiology with a Transgenic Cre-Dependent Optopatch Mouse.
Shan Lou, Yoav Adam, Eli N Weinstein, Erika Williams, Katherine Williams, Vicente Parot, Nikita Kavokine, Stephen Liberles, Linda Madisen, Hongkui Zeng,[...]. J Neurosci 2016
49
18

Electrical spiking in Escherichia coli probed with a fluorescent voltage-indicating protein.
Joel M Kralj, Daniel R Hochbaum, Adam D Douglass, Adam E Cohen. Science 2011
210
9

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
9


Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics.
Jasper Akerboom, Nicole Carreras Calderón, Lin Tian, Sebastian Wabnig, Matthias Prigge, Johan Tolö, Andrew Gordus, Michael B Orger, Kristen E Severi, John J Macklin,[...]. Front Mol Neurosci 2013
420
9

Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
626
9


Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri.
Feng Zhang, Matthias Prigge, Florent Beyrière, Satoshi P Tsunoda, Joanna Mattis, Ofer Yizhar, Peter Hegemann, Karl Deisseroth. Nat Neurosci 2008
337
9

All-Optical Electrophysiology for High-Throughput Functional Characterization of a Human iPSC-Derived Motor Neuron Model of ALS.
Evangelos Kiskinis, Joel M Kralj, Peng Zou, Eli N Weinstein, Hongkang Zhang, Konstantinos Tsioras, Ole Wiskow, J Alberto Ortega, Kevin Eggan, Adam E Cohen. Stem Cell Reports 2018
31
29

OptoDyCE as an automated system for high-throughput all-optical dynamic cardiac electrophysiology.
Aleksandra Klimas, Christina M Ambrosi, Jinzhu Yu, John C Williams, Harold Bien, Emilia Entcheva. Nat Commun 2016
86
9

Palette of fluorinated voltage-sensitive hemicyanine dyes.
Ping Yan, Corey D Acker, Wen-Liang Zhou, Peter Lee, Christian Bollensdorff, Adrian Negrean, Jacopo Lotti, Leonardo Sacconi, Srdjan D Antic, Peter Kohl,[...]. Proc Natl Acad Sci U S A 2012
105
8

All-Optical Interrogation of Neural Circuits.
Valentina Emiliani, Adam E Cohen, Karl Deisseroth, Michael Häusser. J Neurosci 2015
162
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.