A citation-based method for searching scientific literature

Jia Meng, Zhiliang Lu, Hui Liu, Lin Zhang, Shaowu Zhang, Yidong Chen, Manjeet K Rao, Yufei Huang. Methods 2014
Times Cited: 95







List of co-cited articles
713 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq.
Dan Dominissini, Sharon Moshitch-Moshkovitz, Schraga Schwartz, Mali Salmon-Divon, Lior Ungar, Sivan Osenberg, Karen Cesarkas, Jasmine Jacob-Hirsch, Ninette Amariglio, Martin Kupiec,[...]. Nature 2012
76

Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.
Kate D Meyer, Yogesh Saletore, Paul Zumbo, Olivier Elemento, Christopher E Mason, Samie R Jaffrey. Cell 2012
65

N6-methyladenosine-dependent regulation of messenger RNA stability.
Xiao Wang, Zhike Lu, Adrian Gomez, Gary C Hon, Yanan Yue, Dali Han, Ye Fu, Marc Parisien, Qing Dai, Guifang Jia,[...]. Nature 2014
49

N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO.
Guifang Jia, Ye Fu, Xu Zhao, Qing Dai, Guanqun Zheng, Ying Yang, Chengqi Yi, Tomas Lindahl, Tao Pan, Yun-Gui Yang,[...]. Nat Chem Biol 2011
47

N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency.
Xiao Wang, Boxuan Simen Zhao, Ian A Roundtree, Zhike Lu, Dali Han, Honghui Ma, Xiaocheng Weng, Kai Chen, Hailing Shi, Chuan He. Cell 2015
46

ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility.
Guanqun Zheng, John Arne Dahl, Yamei Niu, Peter Fedorcsak, Chun-Min Huang, Charles J Li, Cathrine B Vågbø, Yue Shi, Wen-Ling Wang, Shu-Hui Song,[...]. Mol Cell 2013
41

A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation.
Jianzhao Liu, Yanan Yue, Dali Han, Xiao Wang, Ye Fu, Liang Zhang, Guifang Jia, Miao Yu, Zhike Lu, Xin Deng,[...]. Nat Chem Biol 2014
37

Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase.
Xiao-Li Ping, Bao-Fa Sun, Lu Wang, Wen Xiao, Xin Yang, Wen-Jia Wang, Samir Adhikari, Yue Shi, Ying Lv, Yu-Sheng Chen,[...]. Cell Res 2014
830
35

Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites.
Schraga Schwartz, Maxwell R Mumbach, Marko Jovanovic, Tim Wang, Karolina Maciag, G Guy Bushkin, Philipp Mertins, Dmitry Ter-Ovanesyan, Naomi Habib, Davide Cacchiarelli,[...]. Cell Rep 2014
570
32

N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells.
Yang Wang, Yue Li, Julia I Toth, Matthew D Petroski, Zhaolei Zhang, Jing Crystal Zhao. Nat Cell Biol 2014
644
32

HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
32

Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome.
Bastian Linder, Anya V Grozhik, Anthony O Olarerin-George, Cem Meydan, Christopher E Mason, Samie R Jaffrey. Nat Methods 2015
597
30

Gene expression regulation mediated through reversible m⁶A RNA methylation.
Ye Fu, Dan Dominissini, Gideon Rechavi, Chuan He. Nat Rev Genet 2014
676
29

Stem cells. m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation.
Shay Geula, Sharon Moshitch-Moshkovitz, Dan Dominissini, Abed AlFatah Mansour, Nitzan Kol, Mali Salmon-Divon, Vera Hershkovitz, Eyal Peer, Nofar Mor, Yair S Manor,[...]. Science 2015
750
28

5' UTR m(6)A Promotes Cap-Independent Translation.
Kate D Meyer, Deepak P Patil, Jun Zhou, Alexandra Zinoviev, Maxim A Skabkin, Olivier Elemento, Tatyana V Pestova, Shu-Bing Qian, Samie R Jaffrey. Cell 2015
751
28

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
28

Dynamic m(6)A mRNA methylation directs translational control of heat shock response.
Jun Zhou, Ji Wan, Xiangwei Gao, Xingqian Zhang, Samie R Jaffrey, Shu-Bing Qian. Nature 2015
595
26

FTO Plays an Oncogenic Role in Acute Myeloid Leukemia as a N6-Methyladenosine RNA Demethylase.
Zejuan Li, Hengyou Weng, Rui Su, Xiaocheng Weng, Zhixiang Zuo, Chenying Li, Huilin Huang, Sigrid Nachtergaele, Lei Dong, Chao Hu,[...]. Cancer Cell 2017
591
26

Transcriptome-wide mapping of N(6)-methyladenosine by m(6)A-seq based on immunocapturing and massively parallel sequencing.
Dan Dominissini, Sharon Moshitch-Moshkovitz, Mali Salmon-Divon, Ninette Amariglio, Gideon Rechavi. Nat Protoc 2013
291
25

Dynamic RNA Modifications in Gene Expression Regulation.
Ian A Roundtree, Molly E Evans, Tao Pan, Chuan He. Cell 2017
880
25

RNA-methylation-dependent RNA processing controls the speed of the circadian clock.
Jean-Michel Fustin, Masao Doi, Yoshiaki Yamaguchi, Hayashi Hida, Shinichi Nishimura, Minoru Yoshida, Takayuki Isagawa, Masaki Suimye Morioka, Hideaki Kakeya, Ichiro Manabe,[...]. Cell 2013
497
24

Nuclear m(6)A Reader YTHDC1 Regulates mRNA Splicing.
Wen Xiao, Samir Adhikari, Ujwal Dahal, Yu-Sheng Chen, Ya-Juan Hao, Bao-Fa Sun, Hui-Ying Sun, Ang Li, Xiao-Li Ping, Wei-Yi Lai,[...]. Mol Cell 2016
637
24

YTHDF3 facilitates translation and decay of N6-methyladenosine-modified RNA.
Hailing Shi, Xiao Wang, Zhike Lu, Boxuan S Zhao, Honghui Ma, Phillip J Hsu, Chang Liu, Chuan He. Cell Res 2017
516
24

Exome-based analysis for RNA epigenome sequencing data.
Jia Meng, Xiaodong Cui, Manjeet K Rao, Yidong Chen, Yufei Huang. Bioinformatics 2013
69
31

Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells.
R Desrosiers, K Friderici, F Rottman. Proc Natl Acad Sci U S A 1974
726
22

The dynamic epitranscriptome: N6-methyladenosine and gene expression control.
Kate D Meyer, Samie R Jaffrey. Nat Rev Mol Cell Biol 2014
438
21

N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions.
Nian Liu, Qing Dai, Guanqun Zheng, Chuan He, Marc Parisien, Tao Pan. Nature 2015
781
21

m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells.
Pedro J Batista, Benoit Molinie, Jinkai Wang, Kun Qu, Jiajing Zhang, Lingjie Li, Donna M Bouley, Ernesto Lujan, Bahareh Haddad, Kaveh Daneshvar,[...]. Cell Stem Cell 2014
562
21

The N6-methyladenosine (m6A)-forming enzyme METTL3 controls myeloid differentiation of normal hematopoietic and leukemia cells.
Ly P Vu, Brian F Pickering, Yuanming Cheng, Sara Zaccara, Diu Nguyen, Gerard Minuesa, Timothy Chou, Arthur Chow, Yogesh Saletore, Matthew MacKay,[...]. Nat Med 2017
454
21

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
20

N6-methyladenosine marks primary microRNAs for processing.
Claudio R Alarcón, Hyeseung Lee, Hani Goodarzi, Nils Halberg, Sohail F Tavazoie. Nature 2015
537
20

Post-transcriptional gene regulation by mRNA modifications.
Boxuan Simen Zhao, Ian A Roundtree, Chuan He. Nat Rev Mol Cell Biol 2017
657
20

Reversible methylation of m6Am in the 5' cap controls mRNA stability.
Jan Mauer, Xiaobing Luo, Alexandre Blanjoie, Xinfu Jiao, Anya V Grozhik, Deepak P Patil, Bastian Linder, Brian F Pickering, Jean-Jacques Vasseur, Qiuying Chen,[...]. Nature 2017
432
20

Rethinking m6A Readers, Writers, and Erasers.
Kate D Meyer, Samie R Jaffrey. Annu Rev Cell Dev Biol 2017
360
20

The m(6)A Methyltransferase METTL3 Promotes Translation in Human Cancer Cells.
Shuibin Lin, Junho Choe, Peng Du, Robinson Triboulet, Richard I Gregory. Mol Cell 2016
601
18

A majority of m6A residues are in the last exons, allowing the potential for 3' UTR regulation.
Shengdong Ke, Endalkachew A Alemu, Claudia Mertens, Emily Conn Gantman, John J Fak, Aldo Mele, Bhagwattie Haripal, Ilana Zucker-Scharff, Michael J Moore, Christopher Y Park,[...]. Genes Dev 2015
351
18

Promoter-bound METTL3 maintains myeloid leukaemia by m6A-dependent translation control.
Isaia Barbieri, Konstantinos Tzelepis, Luca Pandolfini, Junwei Shi, Gonzalo Millán-Zambrano, Samuel C Robson, Demetrios Aspris, Valentina Migliori, Andrew J Bannister, Namshik Han,[...]. Nature 2017
393
18

Hypoxia induces the breast cancer stem cell phenotype by HIF-dependent and ALKBH5-mediated m⁶A-demethylation of NANOG mRNA.
Chuanzhao Zhang, Debangshu Samanta, Haiquan Lu, John W Bullen, Huimin Zhang, Ivan Chen, Xiaoshun He, Gregg L Semenza. Proc Natl Acad Sci U S A 2016
463
17

RNA m6A methylation regulates the ultraviolet-induced DNA damage response.
Yang Xiang, Benoit Laurent, Chih-Hung Hsu, Sigrid Nachtergaele, Zhike Lu, Wanqiang Sheng, Chuanyun Xu, Hao Chen, Jian Ouyang, Siqing Wang,[...]. Nature 2017
359
17

MODOMICS: a database of RNA modification pathways. 2017 update.
Pietro Boccaletto, Magdalena A Machnicka, Elzbieta Purta, Pawel Piatkowski, Blazej Baginski, Tomasz K Wirecki, Valérie de Crécy-Lagard, Robert Ross, Patrick A Limbach, Annika Kotter,[...]. Nucleic Acids Res 2018
671
17

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
16

m(6)A RNA methylation promotes XIST-mediated transcriptional repression.
Deepak P Patil, Chun-Kan Chen, Brian F Pickering, Amy Chow, Constanza Jackson, Mitchell Guttman, Samie R Jaffrey. Nature 2016
580
16

m6A Demethylase ALKBH5 Maintains Tumorigenicity of Glioblastoma Stem-like Cells by Sustaining FOXM1 Expression and Cell Proliferation Program.
Sicong Zhang, Boxuan Simen Zhao, Aidong Zhou, Kangyu Lin, Shaoping Zheng, Zhike Lu, Yaohui Chen, Erik P Sulman, Keping Xie, Oliver Bögler,[...]. Cancer Cell 2017
575
16

m6A mRNA methylation controls T cell homeostasis by targeting the IL-7/STAT5/SOCS pathways.
Hua-Bing Li, Jiyu Tong, Shu Zhu, Pedro J Batista, Erin E Duffy, Jun Zhao, Will Bailis, Guangchao Cao, Lina Kroehling, Yuanyuan Chen,[...]. Nature 2017
280
16

m6A RNA Methylation Regulates the Self-Renewal and Tumorigenesis of Glioblastoma Stem Cells.
Qi Cui, Hailing Shi, Peng Ye, Li Li, Qiuhao Qu, Guoqiang Sun, Guihua Sun, Zhike Lu, Yue Huang, Cai-Guang Yang,[...]. Cell Rep 2017
506
16

m(6)A RNA methylation is regulated by microRNAs and promotes reprogramming to pluripotency.
Tong Chen, Ya-Juan Hao, Ying Zhang, Miao-Miao Li, Meng Wang, Weifang Han, Yongsheng Wu, Ying Lv, Jie Hao, Libin Wang,[...]. Cell Stem Cell 2015
298
15


A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq data.
Xiaodong Cui, Jia Meng, Shaowu Zhang, Yidong Chen, Yufei Huang. Bioinformatics 2016
43
34

FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis.
Xu Zhao, Ying Yang, Bao-Fa Sun, Yue Shi, Xin Yang, Wen Xiao, Ya-Juan Hao, Xiao-Li Ping, Yu-Sheng Chen, Wen-Jia Wang,[...]. Cell Res 2014
474
15

METTL14 Inhibits Hematopoietic Stem/Progenitor Differentiation and Promotes Leukemogenesis via mRNA m6A Modification.
Hengyou Weng, Huilin Huang, Huizhe Wu, Xi Qin, Boxuan Simen Zhao, Lei Dong, Hailing Shi, Jennifer Skibbe, Chao Shen, Chao Hu,[...]. Cell Stem Cell 2018
351
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.