A citation-based method for searching scientific literature

Jonathon G Keeney, Laura Dumas, James M Sikela. Front Hum Neurosci 2014
Times Cited: 25







List of co-cited articles
235 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DUF1220-domain copy number implicated in human brain-size pathology and evolution.
Laura J Dumas, Majesta S O'Bleness, Jonathan M Davis, C Michael Dickens, Nathan Anderson, J G Keeney, Jay Jackson, Megan Sikela, Armin Raznahan, Jay Giedd,[...]. Am J Hum Genet 2012
69
80

Human lineage-specific amplification, selection, and neuronal expression of DUF1220 domains.
Magdalena C Popesco, Erik J Maclaren, Janet Hopkins, Laura Dumas, Michael Cox, Lynne Meltesen, Loris McGavran, Gerald J Wyckoff, James M Sikela. Science 2006
126
68

DUF1220 dosage is linearly associated with increasing severity of the three primary symptoms of autism.
Jonathan M Davis, Veronica B Searles, Nathan Anderson, Jonathon Keeney, Laura Dumas, James M Sikela. PLoS Genet 2014
33
64

DUF1220 protein domains drive proliferation in human neural stem cells and are associated with increased cortical volume in anthropoid primates.
J G Keeney, J M Davis, J Siegenthaler, M D Post, B S Nielsen, W D Hopkins, J M Sikela. Brain Struct Funct 2015
33
64

Evolutionary history and genome organization of DUF1220 protein domains.
Majesta S O'Bleness, C Michael Dickens, Laura J Dumas, Hildegard Kehrer-Sawatzki, Gerald J Wyckoff, James M Sikela. G3 (Bethesda) 2012
47
60

A novel gene family NBPF: intricate structure generated by gene duplications during primate evolution.
Karl Vandepoele, Nadine Van Roy, Katrien Staes, Frank Speleman, Frans van Roy. Mol Biol Evol 2005
95
52

DUF1220 domains, cognitive disease, and human brain evolution.
L Dumas, J M Sikela. Cold Spring Harb Symp Quant Biol 2009
42
52

DUF1220 copy number is linearly associated with increased cognitive function as measured by total IQ and mathematical aptitude scores.
Jonathon M Davis, Veronica B Searles, Nathan Anderson, Jonathon Keeney, Armin Raznahan, L John Horwood, David M Fergusson, Martin A Kennedy, Jay Giedd, James M Sikela. Hum Genet 2015
17
52


Finished sequence and assembly of the DUF1220-rich 1q21 region using a haploid human genome.
Majesta O'Bleness, Veronica B Searles, C Michael Dickens, David Astling, Derek Albracht, Angel C Y Mak, Yvonne Y Y Lai, Chin Lin, Catherine Chu, Tina Graves,[...]. BMC Genomics 2014
29
32

Recurrent reciprocal 1q21.1 deletions and duplications associated with microcephaly or macrocephaly and developmental and behavioral abnormalities.
Nicola Brunetti-Pierri, Jonathan S Berg, Fernando Scaglia, John Belmont, Carlos A Bacino, Trilochan Sahoo, Seema R Lalani, Brett Graham, Brendan Lee, Marwan Shinawi,[...]. Nat Genet 2008
393
32


Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion.
Marta Florio, Mareike Albert, Elena Taverna, Takashi Namba, Holger Brandl, Eric Lewitus, Christiane Haffner, Alex Sykes, Fong Kuan Wong, Jula Peters,[...]. Science 2015
275
28


Evolution of genetic and genomic features unique to the human lineage.
Majesta O'Bleness, Veronica B Searles, Ajit Varki, Pascal Gagneux, James M Sikela. Nat Rev Genet 2012
82
24

Recurrent rearrangements of chromosome 1q21.1 and variable pediatric phenotypes.
Heather C Mefford, Andrew J Sharp, Carl Baker, Andy Itsara, Zhaoshi Jiang, Karen Buysse, Shuwen Huang, Viv K Maloney, John A Crolla, Diana Baralle,[...]. N Engl J Med 2008
517
24

Inhibition of SRGAP2 function by its human-specific paralogs induces neoteny during spine maturation.
Cécile Charrier, Kaumudi Joshi, Jaeda Coutinho-Budd, Ji-Eun Kim, Nelle Lambert, Jacqueline de Marchena, Wei-Lin Jin, Pierre Vanderhaeghen, Anirvan Ghosh, Takayuki Sassa,[...]. Cell 2012
215
24

Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication.
Megan Y Dennis, Xander Nuttle, Peter H Sudmant, Francesca Antonacci, Tina A Graves, Mikhail Nefedov, Jill A Rosenfeld, Saba Sajjadian, Maika Malig, Holland Kotkiewicz,[...]. Cell 2012
196
24

Human-chimpanzee differences in a FZD8 enhancer alter cell-cycle dynamics in the developing neocortex.
J Lomax Boyd, Stephanie L Skove, Jeremy P Rouanet, Louis-Jan Pilaz, Tristan Bepler, Raluca Gordân, Gregory A Wray, Debra L Silver. Curr Biol 2015
104
24

Lineage-specific gene duplication and loss in human and great ape evolution.
Andrew Fortna, Young Kim, Erik MacLaren, Kriste Marshall, Gretchen Hahn, Lynne Meltesen, Matthew Brenton, Raquel Hink, Sonya Burgers, Tina Hernandez-Boussard,[...]. PLoS Biol 2004
193
24

Forces shaping the fastest evolving regions in the human genome.
Katherine S Pollard, Sofie R Salama, Bryan King, Andrew D Kern, Tim Dreszer, Sol Katzman, Adam Siepel, Jakob S Pedersen, Gill Bejerano, Robert Baertsch,[...]. PLoS Genet 2006
254
24

Fast-evolving noncoding sequences in the human genome.
Christine P Bird, Barbara E Stranger, Maureen Liu, Daryl J Thomas, Catherine E Ingle, Claude Beazley, Webb Miller, Matthew E Hurles, Emmanouil T Dermitzakis. Genome Biol 2007
97
20

A humanized version of Foxp2 affects cortico-basal ganglia circuits in mice.
Wolfgang Enard, Sabine Gehre, Kurt Hammerschmidt, Sabine M Hölter, Torsten Blass, Mehmet Somel, Martina K Brückner, Christiane Schreiweis, Christine Winter, Reinhard Sohr,[...]. Cell 2009
281
20

Molecular evolution of FOXP2, a gene involved in speech and language.
Wolfgang Enard, Molly Przeworski, Simon E Fisher, Cecilia S L Lai, Victor Wiebe, Takashi Kitano, Anthony P Monaco, Svante Pääbo. Nature 2002
632
20

A fast-evolving human NPAS3 enhancer gained reporter expression in the developing forebrain of transgenic mice.
Gretel B Kamm, Rodrigo López-Leal, Juan R Lorenzo, Lucía F Franchini. Philos Trans R Soc Lond B Biol Sci 2013
23
21

Overall brain size, and not encephalization quotient, best predicts cognitive ability across non-human primates.
Robert O Deaner, Karin Isler, Judith Burkart, Carel van Schaik. Brain Behav Evol 2007
231
20

Diversity of human copy number variation and multicopy genes.
Peter H Sudmant, Jacob O Kitzman, Francesca Antonacci, Can Alkan, Maika Malig, Anya Tsalenko, Nick Sampas, Laurakay Bruhn, Jay Shendure, Evan E Eichler. Science 2010
433
20

Changing the name of the NBPF/DUF1220 domain to the Olduvai domain.
James M Sikela, Frans van Roy. F1000Res 2017
8
62

Cerebral organoids model human brain development and microcephaly.
Madeline A Lancaster, Magdalena Renner, Carol-Anne Martin, Daniel Wenzel, Louise S Bicknell, Matthew E Hurles, Tessa Homfray, Josef M Penninger, Andrew P Jackson, Juergen A Knoblich. Nature 2013
16

The cell biology of neurogenesis: toward an understanding of the development and evolution of the neocortex.
Elena Taverna, Magdalena Götz, Wieland B Huttner. Annu Rev Cell Dev Biol 2014
353
16

Many human accelerated regions are developmental enhancers.
John A Capra, Genevieve D Erwin, Gabriel McKinsey, John L R Rubenstein, Katherine S Pollard. Philos Trans R Soc Lond B Biol Sci 2013
90
16

Accelerated evolution of conserved noncoding sequences in humans.
Shyam Prabhakar, James P Noonan, Svante Pääbo, Edward M Rubin. Science 2006
245
16



The developmental brain gene NPAS3 contains the largest number of accelerated regulatory sequences in the human genome.
Gretel B Kamm, Francisco Pisciottano, Rafi Kliger, Lucía F Franchini. Mol Biol Evol 2013
47
16

A forkhead-domain gene is mutated in a severe speech and language disorder.
C S Lai, S E Fisher, J A Hurst, F Vargha-Khadem, A P Monaco. Nature 2001
987
16


A high-resolution map of human evolutionary constraint using 29 mammals.
Kerstin Lindblad-Toh, Manuel Garber, Or Zuk, Michael F Lin, Brian J Parker, Stefan Washietl, Pouya Kheradpour, Jason Ernst, Gregory Jordan, Evan Mauceli,[...]. Nature 2011
665
16

An RNA gene expressed during cortical development evolved rapidly in humans.
Katherine S Pollard, Sofie R Salama, Nelle Lambert, Marie-Alexandra Lambot, Sandra Coppens, Jakob S Pedersen, Sol Katzman, Bryan King, Courtney Onodera, Adam Siepel,[...]. Nature 2006
552
16

Contrasts between adaptive coding and noncoding changes during human evolution.
Ralph Haygood, Courtney C Babbitt, Olivier Fedrigo, Gregory A Wray. Proc Natl Acad Sci U S A 2010
61
16

Did brain-specific genes evolve faster in humans than in chimpanzees?
Peng Shi, Margaret A Bakewell, Jianzhi Zhang. Trends Genet 2006
37
16

Development and evolution of the human neocortex.
Jan H Lui, David V Hansen, Arnold R Kriegstein. Cell 2011
692
16

Palindromic GOLGA8 core duplicons promote chromosome 15q13.3 microdeletion and evolutionary instability.
Francesca Antonacci, Megan Y Dennis, John Huddleston, Peter H Sudmant, Karyn Meltz Steinberg, Jill A Rosenfeld, Mattia Miroballo, Tina A Graves, Laura Vives, Maika Malig,[...]. Nat Genet 2014
61
16

Molecular identity of human outer radial glia during cortical development.
Alex A Pollen, Tomasz J Nowakowski, Jiadong Chen, Hanna Retallack, Carmen Sandoval-Espinosa, Cory R Nicholas, Joe Shuga, Siyuan John Liu, Michael C Oldham, Aaron Diaz,[...]. Cell 2015
363
16

Human-specific loss of regulatory DNA and the evolution of human-specific traits.
Cory Y McLean, Philip L Reno, Alex A Pollen, Abraham I Bassan, Terence D Capellini, Catherine Guenther, Vahan B Indjeian, Xinhong Lim, Douglas B Menke, Bruce T Schaar,[...]. Nature 2011
256
16

Evolution and diversity of copy number variation in the great ape lineage.
Peter H Sudmant, John Huddleston, Claudia R Catacchio, Maika Malig, Ladeana W Hillier, Carl Baker, Kiana Mohajeri, Ivanela Kondova, Ronald E Bontrop, Stephan Persengiev,[...]. Genome Res 2013
85
16

Neuron number and size in prefrontal cortex of children with autism.
Eric Courchesne, Peter R Mouton, Michael E Calhoun, Katerina Semendeferi, Clelia Ahrens-Barbeau, Melodie J Hallet, Cynthia Carter Barnes, Karen Pierce. JAMA 2011
403
12

Neurogenic radial glia in the outer subventricular zone of human neocortex.
David V Hansen, Jan H Lui, Philip R L Parker, Arnold R Kriegstein. Nature 2010
730
12

Evolutionarily dynamic alternative splicing of GPR56 regulates regional cerebral cortical patterning.
Byoung-Il Bae, Ian Tietjen, Kutay D Atabay, Gilad D Evrony, Matthew B Johnson, Ebenezer Asare, Peter P Wang, Ayako Y Murayama, Kiho Im, Steven N Lisgo,[...]. Science 2014
126
12

Evidence of brain overgrowth in the first year of life in autism.
Eric Courchesne, Ruth Carper, Natacha Akshoomoff. JAMA 2003
626
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.