A citation-based method for searching scientific literature

Ewa Przybytkowski, Elizabeth Lenkiewicz, Michael T Barrett, Kathleen Klein, Sheida Nabavi, Celia M T Greenwood, Mark Basik. BMC Genomics 2014
Times Cited: 32







List of co-cited articles
219 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Massive genomic rearrangement acquired in a single catastrophic event during cancer development.
Philip J Stephens, Chris D Greenman, Beiyuan Fu, Fengtang Yang, Graham R Bignell, Laura J Mudie, Erin D Pleasance, King Wai Lau, David Beare, Lucy A Stebbings,[...]. Cell 2011
59

Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations.
Tobias Rausch, David T W Jones, Marc Zapatka, Adrian M Stütz, Thomas Zichner, Joachim Weischenfeldt, Natalie Jäger, Marc Remke, David Shih, Paul A Northcott,[...]. Cell 2012
521
46

Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens.
Haoyang Cai, Nitin Kumar, Homayoun C Bagheri, Christian von Mering, Mark D Robinson, Michael Baudis. BMC Genomics 2014
70
34

DNA breaks and chromosome pulverization from errors in mitosis.
Karen Crasta, Neil J Ganem, Regina Dagher, Alexandra B Lantermann, Elena V Ivanova, Yunfeng Pan, Luigi Nezi, Alexei Protopopov, Dipanjan Chowdhury, David Pellman. Nature 2012
703
34

Criteria for inference of chromothripsis in cancer genomes.
Jan O Korbel, Peter J Campbell. Cell 2013
292
31

Chromothripsis and Kataegis Induced by Telomere Crisis.
John Maciejowski, Yilong Li, Nazario Bosco, Peter J Campbell, Titia de Lange. Cell 2015
313
31

Chromothripsis from DNA damage in micronuclei.
Cheng-Zhong Zhang, Alexander Spektor, Hauke Cornils, Joshua M Francis, Emily K Jackson, Shiwei Liu, Matthew Meyerson, David Pellman. Nature 2015
515
28

Sequencing of neuroblastoma identifies chromothripsis and defects in neuritogenesis genes.
Jan J Molenaar, Jan Koster, Danny A Zwijnenburg, Peter van Sluis, Linda J Valentijn, Ida van der Ploeg, Mohamed Hamdi, Johan van Nes, Bart A Westerman, Jennemiek van Arkel,[...]. Nature 2012
561
28

A cell-based model system links chromothripsis with hyperploidy.
Balca R Mardin, Alexandros P Drainas, Sebastian M Waszak, Joachim Weischenfeldt, Mayumi Isokane, Adrian M Stütz, Benjamin Raeder, Theocharis Efthymiopoulos, Christopher Buccitelli, Maia Segura-Wang,[...]. Mol Syst Biol 2015
77
28

Constitutional and somatic rearrangement of chromosome 21 in acute lymphoblastic leukaemia.
Yilong Li, Claire Schwab, Sarra Ryan, Elli Papaemmanuil, Hazel M Robinson, Patricia Jacobs, Anthony V Moorman, Sara Dyer, Julian Borrow, Mike Griffiths,[...]. Nature 2014
159
25

Chromothripsis and cancer: causes and consequences of chromosome shattering.
Josep V Forment, Abderrahmane Kaidi, Stephen P Jackson. Nat Rev Cancer 2012
219
25

Chromothripsis: A New Mechanism for Rapid Karyotype Evolution.
Mitchell L Leibowitz, Cheng-Zhong Zhang, David Pellman. Annu Rev Genet 2015
101
25

Chromothripsis is a common mechanism driving genomic rearrangements in primary and metastatic colorectal cancer.
Wigard P Kloosterman, Marlous Hoogstraat, Oscar Paling, Masoumeh Tavakoli-Yaraki, Ivo Renkens, Joost S Vermaat, Markus J van Roosmalen, Stef van Lieshout, Isaac J Nijman, Wijnand Roessingh,[...]. Genome Biol 2011
125
21

Punctuated evolution of prostate cancer genomes.
Sylvan C Baca, Davide Prandi, Michael S Lawrence, Juan Miguel Mosquera, Alessandro Romanel, Yotam Drier, Kyung Park, Naoki Kitabayashi, Theresa Y MacDonald, Mahmoud Ghandi,[...]. Cell 2013
721
21

Breakpoint profiling of 64 cancer genomes reveals numerous complex rearrangements spawned by homology-independent mechanisms.
Ankit Malhotra, Michael Lindberg, Gregory G Faust, Mitchell L Leibowitz, Royden A Clark, Ryan M Layer, Aaron R Quinlan, Ira M Hall. Genome Res 2013
119
21

Chromothripsis identifies a rare and aggressive entity among newly diagnosed multiple myeloma patients.
Florence Magrangeas, Hervé Avet-Loiseau, Nikhil C Munshi, Stéphane Minvielle. Blood 2011
128
21

Chromothripsis in cancer cells: An update.
Agata Rode, Kendra Korinna Maass, Karolin Viktoria Willmund, Peter Lichter, Aurélie Ernst. Int J Cancer 2016
76
21

Genomic profiling of Acute lymphoblastic leukemia in ataxia telangiectasia patients reveals tight link between ATM mutations and chromothripsis.
M Ratnaparkhe, M Hlevnjak, T Kolb, A Jauch, K K Maass, F Devens, A Rode, V Hovestadt, A Korshunov, A Pastorczak,[...]. Leukemia 2017
24
29

The architecture and evolution of cancer neochromosomes.
Dale W Garsed, Owen J Marshall, Vincent D A Corbin, Arthur Hsu, Leon Di Stefano, Jan Schröder, Jason Li, Zhi-Ping Feng, Bo W Kim, Mark Kowarsky,[...]. Cancer Cell 2014
96
18


Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis.
Katia Nones, Nicola Waddell, Nicci Wayte, Ann-Marie Patch, Peter Bailey, Felicity Newell, Oliver Holmes, J Lynn Fink, Michael C J Quinn, Yue Hang Tang,[...]. Nat Commun 2014
148
18

Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes.
Tae-Min Kim, Ruibin Xi, Lovelace J Luquette, Richard W Park, Mark D Johnson, Peter J Park. Genome Res 2013
100
18

Chromothripsis and focal copy number alterations determine poor outcome in malignant melanoma.
Daniela Hirsch, Ralf Kemmerling, Sean Davis, Jordi Camps, Paul S Meltzer, Thomas Ried, Timo Gaiser. Cancer Res 2013
61
18

Whole-genome sequencing identifies genomic heterogeneity at a nucleotide and chromosomal level in bladder cancer.
Carl D Morrison, Pengyuan Liu, Anna Woloszynska-Read, Jianmin Zhang, Wei Luo, Maochun Qin, Wiam Bshara, Jeffrey M Conroy, Linda Sabatini, Peter Vedell,[...]. Proc Natl Acad Sci U S A 2014
61
18


Telomere dysfunction and chromothripsis.
Aurélie Ernst, David T W Jones, Kendra K Maass, Agata Rode, Katharina I Deeg, Billy Michael Chelliah Jebaraj, Andrey Korshunov, Volker Hovestadt, Michael A Tainsky, Kristian W Pajtler,[...]. Int J Cancer 2016
30
20

Prevalence and clinical implications of chromothripsis in cancer genomes.
Wigard P Kloosterman, Jan Koster, Jan J Molenaar. Curr Opin Oncol 2014
57
18

Chromothripsis-like chromosomal rearrangements induced by ionizing radiation using proton microbeam irradiation system.
Maki Morishita, Tomoki Muramatsu, Yumiko Suto, Momoki Hirai, Teruaki Konishi, Shin Hayashi, Daichi Shigemizu, Tatsuhiko Tsunoda, Keiji Moriyama, Johji Inazawa. Oncotarget 2016
32
18

The elusive evidence for chromothripsis.
Marcus Kinsella, Anand Patel, Vineet Bafna. Nucleic Acids Res 2014
29
17

Chromothripsis: chromosomes in crisis.
Mathew J K Jones, Prasad V Jallepalli. Dev Cell 2012
96
15

Cancer genomes evolve by pulverizing single chromosomes.
Matthew Meyerson, David Pellman. Cell 2011
64
15

Chromosome catastrophes involve replication mechanisms generating complex genomic rearrangements.
Pengfei Liu, Ayelet Erez, Sandesh C Sreenath Nagamani, Shweta U Dhar, Katarzyna E Kołodziejska, Avinash V Dharmadhikari, M Lance Cooper, Joanna Wiszniewska, Feng Zhang, Marjorie A Withers,[...]. Cell 2011
282
15

Telomeres in cancer: tumour suppression and genome instability.
John Maciejowski, Titia de Lange. Nat Rev Mol Cell Biol 2017
263
15

Mutational processes molding the genomes of 21 breast cancers.
Serena Nik-Zainal, Ludmil B Alexandrov, David C Wedge, Peter Van Loo, Christopher D Greenman, Keiran Raine, David Jones, Jonathan Hinton, John Marshall, Lucy A Stebbings,[...]. Cell 2012
15

Complex landscapes of somatic rearrangement in human breast cancer genomes.
Philip J Stephens, David J McBride, Meng-Lay Lin, Ignacio Varela, Erin D Pleasance, Jared T Simpson, Lucy A Stebbings, Catherine Leroy, Sarah Edkins, Laura J Mudie,[...]. Nature 2009
609
12

Chromothripsis and beyond: rapid genome evolution from complex chromosomal rearrangements.
Cheng-Zhong Zhang, Mitchell L Leibowitz, David Pellman. Genes Dev 2013
153
12

Subgroup-specific structural variation across 1,000 medulloblastoma genomes.
Paul A Northcott, David J H Shih, John Peacock, Livia Garzia, A Sorana Morrissy, Thomas Zichner, Adrian M Stütz, Andrey Korshunov, Jüri Reimand, Steven E Schumacher,[...]. Nature 2012
531
12

Molecular mechanisms of micronucleus, nucleoplasmic bridge and nuclear bud formation in mammalian and human cells.
M Fenech, M Kirsch-Volders, A T Natarajan, J Surralles, J W Crott, J Parry, H Norppa, D A Eastmond, J D Tucker, P Thomas. Mutagenesis 2011
637
12

ShatterProof: operational detection and quantification of chromothripsis.
Shaylan K Govind, Amin Zia, Pablo H Hennings-Yeomans, John D Watson, Michael Fraser, Catalina Anghel, Alexander W Wyatt, Theodorus van der Kwast, Colin C Collins, John D McPherson,[...]. BMC Bioinformatics 2014
36
12


Chromothripsis: breakage-fusion-bridge over and over again.
Carlos Oscar Sánchez Sorzano, Alberto Pascual-Montano, Ainhoa Sánchez de Diego, Carlos Martínez-A, Karel H M van Wely. Cell Cycle 2013
29
13

Whole-genome copy-number analysis identifies new leads for chromosomal aberrations involved in the oncogenesis and metastastic behavior of uveal melanomas.
Adriana C H van Engen-van Grunsven, Marjolein P Baar, Rolph Pfundt, Jos Rijntjes, Heidi V N Küsters-Vandevelde, Ann-Laure Delbecq, Jan E Keunen, Jeroen B Klevering, Pieter Wesseling, Willeke A M Blokx,[...]. Melanoma Res 2015
12
33

Characterization of uterine leiomyomas by whole-genome sequencing.
Miika Mehine, Eevi Kaasinen, Netta Mäkinen, Riku Katainen, Kati Kämpjärvi, Esa Pitkänen, Hanna-Riikka Heinonen, Ralf Bützow, Outi Kilpivaara, Anna Kuosmanen,[...]. N Engl J Med 2013
184
12

DNA copy number analysis of Grade II-III and Grade IV gliomas reveals differences in molecular ontogeny including chromothripsis associated with IDH mutation status.
Adam Cohen, Mariko Sato, Kenneth Aldape, Clinton C Mason, Kristin Alfaro-Munoz, Lindsey Heathcock, Sarah T South, Lisa M Abegglen, Joshua D Schiffman, Howard Colman. Acta Neuropathol Commun 2015
44
12

Cancer: When catastrophe strikes a cell.
Jose M C Tubio, Xavier Estivill. Nature 2011
50
12

Replication stress links structural and numerical cancer chromosomal instability.
Rebecca A Burrell, Sarah E McClelland, David Endesfelder, Petra Groth, Marie-Christine Weller, Nadeem Shaikh, Enric Domingo, Nnennaya Kanu, Sally M Dewhurst, Eva Gronroos,[...]. Nature 2013
466
12

Remarkable similarities of chromosomal rearrangements between primary human breast cancers and matched distant metastases as revealed by whole-genome sequencing.
Man-Hung Eric Tang, Malin Dahlgren, Christian Brueffer, Tamara Tjitrowirjo, Christof Winter, Yilun Chen, Eleonor Olsson, Kun Wang, Therese Törngren, Martin Sjöström,[...]. Oncotarget 2015
19
21

Pan-cancer patterns of somatic copy number alteration.
Travis I Zack, Stephen E Schumacher, Scott L Carter, Andre D Cherniack, Gordon Saksena, Barbara Tabak, Michael S Lawrence, Cheng-Zhong Zhsng, Jeremiah Wala, Craig H Mermel,[...]. Nat Genet 2013
986
12

CTLPScanner: a web server for chromothripsis-like pattern detection.
Jian Yang, Jixiang Liu, Liang Ouyang, Yi Chen, Bo Liu, Haoyang Cai. Nucleic Acids Res 2016
28
14

Genome chaos: survival strategy during crisis.
Guo Liu, Joshua B Stevens, Steven D Horne, Batoul Y Abdallah, Karen J Ye, Steven W Bremer, Christine J Ye, David J Chen, Henry H Heng. Cell Cycle 2014
63
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.