A citation-based method for searching scientific literature

Mary A Yui, Ellen V Rothenberg. Nat Rev Immunol 2014
Times Cited: 190







List of co-cited articles
1192 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A critical role for TCF-1 in T-lineage specification and differentiation.
Brittany Nicole Weber, Anthony Wei-Shine Chi, Alejandro Chavez, Yumi Yashiro-Ohtani, Qi Yang, Olga Shestova, Avinash Bhandoola. Nature 2011
249
24

The transcriptional landscape of αβ T cell differentiation.
Michael Mingueneau, Taras Kreslavsky, Daniel Gray, Tracy Heng, Richard Cruse, Jeffrey Ericson, Sean Bendall, Matthew H Spitzer, Garry P Nolan, Koichi Kobayashi,[...]. Nat Immunol 2013
179
22

Transformation of Accessible Chromatin and 3D Nucleome Underlies Lineage Commitment of Early T Cells.
Gangqing Hu, Kairong Cui, Difeng Fang, Satoshi Hirose, Xun Wang, Darawalee Wangsa, Wenfei Jin, Thomas Ried, Pentao Liu, Jinfang Zhu,[...]. Immunity 2018
80
27

Asynchronous combinatorial action of four regulatory factors activates Bcl11b for T cell commitment.
Hao Yuan Kueh, Mary A Yui, Kenneth K H Ng, Shirley S Pease, Jingli A Zhang, Sagar S Damle, George Freedman, Sharmayne Siu, Irwin D Bernstein, Michael B Elowitz,[...]. Nat Immunol 2016
83
25


Architecture of a lymphomyeloid developmental switch controlled by PU.1, Notch and Gata3.
Marissa Morales Del Real, Ellen V Rothenberg. Development 2013
61
31

Induction of T cell development from hematopoietic progenitor cells by delta-like-1 in vitro.
Thomas M Schmitt, Juan Carlos Zúñiga-Pflücker. Immunity 2002
828
19

T-cell factor 1 is a gatekeeper for T-cell specification in response to Notch signaling.
Kristine Germar, Marei Dose, Tassos Konstantinou, Jiangwen Zhang, Hongfang Wang, Camille Lobry, Kelly L Arnett, Stephen C Blacklow, Iannis Aifantis, Jon C Aster,[...]. Proc Natl Acad Sci U S A 2011
124
19

Lineage-Determining Transcription Factor TCF-1 Initiates the Epigenetic Identity of T Cells.
John L Johnson, Georgios Georgakilas, Jelena Petrovic, Makoto Kurachi, Stanley Cai, Christelle Harly, Warren S Pear, Avinash Bhandoola, E John Wherry, Golnaz Vahedi. Immunity 2018
94
20

Fine-scale staging of T cell lineage commitment in adult mouse thymus.
Mary A Yui, Ni Feng, Ellen V Rothenberg. J Immunol 2010
95
18

Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity.
Jingli A Zhang, Ali Mortazavi, Brian A Williams, Barbara J Wold, Ellen V Rothenberg. Cell 2012
236
17

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
17

Single-Cell Analysis Reveals Regulatory Gene Expression Dynamics Leading to Lineage Commitment in Early T Cell Development.
Wen Zhou, Mary A Yui, Brian A Williams, Jina Yun, Barbara J Wold, Long Cai, Ellen V Rothenberg. Cell Syst 2019
35
48

Transcription Factor PU.1 Represses and Activates Gene Expression in Early T Cells by Redirecting Partner Transcription Factor Binding.
Hiroyuki Hosokawa, Jonas Ungerbäck, Xun Wang, Masaki Matsumoto, Keiichi I Nakayama, Sarah M Cohen, Tomoaki Tanaka, Ellen V Rothenberg. Immunity 2018
48
33

Non-coding Transcription Instructs Chromatin Folding and Compartmentalization to Dictate Enhancer-Promoter Communication and T Cell Fate.
Takeshi Isoda, Amanda J Moore, Zhaoren He, Vivek Chandra, Masatoshi Aida, Matthew Denholtz, Jan Piet van Hamburg, Kathleen M Fisch, Aaron N Chang, Shawn P Fahl,[...]. Cell 2017
129
16



Launching the T-cell-lineage developmental programme.
Ellen V Rothenberg, Jonathan E Moore, Mary A Yui. Nat Rev Immunol 2008
297
15

Pioneering, chromatin remodeling, and epigenetic constraint in early T-cell gene regulation by SPI1 (PU.1).
Jonas Ungerbäck, Hiroyuki Hosokawa, Xun Wang, Tobias Strid, Brian A Williams, Mikael Sigvardsson, Ellen V Rothenberg. Genome Res 2018
26
57

An essential developmental checkpoint for production of the T cell lineage.
Tomokatsu Ikawa, Satoshi Hirose, Kyoko Masuda, Kiyokazu Kakugawa, Rumi Satoh, Asako Shibano-Satoh, Ryo Kominami, Yoshimoto Katsura, Hiroshi Kawamoto. Science 2010
214
14

GATA-3 dose-dependent checkpoints in early T cell commitment.
Deirdre D Scripture-Adams, Sagar S Damle, Long Li, Koorosh J Elihu, Shuyang Qin, Alexandra M Arias, Robert R Butler, Ameya Champhekar, Jingli A Zhang, Ellen V Rothenberg. J Immunol 2014
48
29

Bcl11b sets pro-T cell fate by site-specific cofactor recruitment and by repressing Id2 and Zbtb16.
Hiroyuki Hosokawa, Maile Romero-Wolf, Mary A Yui, Jonas Ungerbäck, Maria L G Quiloan, Masaki Matsumoto, Keiichi I Nakayama, Tomoaki Tanaka, Ellen V Rothenberg. Nat Immunol 2018
44
31

Bcl11b and combinatorial resolution of cell fate in the T-cell gene regulatory network.
William J R Longabaugh, Weihua Zeng, Jingli A Zhang, Hiroyuki Hosokawa, Camden S Jansen, Long Li, Maile Romero-Wolf, Pentao Liu, Hao Yuan Kueh, Ali Mortazavi,[...]. Proc Natl Acad Sci U S A 2017
48
27

Regulation of early T-lineage gene expression and developmental progression by the progenitor cell transcription factor PU.1.
Ameya Champhekar, Sagar S Damle, George Freedman, Sebastian Carotta, Stephen L Nutt, Ellen V Rothenberg. Genes Dev 2015
44
29

Transcriptional regulation of innate and adaptive lymphocyte lineages.
Maria Elena De Obaldia, Avinash Bhandoola. Annu Rev Immunol 2015
115
13

Notch/Delta signaling constrains reengineering of pro-T cells by PU.1.
Christopher B Franco, Deirdre D Scripture-Adams, Irina Proekt, Tom Taghon, Angela H Weiss, Mary A Yui, Stephanie L Adams, Rochelle A Diamond, Ellen V Rothenberg. Proc Natl Acad Sci U S A 2006
86
15

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
13

Deficient T cell fate specification in mice with an induced inactivation of Notch1.
F Radtke, A Wilson, G Stark, M Bauer, J van Meerwijk, H R MacDonald, M Aguet. Immunity 1999
13

Forging T-Lymphocyte Identity: Intersecting Networks of Transcriptional Control.
Ellen V Rothenberg, Jonas Ungerbäck, Ameya Champhekar. Adv Immunol 2016
43
30

A stochastic epigenetic switch controls the dynamics of T-cell lineage commitment.
Kenneth Kh Ng, Mary A Yui, Arnav Mehta, Sharmayne Siu, Blythe Irwin, Shirley Pease, Satoshi Hirose, Michael B Elowitz, Ellen V Rothenberg, Hao Yuan Kueh. Elife 2018
39
33

The cis-Regulatory Atlas of the Mouse Immune System.
Hideyuki Yoshida, Caleb A Lareau, Ricardo N Ramirez, Samuel A Rose, Barbara Maier, Aleksandra Wroblewska, Fiona Desland, Aleksey Chudnovskiy, Arthur Mortha, Claudia Dominguez,[...]. Cell 2019
136
13

A far downstream enhancer for murine Bcl11b controls its T-cell specific expression.
Long Li, Jingli A Zhang, Marei Dose, Hao Yuan Kueh, Ruzbeh Mosadeghi, Fotini Gounari, Ellen V Rothenberg. Blood 2013
86
13

Reprogramming of T cells to natural killer-like cells upon Bcl11b deletion.
Peng Li, Shannon Burke, Juexuan Wang, Xiongfeng Chen, Mariaestela Ortiz, Song-Choon Lee, Dong Lu, Lia Campos, David Goulding, Bee Ling Ng,[...]. Science 2010
227
12

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
12


How transcription factors drive choice of the T cell fate.
Hiroyuki Hosokawa, Ellen V Rothenberg. Nat Rev Immunol 2021
36
33

CCR7 and CCR9 together recruit hematopoietic progenitors to the adult thymus.
Daniel A Zlotoff, Arivazhagan Sambandam, Theodore D Logan, J Jeremiah Bell, Benjamin A Schwarz, Avinash Bhandoola. Blood 2010
162
11

GATA-3 promotes T-cell specification by repressing B-cell potential in pro-T cells in mice.
Marcos E García-Ojeda, Roel G J Klein Wolterink, Fabrice Lemaître, Odile Richard-Le Goff, Milena Hasan, Rudolf W Hendriks, Ana Cumano, James P Di Santo. Blood 2013
67
16

Core binding factors are necessary for natural killer cell development and cooperate with Notch signaling during T-cell specification.
Yalin Guo, Ivan Maillard, Sankhamala Chakraborti, Ellen V Rothenberg, Nancy A Speck. Blood 2008
56
19

Activating mutations of NOTCH1 in human T cell acute lymphoblastic leukemia.
Andrew P Weng, Adolfo A Ferrando, Woojoong Lee, John P Morris, Lewis B Silverman, Cheryll Sanchez-Irizarry, Stephen C Blacklow, A Thomas Look, Jon C Aster. Science 2004
11

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.
Jason D Buenrostro, Paul G Giresi, Lisa C Zaba, Howard Y Chang, William J Greenleaf. Nat Methods 2013
11

Cytokines, Transcription Factors, and the Initiation of T-Cell Development.
Hiroyuki Hosokawa, Ellen V Rothenberg. Cold Spring Harb Perspect Biol 2018
41
26

RBPJ-dependent Notch signaling initiates the T cell program in a subset of thymus-seeding progenitors.
Edward L Y Chen, Patrycja K Thompson, Juan Carlos Zúñiga-Pflücker. Nat Immunol 2019
29
37

Two waves of distinct hematopoietic progenitor cells colonize the fetal thymus.
Cyrille Ramond, Claire Berthault, Odile Burlen-Defranoux, Ana Pereira de Sousa, Delphine Guy-Grand, Paulo Vieira, Pablo Pereira, Ana Cumano. Nat Immunol 2014
55
18

GATA-3 is required for early T lineage progenitor development.
Tomonori Hosoya, Takashi Kuroha, Takashi Moriguchi, Dustin Cummings, Ivan Maillard, Kim-Chew Lim, James Douglas Engel. J Exp Med 2009
109
10

Adult T-cell progenitors retain myeloid potential.
Haruka Wada, Kyoko Masuda, Rumi Satoh, Kiyokazu Kakugawa, Tomokatsu Ikawa, Yoshimoto Katsura, Hiroshi Kawamoto. Nature 2008
253
10

Lymphoid cell growth and transformation are suppressed by a key regulatory element of the gene encoding PU.1.
Frank Rosenbauer, Bronwyn M Owens, Li Yu, Joseph R Tumang, Ulrich Steidl, Jeffery L Kutok, Linda K Clayton, Katharina Wagner, Marina Scheller, Hiromi Iwasaki,[...]. Nat Genet 2006
165
10

The genomic landscape of pediatric and young adult T-lineage acute lymphoblastic leukemia.
Yu Liu, John Easton, Ying Shao, Jamie Maciaszek, Zhaoming Wang, Mark R Wilkinson, Kelly McCastlain, Michael Edmonson, Stanley B Pounds, Lei Shi,[...]. Nat Genet 2017
392
10

Recurrent SPI1 (PU.1) fusions in high-risk pediatric T cell acute lymphoblastic leukemia.
Masafumi Seki, Shunsuke Kimura, Tomoya Isobe, Kenichi Yoshida, Hiroo Ueno, Yaeko Nakajima-Takagi, Changshan Wang, Lin Lin, Ayana Kon, Hiromichi Suzuki,[...]. Nat Genet 2017
70
14

Innate Lymphoid Cell Development: A T Cell Perspective.
Dylan E Cherrier, Nicolas Serafini, James P Di Santo. Immunity 2018
84
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.