A citation-based method for searching scientific literature

Nikita Vladimirov, Yu Mu, Takashi Kawashima, Davis V Bennett, Chao-Tsung Yang, Loren L Looger, Philipp J Keller, Jeremy Freeman, Misha B Ahrens. Nat Methods 2014
Times Cited: 146







List of co-cited articles
910 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Whole-brain functional imaging at cellular resolution using light-sheet microscopy.
Misha B Ahrens, Michael B Orger, Drew N Robson, Jennifer M Li, Philipp J Keller. Nat Methods 2013
646
48

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
37

Brain-wide neuronal dynamics during motor adaptation in zebrafish.
Misha B Ahrens, Jennifer M Li, Michael B Orger, Drew N Robson, Alexander F Schier, Florian Engert, Ruben Portugues. Nature 2012
359
31

Optical sectioning deep inside live embryos by selective plane illumination microscopy.
Jan Huisken, Jim Swoger, Filippo Del Bene, Joachim Wittbrodt, Ernst H K Stelzer. Science 2004
24

Whole-brain activity mapping onto a zebrafish brain atlas.
Owen Randlett, Caroline L Wee, Eva A Naumann, Onyeka Nnaemeka, David Schoppik, James E Fitzgerald, Ruben Portugues, Alix M B Lacoste, Clemens Riegler, Florian Engert,[...]. Nat Methods 2015
211
24

Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy.
Philipp J Keller, Annette D Schmidt, Joachim Wittbrodt, Ernst H K Stelzer. Science 2008
836
18

Mapping brain activity at scale with cluster computing.
Jeremy Freeman, Nikita Vladimirov, Takashi Kawashima, Yu Mu, Nicholas J Sofroniew, Davis V Bennett, Joshua Rosen, Chao-Tsung Yang, Loren L Looger, Misha B Ahrens. Nat Methods 2014
142
17

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
16

Fast functional imaging of multiple brain regions in intact zebrafish larvae using selective plane illumination microscopy.
Thomas Panier, Sebastián A Romano, Raphaël Olive, Thomas Pietri, Germán Sumbre, Raphaël Candelier, Georges Debrégeas. Front Neural Circuits 2013
121
16

Whole-brain activity maps reveal stereotyped, distributed networks for visuomotor behavior.
Ruben Portugues, Claudia E Feierstein, Florian Engert, Michael B Orger. Neuron 2014
148
16

Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy.
Robert Prevedel, Young-Gyu Yoon, Maximilian Hoffmann, Nikita Pak, Gordon Wetzstein, Saul Kato, Tina Schrödel, Ramesh Raskar, Manuel Zimmer, Edward S Boyden,[...]. Nat Methods 2014
299
14

Neural Circuits Underlying Visually Evoked Escapes in Larval Zebrafish.
Timothy W Dunn, Christoph Gebhardt, Eva A Naumann, Clemens Riegler, Misha B Ahrens, Florian Engert, Filippo Del Bene. Neuron 2016
156
14

Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion.
Timothy W Dunn, Yu Mu, Sujatha Narayan, Owen Randlett, Eva A Naumann, Chao-Tsung Yang, Alexander F Schier, Jeremy Freeman, Florian Engert, Misha B Ahrens. Elife 2016
119
14

The Serotonergic System Tracks the Outcomes of Actions to Mediate Short-Term Motor Learning.
Takashi Kawashima, Maarten F Zwart, Chao-Tsung Yang, Brett D Mensh, Misha B Ahrens. Cell 2016
58
24

Swept confocally-aligned planar excitation (SCAPE) microscopy for high speed volumetric imaging of behaving organisms.
Matthew B Bouchard, Venkatakaushik Voleti, César S Mendes, Clay Lacefield, Wesley B Grueber, Richard S Mann, Randy M Bruno, Elizabeth M C Hillman. Nat Photonics 2015
236
13

Whole-brain functional imaging with two-photon light-sheet microscopy.
Sébastien Wolf, Willy Supatto, Georges Debrégeas, Pierre Mahou, Sergei G Kruglik, Jean-Marc Sintes, Emmanuel Beaurepaire, Raphaël Candelier. Nat Methods 2015
67
19

Visuomotor transformations underlying hunting behavior in zebrafish.
Isaac H Bianco, Florian Engert. Curr Biol 2015
96
13

Optical mapping of neuronal activity during seizures in zebrafish.
L Turrini, C Fornetto, G Marchetto, M C Müllenbroich, N Tiso, A Vettori, F Resta, A Masi, G Mannaioni, F S Pavone,[...]. Sci Rep 2017
47
27

Deep and fast live imaging with two-photon scanned light-sheet microscopy.
Thai V Truong, Willy Supatto, David S Koos, John M Choi, Scott E Fraser. Nat Methods 2011
276
12

Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution.
Bi-Chang Chen, Wesley R Legant, Kai Wang, Lin Shao, Daniel E Milkie, Michael W Davidson, Chris Janetopoulos, Xufeng S Wu, John A Hammer, Zhe Liu,[...]. Science 2014
877
12

nacre encodes a zebrafish microphthalmia-related protein that regulates neural-crest-derived pigment cell fate.
J A Lister, C P Robertson, T Lepage, S L Johnson, D W Raible. Development 1999
533
12

From Whole-Brain Data to Functional Circuit Models: The Zebrafish Optomotor Response.
Eva A Naumann, James E Fitzgerald, Timothy W Dunn, Jason Rihel, Haim Sompolinsky, Florian Engert. Cell 2016
118
12

Rapid whole brain imaging of neural activity in freely behaving larval zebrafish (Danio rerio).
Lin Cong, Zeguan Wang, Yuming Chai, Wei Hang, Chunfeng Shang, Wenbin Yang, Lu Bai, Jiulin Du, Kai Wang, Quan Wen. Elife 2017
107
12

Transgenic tools to characterize neuronal properties of discrete populations of zebrafish neurons.
Chie Satou, Yukiko Kimura, Hiromi Hirata, Maximiliano L Suster, Koichi Kawakami, Shin-ichi Higashijima. Development 2013
108
11


Prey capture behavior evoked by simple visual stimuli in larval zebrafish.
Isaac H Bianco, Adam R Kampff, Florian Engert. Front Syst Neurosci 2011
139
10


Pan-neuronal calcium imaging with cellular resolution in freely swimming zebrafish.
Dal Hyung Kim, Jungsoo Kim, João C Marques, Abhinav Grama, David G C Hildebrand, Wenchao Gu, Jennifer M Li, Drew N Robson. Nat Methods 2017
86
11

Neuronal Dynamics Regulating Brain and Behavioral State Transitions.
Aaron S Andalman, Vanessa M Burns, Matthew Lovett-Barron, Michael Broxton, Ben Poole, Samuel J Yang, Logan Grosenick, Talia N Lerner, Ritchie Chen, Tyler Benster,[...]. Cell 2019
76
13

Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.
Hans-Ulrich Dodt, Ulrich Leischner, Anja Schierloh, Nina Jährling, Christoph Peter Mauch, Katrin Deininger, Jan Michael Deussing, Matthias Eder, Walter Zieglgänsberger, Klaus Becker. Nat Methods 2007
718
9

Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy.
Philipp J Keller, Annette D Schmidt, Anthony Santella, Khaled Khairy, Zhirong Bao, Joachim Wittbrodt, Ernst H K Stelzer. Nat Methods 2010
316
9

Scanned light sheet microscopy with confocal slit detection.
Eugen Baumgart, Ulrich Kubitscheck. Opt Express 2012
113
9

Rapid 3D light-sheet microscopy with a tunable lens.
Florian O Fahrbach, Fabian F Voigt, Benjamin Schmid, Fritjof Helmchen, Jan Huisken. Opt Express 2013
157
9

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy.
Raju Tomer, Khaled Khairy, Fernando Amat, Philipp J Keller. Nat Methods 2012
294
9

Whole-central nervous system functional imaging in larval Drosophila.
William C Lemon, Stefan R Pulver, Burkhard Höckendorf, Katie McDole, Kristin Branson, Jeremy Freeman, Philipp J Keller. Nat Commun 2015
105
9

A dedicated visual pathway for prey detection in larval zebrafish.
Julia L Semmelhack, Joseph C Donovan, Tod R Thiele, Enrico Kuehn, Eva Laurell, Herwig Baier. Elife 2014
95
9

A Visual Pathway for Looming-Evoked Escape in Larval Zebrafish.
Incinur Temizer, Joseph C Donovan, Herwig Baier, Julia L Semmelhack. Curr Biol 2015
118
9

Spontaneous activity governs olfactory representations in spatially organized habenular microcircuits.
Suresh Kumar Jetti, Nuria Vendrell-Llopis, Emre Yaksi. Curr Biol 2014
57
15

Ancestral Circuits for the Coordinated Modulation of Brain State.
Matthew Lovett-Barron, Aaron S Andalman, William E Allen, Sam Vesuna, Isaac Kauvar, Vanessa M Burns, Karl Deisseroth. Cell 2017
78
11

Glia-neuron interactions underlie state transitions to generalized seizures.
Carmen Diaz Verdugo, Sverre Myren-Svelstad, Ecem Aydin, Evelien Van Hoeymissen, Celine Deneubourg, Silke Vanderhaeghe, Julie Vancraeynest, Robbrecht Pelgrims, Mehmet Ilyas Cosacak, Akira Muto,[...]. Nat Commun 2019
43
20

Analysis of upstream elements in the HuC promoter leads to the establishment of transgenic zebrafish with fluorescent neurons.
H C Park, C H Kim, Y K Bae, S Y Yeo, S H Kim, S K Hong, J Shin, K W Yoo, M Hibi, T Hirano,[...]. Dev Biol 2000
292
8

Calcium imaging of neural circuits with extended depth-of-field light-sheet microscopy.
Sean Quirin, Nikita Vladimirov, Chao-Tsung Yang, Darcy S Peterka, Rafael Yuste, Misha B Ahrens. Opt Lett 2016
36
22

Light-sheet microscopy using an Airy beam.
Tom Vettenburg, Heather I C Dalgarno, Jonathan Nylk, Clara Coll-Lladó, David E K Ferrier, Tomáš Čižmár, Frank J Gunn-Moore, Kishan Dholakia. Nat Methods 2014
257
8

Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms.
Loïc A Royer, William C Lemon, Raghav K Chhetri, Yinan Wan, Michael Coleman, Eugene W Myers, Philipp J Keller. Nat Biotechnol 2016
109
8

SPED Light Sheet Microscopy: Fast Mapping of Biological System Structure and Function.
Raju Tomer, Matthew Lovett-Barron, Isaac Kauvar, Aaron Andalman, Vanessa M Burns, Sethuraman Sankaran, Logan Grosenick, Michael Broxton, Samuel Yang, Karl Deisseroth. Cell 2015
115
8

Ontogeny of classical and operant learning behaviors in zebrafish.
André Valente, Kuo-Hua Huang, Ruben Portugues, Florian Engert. Learn Mem 2012
90
8






Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.