A citation-based method for searching scientific literature

Andrew L Wolfe, Kamini Singh, Yi Zhong, Philipp Drewe, Vinagolu K Rajasekhar, Viraj R Sanghvi, Konstantinos J Mavrakis, Man Jiang, Justine E Roderick, Joni Van der Meulen, Jonathan H Schatz, Christina M Rodrigo, Chunying Zhao, Pieter Rondou, Elisa de Stanchina, Julie Teruya-Feldstein, Michelle A Kelliher, Frank Speleman, John A Porco, Jerry Pelletier, Gunnar Rätsch, Hans-Guido Wendel. Nature 2014
Times Cited: 344







List of co-cited articles
1265 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transcriptome-wide characterization of the eIF4A signature highlights plasticity in translation regulation.
Claudia A Rubio, Benjamin Weisburd, Matthew Holderfield, Carolina Arias, Eric Fang, Joseph L DeRisi, Abdallah Fanidi. Genome Biol 2014
111
25


rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome.
Chun Kit Kwok, Giovanni Marsico, Aleksandr B Sahakyan, Vicki S Chambers, Shankar Balasubramanian. Nat Methods 2016
186
20

Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells.
Giulia Biffi, Marco Di Antonio, David Tannahill, Shankar Balasubramanian. Nat Chem 2014
350
19

An RNA G-quadruplex in the 5' UTR of the NRAS proto-oncogene modulates translation.
Sunita Kumari, Anthony Bugaut, Julian L Huppert, Shankar Balasubramanian. Nat Chem Biol 2007
517
18

Therapeutic suppression of translation initiation modulates chemosensitivity in a mouse lymphoma model.
Marie-Eve Bordeleau, Francis Robert, Baudouin Gerard, Lisa Lindqvist, Samuel M H Chen, Hans-Guido Wendel, Brigitte Brem, Harald Greger, Scott W Lowe, John A Porco,[...]. J Clin Invest 2008
230
18

Targeting the translation machinery in cancer.
Mamatha Bhat, Nathaniel Robichaud, Laura Hulea, Nahum Sonenberg, Jerry Pelletier, Ivan Topisirovic. Nat Rev Drug Discov 2015
448
17

High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
574
16

eIF4A supports an oncogenic translation program in pancreatic ductal adenocarcinoma.
Karina Chan, Francis Robert, Christian Oertlin, Dana Kapeller-Libermann, Daina Avizonis, Johana Gutierrez, Abram Handly-Santana, Mikhail Doubrovin, Julia Park, Christina Schoepfer,[...]. Nat Commun 2019
32
50

G-quadruplexes: the beginning and end of UTRs.
Julian Leon Huppert, Anthony Bugaut, Sunita Kumari, Shankar Balasubramanian. Nucleic Acids Res 2008
284
16

The Translation Inhibitor Rocaglamide Targets a Bimolecular Cavity between eIF4A and Polypurine RNA.
Shintaro Iwasaki, Wakana Iwasaki, Mari Takahashi, Ayako Sakamoto, Chiduru Watanabe, Yuichi Shichino, Stephen N Floor, Koichi Fujiwara, Mari Mito, Kosuke Dodo,[...]. Mol Cell 2019
63
23

The mechanism of eukaryotic translation initiation and principles of its regulation.
Richard J Jackson, Christopher U T Hellen, Tatyana V Pestova. Nat Rev Mol Cell Biol 2010
15

The malignant phenotype in breast cancer is driven by eIF4A1-mediated changes in the translational landscape.
A Modelska, E Turro, R Russell, J Beaton, T Sbarrato, K Spriggs, J Miller, S Gräf, E Provenzano, F Blows,[...]. Cell Death Dis 2015
87
17

Rocaglates convert DEAD-box protein eIF4A into a sequence-selective translational repressor.
Shintaro Iwasaki, Stephen N Floor, Nicholas T Ingolia. Nature 2016
138
14

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
13

RNA G-Quadruplexes in Biology: Principles and Molecular Mechanisms.
Marta M Fay, Shawn M Lyons, Pavel Ivanov. J Mol Biol 2017
185
13

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
13

Helix formation by guanylic acid.
M GELLERT, M N LIPSETT, D R DAVIES. Proc Natl Acad Sci U S A 1962
12

CRISPR-Mediated Drug-Target Validation Reveals Selective Pharmacological Inhibition of the RNA Helicase, eIF4A.
Jennifer Chu, Gabriela Galicia-Vázquez, Regina Cencic, John R Mills, Alexandra Katigbak, John A Porco, Jerry Pelletier. Cell Rep 2016
57
21

DHX36 prevents the accumulation of translationally inactive mRNAs with G4-structures in untranslated regions.
Markus Sauer, Stefan A Juranek, James Marks, Alessio De Magis, Hinke G Kazemier, Daniel Hilbig, Daniel Benhalevy, Xiantao Wang, Markus Hafner, Katrin Paeschke. Nat Commun 2019
53
22

G-quadruplex structures mark human regulatory chromatin.
Robert Hänsel-Hertsch, Dario Beraldi, Stefanie V Lensing, Giovanni Marsico, Katherine Zyner, Aled Parry, Marco Di Antonio, Jeremy Pike, Hiroshi Kimura, Masashi Narita,[...]. Nat Genet 2016
382
12

C9orf72 nucleotide repeat structures initiate molecular cascades of disease.
Aaron R Haeusler, Christopher J Donnelly, Goran Periz, Eric A J Simko, Patrick G Shaw, Min-Sik Kim, Nicholas J Maragakis, Juan C Troncoso, Akhilesh Pandey, Rita Sattler,[...]. Nature 2014
569
11

Analysis of NRAS RNA G-quadruplex binding proteins reveals DDX3X as a novel interactor of cellular G-quadruplex containing transcripts.
Barbara Herdy, Clemens Mayer, Dhaval Varshney, Giovanni Marsico, Pierre Murat, Chris Taylor, Clive D'Santos, David Tannahill, Shankar Balasubramanian. Nucleic Acids Res 2018
62
17

Quadruplex DNA: sequence, topology and structure.
Sarah Burge, Gary N Parkinson, Pascale Hazel, Alan K Todd, Stephen Neidle. Nucleic Acids Res 2006
11

Transcriptome-wide identification of transient RNA G-quadruplexes in human cells.
Sunny Y Yang, Pauline Lejault, Sandy Chevrier, Romain Boidot, A Gordon Robertson, Judy M Y Wong, David Monchaud. Nat Commun 2018
94
11

Evidence for a functionally relevant rocaglamide binding site on the eIF4A-RNA complex.
Heather Sadlish, Gabriela Galicia-Vazquez, C Gregory Paris, Thomas Aust, Bhupinder Bhullar, Lena Chang, Stephen B Helliwell, Dominic Hoepfner, Britta Knapp, Ralph Riedl,[...]. ACS Chem Biol 2013
72
15

RNA G-quadruplexes at upstream open reading frames cause DHX36- and DHX9-dependent translation of human mRNAs.
Pierre Murat, Giovanni Marsico, Barbara Herdy, Avazeh T Ghanbarian, Guillem Portella, Shankar Balasubramanian. Genome Biol 2018
58
18

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
11


Differential Requirements for eIF4E Dose in Normal Development and Cancer.
Morgan L Truitt, Crystal S Conn, Zhen Shi, Xiaming Pang, Taku Tokuyasu, Alison M Coady, Youngho Seo, Maria Barna, Davide Ruggero. Cell 2015
195
11

Design of Development Candidate eFT226, a First in Class Inhibitor of Eukaryotic Initiation Factor 4A RNA Helicase.
Justin T Ernst, Peggy A Thompson, Christian Nilewski, Paul A Sprengeler, Samuel Sperry, Garrick Packard, Theodore Michels, Alan Xiang, Chinh Tran, Christopher J Wegerski,[...]. J Med Chem 2020
33
33

The regulation and functions of DNA and RNA G-quadruplexes.
Dhaval Varshney, Jochen Spiegel, Katherine Zyner, David Tannahill, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2020
217
11

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
11

G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
840
10

The Human CCHC-type Zinc Finger Nucleic Acid-Binding Protein Binds G-Rich Elements in Target mRNA Coding Sequences and Promotes Translation.
Daniel Benhalevy, Sanjay K Gupta, Charles H Danan, Suman Ghosal, Hong-Wei Sun, Hinke G Kazemier, Katrin Paeschke, Markus Hafner, Stefan A Juranek. Cell Rep 2017
61
16

RNA G-quadruplex secondary structure promotes alternative splicing via the RNA-binding protein hnRNPF.
Huilin Huang, Jing Zhang, Samuel E Harvey, Xiaohui Hu, Chonghui Cheng. Genes Dev 2017
80
12

Rocaglamide, silvestrol and structurally related bioactive compounds from Aglaia species.
Li Pan, John L Woodard, David M Lucas, James R Fuchs, A Douglas Kinghorn. Nat Prod Rep 2014
71
14

Antitumor activity and mechanism of action of the cyclopenta[b]benzofuran, silvestrol.
Regina Cencic, Marilyn Carrier, Gabriela Galicia-Vázquez, Marie-Eve Bordeleau, Rami Sukarieh, Annie Bourdeau, Brigitte Brem, Jose G Teodoro, Harald Greger, Michel L Tremblay,[...]. PLoS One 2009
200
10

Amidino-Rocaglates: A Potent Class of eIF4A Inhibitors.
Jennifer Chu, Wenhan Zhang, Regina Cencic, William G Devine, Dmitri Beglov, Thomas Henkel, Lauren E Brown, Sandor Vajda, John A Porco, Jerry Pelletier. Cell Chem Biol 2019
25
40

Synthesis of rocaglamide hydroxamates and related compounds as eukaryotic translation inhibitors: synthetic and biological studies.
Christina M Rodrigo, Regina Cencic, Stéphane P Roche, Jerry Pelletier, John A Porco. J Med Chem 2012
64
15

The translational landscape of mTOR signalling steers cancer initiation and metastasis.
Andrew C Hsieh, Yi Liu, Merritt P Edlind, Nicholas T Ingolia, Matthew R Janes, Annie Sher, Evan Y Shi, Craig R Stumpf, Carly Christensen, Michael J Bonham,[...]. Nature 2012
829
10

Whole genome experimental maps of DNA G-quadruplexes in multiple species.
Giovanni Marsico, Vicki S Chambers, Aleksandr B Sahakyan, Patrick McCauley, Jonathan M Boutell, Marco Di Antonio, Shankar Balasubramanian. Nucleic Acids Res 2019
120
10

Global quantification of mammalian gene expression control.
Björn Schwanhäusser, Dorothea Busse, Na Li, Gunnar Dittmar, Johannes Schuchhardt, Jana Wolf, Wei Chen, Matthias Selbach. Nature 2011
10

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?
Shankar Balasubramanian, Laurence H Hurley, Stephen Neidle. Nat Rev Drug Discov 2011
10

An RNA G-quadruplex is essential for cap-independent translation initiation in human VEGF IRES.
Mark J Morris, Yoichi Negishi, Cathy Pazsint, Joseph D Schonhoft, Soumitra Basu. J Am Chem Soc 2010
139
9

G-quadruplex RNA structure as a signal for neurite mRNA targeting.
Murugan Subramanian, Florence Rage, Ricardos Tabet, Eric Flatter, Jean-Louis Mandel, Hervé Moine. EMBO Rep 2011
156
9


Detecting RNA G-Quadruplexes (rG4s) in the Transcriptome.
Chun Kit Kwok, Giovanni Marsico, Shankar Balasubramanian. Cold Spring Harb Perspect Biol 2018
51
17


Functional 5' UTR mRNA structures in eukaryotic translation regulation and how to find them.
Kathrin Leppek, Rhiju Das, Maria Barna. Nat Rev Mol Cell Biol 2018
275
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.