A citation-based method for searching scientific literature

Katie Lunnon, Rebecca Smith, Eilis Hannon, Philip L De Jager, Gyan Srivastava, Manuela Volta, Claire Troakes, Safa Al-Sarraj, Joe Burrage, Ruby Macdonald, Daniel Condliffe, Lorna W Harries, Pavel Katsel, Vahram Haroutunian, Zachary Kaminsky, Catharine Joachim, John Powell, Simon Lovestone, David A Bennett, Leonard C Schalkwyk, Jonathan Mill. Nat Neurosci 2014
Times Cited: 278







List of co-cited articles
1005 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci.
Philip L De Jager, Gyan Srivastava, Katie Lunnon, Jeremy Burgess, Leonard C Schalkwyk, Lei Yu, Matthew L Eaton, Brendan T Keenan, Jason Ernst, Cristin McCabe,[...]. Nat Neurosci 2014
452
79

Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.
J C Lambert, C A Ibrahim-Verbaas, D Harold, A C Naj, R Sims, C Bellenguez, A L DeStafano, J C Bis, G W Beecham, B Grenier-Boley,[...]. Nat Genet 2013
26

DNA methylation analysis on purified neurons and glia dissects age and Alzheimer's disease-specific changes in the human cortex.
Gilles Gasparoni, Sebastian Bultmann, Pavlo Lutsik, Theo F J Kraus, Sabrina Sordon, Julia Vlcek, Vanessa Dietinger, Martina Steinmaurer, Melanie Haider, Christopher B Mulholland,[...]. Epigenetics Chromatin 2018
61
40

Elevated DNA methylation across a 48-kb region spanning the HOXA gene cluster is associated with Alzheimer's disease neuropathology.
Rebecca G Smith, Eilis Hannon, Philip L De Jager, Lori Chibnik, Simon J Lott, Daniel Condliffe, Adam R Smith, Vahram Haroutunian, Claire Troakes, Safa Al-Sarraj,[...]. Alzheimers Dement 2018
41
58

Genome-wide DNA methylation profiling in the superior temporal gyrus reveals epigenetic signatures associated with Alzheimer's disease.
Corey T Watson, Panos Roussos, Paras Garg, Daniel J Ho, Nidha Azam, Pavel L Katsel, Vahram Haroutunian, Andrew J Sharp. Genome Med 2016
87
27

Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing.
Brian W Kunkle, Benjamin Grenier-Boley, Rebecca Sims, Joshua C Bis, Vincent Damotte, Adam C Naj, Anne Boland, Maria Vronskaya, Sven J van der Lee, Alexandre Amlie-Wolf,[...]. Nat Genet 2019
562
21

Parallel profiling of DNA methylation and hydroxymethylation highlights neuropathology-associated epigenetic variation in Alzheimer's disease.
Adam R Smith, Rebecca G Smith, Ehsan Pishva, Eilis Hannon, Janou A Y Roubroeks, Joe Burrage, Claire Troakes, Safa Al-Sarraj, Carolyn Sloan, Jonathan Mill,[...]. Clin Epigenetics 2019
31
67

Association of Brain DNA methylation in SORL1, ABCA7, HLA-DRB5, SLC24A4, and BIN1 with pathological diagnosis of Alzheimer disease.
Lei Yu, Lori B Chibnik, Gyan P Srivastava, Nathalie Pochet, Jingyun Yang, Jishu Xu, James Kozubek, Nikolaus Obholzer, Sue E Leurgans, Julie A Schneider,[...]. JAMA Neurol 2015
141
20



A data-driven approach to preprocessing Illumina 450K methylation array data.
Ruth Pidsley, Chloe C Y Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C Schalkwyk. BMC Genomics 2013
482
18

Genome-wide DNA methylation differences between late-onset Alzheimer's disease and cognitively normal controls in human frontal cortex.
Kelly M Bakulski, Dana C Dolinoy, Maureen A Sartor, Henry L Paulson, John R Konen, Andrew P Lieberman, Roger L Albin, Howard Hu, Laura S Rozek. J Alzheimers Dis 2012
152
17

Increased DNA methylation near TREM2 is consistently seen in the superior temporal gyrus in Alzheimer's disease brain.
Adam R Smith, Rebecca G Smith, Daniel Condliffe, Eilis Hannon, Leonard Schalkwyk, Jonathan Mill, Katie Lunnon. Neurobiol Aging 2016
47
29

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
14

Epigenome-wide study uncovers large-scale changes in histone acetylation driven by tau pathology in aging and Alzheimer's human brains.
Hans-Ulrich Klein, Cristin McCabe, Elizabeta Gjoneska, Sarah E Sullivan, Belinda J Kaskow, Anna Tang, Robert V Smith, Jishu Xu, Andreas R Pfenning, Bradley E Bernstein,[...]. Nat Neurosci 2019
56
25

A cross-brain regions study of ANK1 DNA methylation in different neurodegenerative diseases.
Adam R Smith, Rebecca G Smith, Joe Burrage, Claire Troakes, Safa Al-Sarraj, Rajesh N Kalaria, Carolyn Sloan, Andrew C Robinson, Jonathan Mill, Katie Lunnon. Neurobiol Aging 2019
21
61

A histone acetylome-wide association study of Alzheimer's disease identifies disease-associated H3K27ac differences in the entorhinal cortex.
Sarah J Marzi, Szi Kay Leung, Teodora Ribarska, Eilis Hannon, Adam R Smith, Ehsan Pishva, Jeremie Poschmann, Karen Moore, Claire Troakes, Safa Al-Sarraj,[...]. Nat Neurosci 2018
46
28

A genome-wide profiling of brain DNA hydroxymethylation in Alzheimer's disease.
Jinying Zhao, Yun Zhu, Jingyun Yang, Lin Li, Hao Wu, Philip L De Jager, Peng Jin, David A Bennett. Alzheimers Dement 2017
42
30

Neuropathological stageing of Alzheimer-related changes.
H Braak, E Braak. Acta Neuropathol 1991
12

Consistent decrease in global DNA methylation and hydroxymethylation in the hippocampus of Alzheimer's disease patients.
Leonidas Chouliaras, Diego Mastroeni, Elaine Delvaux, Andrew Grover, Gunter Kenis, Patrick R Hof, Harry W M Steinbusch, Paul D Coleman, Bart P F Rutten, Daniel L A van den Hove. Neurobiol Aging 2013
232
12

Epigenetic Alterations in Alzheimer's Disease.
Jose V Sanchez-Mut, Johannes Gräff. Front Behav Neurosci 2015
81
13

The APOE Gene is Differentially Methylated in Alzheimer's Disease.
Jessica Foraker, Steven P Millard, Lesley Leong, Zachary Thomson, Sunny Chen, C Dirk Keene, Lynn M Bekris, Chang-En Yu. J Alzheimers Dis 2015
48
22

Epigenetics and DNA methylomic profiling in Alzheimer's disease and other neurodegenerative diseases.
Janou A Y Roubroeks, Rebecca G Smith, Daniel L A van den Hove, Katie Lunnon. J Neurochem 2017
39
28


Altered CpG methylation in sporadic Alzheimer's disease is associated with APP and MAPT dysregulation.
Atsushi Iwata, Kenichi Nagata, Hiroyuki Hatsuta, Hiroshi Takuma, Miki Bundo, Kazuya Iwamoto, Akira Tamaoka, Shigeo Murayama, Takaomi Saido, Shoji Tsuji. Hum Mol Genet 2014
76
14

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
11

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray.
Yi-an Chen, Mathieu Lemire, Sanaa Choufani, Darci T Butcher, Daria Grafodatskaya, Brent W Zanke, Steven Gallinger, Thomas J Hudson, Rosanna Weksberg. Epigenetics 2013
801
11

Alzheimer's disease-associated (hydroxy)methylomic changes in the brain and blood.
Roy Lardenoije, Janou A Y Roubroeks, Ehsan Pishva, Markus Leber, Holger Wagner, Artemis Iatrou, Adam R Smith, Rebecca G Smith, Lars M T Eijssen, Luca Kleineidam,[...]. Clin Epigenetics 2019
21
52


Global changes in DNA methylation and hydroxymethylation in Alzheimer's disease human brain.
Natacha Coppieters, Birger V Dieriks, Claire Lill, Richard L M Faull, Maurice A Curtis, Mike Dragunow. Neurobiol Aging 2014
192
10

Age-specific epigenetic drift in late-onset Alzheimer's disease.
Sun-Chong Wang, Beatrice Oelze, Axel Schumacher. PLoS One 2008
278
10

An epigenetic blockade of cognitive functions in the neurodegenerating brain.
Johannes Gräff, Damien Rei, Ji-Song Guan, Wen-Yuan Wang, Jinsoo Seo, Krista M Hennig, Thomas J F Nieland, Daniel M Fass, Patricia F Kao, Martin Kahn,[...]. Nature 2012
490
10

Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.
Iris E Jansen, Jeanne E Savage, Kyoko Watanabe, Julien Bryois, Dylan M Williams, Stacy Steinberg, Julia Sealock, Ida K Karlsson, Sara Hägg, Lavinia Athanasiu,[...]. Nat Genet 2019
462
10

ANK1 is up-regulated in laser captured microglia in Alzheimer's brain; the importance of addressing cellular heterogeneity.
Diego Mastroeni, Shobana Sekar, Jennifer Nolz, Elaine Delvaux, Katie Lunnon, Jonathan Mill, Winnie S Liang, Paul D Coleman. PLoS One 2017
22
40

Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease.
Bin Zhang, Chris Gaiteri, Liviu-Gabriel Bodea, Zhi Wang, Joshua McElwee, Alexei A Podtelezhnikov, Chunsheng Zhang, Tao Xie, Linh Tran, Radu Dobrin,[...]. Cell 2013
855
9

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
9

Dysregulation of the epigenetic landscape of normal aging in Alzheimer's disease.
Raffaella Nativio, Greg Donahue, Amit Berson, Yemin Lan, Alexandre Amlie-Wolf, Ferit Tuzer, Jon B Toledo, Sager J Gosai, Brian D Gregory, Claudio Torres,[...]. Nat Neurosci 2018
86
10


The epigenetic landscape of Alzheimer's disease.
Jenny Lord, Carlos Cruchaga. Nat Neurosci 2014
64
14

Epigenetic modifications in frontal cortex from Alzheimer's disease and bipolar disorder patients.
J S Rao, V L Keleshian, S Klein, S I Rapoport. Transl Psychiatry 2012
178
9

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.
Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A Kibbe, Lifang Hou, Simon M Lin. BMC Bioinformatics 2010
967
9

Mapping DNA methylation across development, genotype and schizophrenia in the human frontal cortex.
Andrew E Jaffe, Yuan Gao, Amy Deep-Soboslay, Ran Tao, Thomas M Hyde, Daniel R Weinberger, Joel E Kleinman. Nat Neurosci 2016
232
9

Gene dose of apolipoprotein E type 4 allele and the risk of Alzheimer's disease in late onset families.
E H Corder, A M Saunders, W J Strittmatter, D E Schmechel, P C Gaskell, G W Small, A D Roses, J L Haines, M A Pericak-Vance. Science 1993
9

Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values.
Brent S Pedersen, David A Schwartz, Ivana V Yang, Katerina J Kechris. Bioinformatics 2012
174
9

Single-Base Resolution Mapping of 5-Hydroxymethylcytosine Modifications in Hippocampus of Alzheimer's Disease Subjects.
Elizabeth M Ellison, Melissa A Bradley-Whitman, Mark A Lovell. J Mol Neurosci 2017
17
52

Alzheimer's loci: epigenetic associations and interaction with genetic factors.
Lori B Chibnik, Lei Yu, Matthew L Eaton, Gyan Srivastava, Julie A Schneider, Manolis Kellis, David A Bennett, Philip L De Jager. Ann Clin Transl Neurol 2015
36
25


Methylation profiles in peripheral blood CD4+ lymphocytes versus brain: The relation to Alzheimer's disease pathology.
Lei Yu, Lori B Chibnik, Jingyun Yang, Cristin McCabe, Jishu Xu, Julie A Schneider, Philip L De Jager, David A Bennett. Alzheimers Dement 2016
25
36

DNA methylation changes at TREM2 intron 1 and TREM2 mRNA expression in patients with Alzheimer's disease.
Yuki Ozaki, Yuta Yoshino, Kiyohiro Yamazaki, Tomoko Sao, Yoko Mori, Shinichiro Ochi, Taku Yoshida, Takaaki Mori, Jun-Ichi Iga, Shu-Ichi Ueno. J Psychiatr Res 2017
39
20

An integrated genetic-epigenetic analysis of schizophrenia: evidence for co-localization of genetic associations and differential DNA methylation.
Eilis Hannon, Emma Dempster, Joana Viana, Joe Burrage, Adam R Smith, Ruby Macdonald, David St Clair, Colette Mustard, Gerome Breen, Sebastian Therman,[...]. Genome Biol 2016
142
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.