A citation-based method for searching scientific literature

Simran Khurana, Michael J Kruhlak, Jeongkyu Kim, Andy D Tran, Jinping Liu, Katherine Nyswaner, Lei Shi, Parthav Jailwala, Myong-Hee Sung, Ofir Hakim, Philipp Oberdoerffer. Cell Rep 2014
Times Cited: 137







List of co-cited articles
1726 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The DNA-damage response in human biology and disease.
Stephen P Jackson, Jiri Bartek. Nature 2009
32

A macrodomain-containing histone rearranges chromatin upon sensing PARP1 activation.
Gyula Timinszky, Susanne Till, Paul O Hassa, Michael Hothorn, Georg Kustatscher, Bianca Nijmeijer, Julien Colombelli, Matthias Altmeyer, Ernst H K Stelzer, Klaus Scheffzek,[...]. Nat Struct Mol Biol 2009
323
32

DNA double-strand breaks promote methylation of histone H3 on lysine 9 and transient formation of repressive chromatin.
Marina K Ayrapetov, Ozge Gursoy-Yuzugullu, Chang Xu, Ye Xu, Brendan D Price. Proc Natl Acad Sci U S A 2014
212
29

Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks.
François Aymard, Beatrix Bugler, Christine K Schmidt, Emmanuelle Guillou, Pierre Caron, Sébastien Briois, Jason S Iacovoni, Virginie Daburon, Kyle M Miller, Stephen P Jackson,[...]. Nat Struct Mol Biol 2014
365
28

Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination.
Jiangbo Tang, Nam Woo Cho, Gaofeng Cui, Erica M Manion, Niraj M Shanbhag, Maria Victoria Botuyan, Georges Mer, Roger A Greenberg. Nat Struct Mol Biol 2013
327
28

53BP1 is a reader of the DNA-damage-induced H2A Lys 15 ubiquitin mark.
Amélie Fradet-Turcotte, Marella D Canny, Cristina Escribano-Díaz, Alexandre Orthwein, Charles C Y Leung, Hao Huang, Marie-Claude Landry, Julianne Kitevski-LeBlanc, Sylvie M Noordermeer, Frank Sicheri,[...]. Nature 2013
432
27

The DNA damage response: making it safe to play with knives.
Alberto Ciccia, Stephen J Elledge. Mol Cell 2010
26

DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139.
E P Rogakou, D R Pilch, A H Orr, V S Ivanova, W M Bonner. J Biol Chem 1998
25

PARP1 Links CHD2-Mediated Chromatin Expansion and H3.3 Deposition to DNA Repair by Non-homologous End-Joining.
Martijn S Luijsterburg, Inge de Krijger, Wouter W Wiegant, Rashmi G Shah, Godelieve Smeenk, Anton J L de Groot, Alex Pines, Alfred C O Vertegaal, Jacqueline J L Jacobs, Girish M Shah,[...]. Mol Cell 2016
152
24

Activation of DNA damage response signaling by condensed chromatin.
Rebecca C Burgess, Bharat Burman, Michael J Kruhlak, Tom Misteli. Cell Rep 2014
114
23

Screen identifies bromodomain protein ZMYND8 in chromatin recognition of transcription-associated DNA damage that promotes homologous recombination.
Fade Gong, Li-Ya Chiu, Ben Cox, François Aymard, Thomas Clouaire, Justin W Leung, Michael Cammarata, Mercedes Perez, Poonam Agarwal, Jennifer S Brodbelt,[...]. Genes Dev 2015
144
23

Histone H2A.Z controls a critical chromatin remodeling step required for DNA double-strand break repair.
Ye Xu, Marina K Ayrapetov, Chang Xu, Ozge Gursoy-Yuzugullu, Yiduo Hu, Brendan D Price. Mol Cell 2012
200
23

ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks.
Niraj M Shanbhag, Ilona U Rafalska-Metcalf, Carlo Balane-Bolivar, Susan M Janicki, Roger A Greenberg. Cell 2010
481
22

RNF168 ubiquitinates K13-15 on H2A/H2AX to drive DNA damage signaling.
Francesca Mattiroli, Joseph H A Vissers, Willem J van Dijk, Pauline Ikpa, Elisabetta Citterio, Wim Vermeulen, Jurgen A Marteijn, Titia K Sixma. Cell 2012
401
22

The histone variant macroH2A1.1 is recruited to DSBs through a mechanism involving PARP1.
Chang Xu, Ye Xu, Ozge Gursoy-Yuzugullu, Brendan D Price. FEBS Lett 2012
51
41

Replication Stress Shapes a Protective Chromatin Environment across Fragile Genomic Regions.
Jeongkyu Kim, David Sturgill, Robin Sebastian, Simran Khurana, Andy D Tran, Garrett B Edwards, Alex Kruswick, Sandra Burkett, Eri K Hosogane, William W Hannon,[...]. Mol Cell 2018
52
40

A chromatin localization screen reveals poly (ADP ribose)-regulated recruitment of the repressive polycomb and NuRD complexes to sites of DNA damage.
Danny M Chou, Britt Adamson, Noah E Dephoure, Xu Tan, Amanda C Nottke, Kristen E Hurov, Steven P Gygi, Monica P Colaiácovo, Stephen J Elledge. Proc Natl Acad Sci U S A 2010
381
19

Histone H1 couples initiation and amplification of ubiquitin signalling after DNA damage.
Tina Thorslund, Anita Ripplinger, Saskia Hoffmann, Thomas Wild, Michael Uckelmann, Bine Villumsen, Takeo Narita, Titia K Sixma, Chunaram Choudhary, Simon Bekker-Jensen,[...]. Nature 2015
229
19

Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair.
Maria Victoria Botuyan, Joseph Lee, Irene M Ward, Ja-Eun Kim, James R Thompson, Junjie Chen, Georges Mer. Cell 2006
705
19

Human HDAC1 and HDAC2 function in the DNA-damage response to promote DNA nonhomologous end-joining.
Kyle M Miller, Jorrit V Tjeertes, Julia Coates, Gaëlle Legube, Sophie E Polo, Sébastien Britton, Stephen P Jackson. Nat Struct Mol Biol 2010
426
18

High-resolution profiling of gammaH2AX around DNA double strand breaks in the mammalian genome.
Jason S Iacovoni, Pierre Caron, Imen Lassadi, Estelle Nicolas, Laurent Massip, Didier Trouche, Gaëlle Legube. EMBO J 2010
322
18

Histone H3 methylation links DNA damage detection to activation of the tumour suppressor Tip60.
Yingli Sun, Xiaofeng Jiang, Ye Xu, Marina K Ayrapetov, Lisa A Moreau, Johnathan R Whetstine, Brendan D Price. Nat Cell Biol 2009
306
18


Comprehensive Mapping of Histone Modifications at DNA Double-Strand Breaks Deciphers Repair Pathway Chromatin Signatures.
Thomas Clouaire, Vincent Rocher, Anahita Lashgari, Coline Arnould, Marion Aguirrebengoa, Anna Biernacka, Magdalena Skrzypczak, François Aymard, Bernard Fongang, Norbert Dojer,[...]. Mol Cell 2018
111
18

53BP1 inhibits homologous recombination in Brca1-deficient cells by blocking resection of DNA breaks.
Samuel F Bunting, Elsa Callén, Nancy Wong, Hua-Tang Chen, Federica Polato, Amanda Gunn, Anne Bothmer, Niklas Feldhahn, Oscar Fernandez-Capetillo, Liu Cao,[...]. Cell 2010
17

Double-strand break repair: 53BP1 comes into focus.
Stephanie Panier, Simon J Boulton. Nat Rev Mol Cell Biol 2014
617
17

Poly(ADP-ribosyl)ation-dependent Transient Chromatin Decondensation and Histone Displacement following Laser Microirradiation.
Hilmar Strickfaden, Darin McDonald, Michael J Kruhlak, Jean-Francois Haince, John P H Th'ng, Michele Rouleau, Toytaka Ishibashi, Gareth N Corry, Juan Ausio, D Alan Underhill,[...]. J Biol Chem 2016
62
25

Changes in chromatin structure and mobility in living cells at sites of DNA double-strand breaks.
Michael J Kruhlak, Arkady Celeste, Graham Dellaire, Oscar Fernandez-Capetillo, Waltraud G Müller, James G McNally, David P Bazett-Jones, André Nussenzweig. J Cell Biol 2006
385
16

MacroH2A1.1 and PARP-1 cooperate to regulate transcription by promoting CBP-mediated H2B acetylation.
Hongshan Chen, Penelope D Ruiz, Leonid Novikov, Alyssa D Casill, Jong Woo Park, Matthew J Gamble. Nat Struct Mol Biol 2014
69
23

The TIP60 Complex Regulates Bivalent Chromatin Recognition by 53BP1 through Direct H4K20me Binding and H2AK15 Acetylation.
Karine Jacquet, Amélie Fradet-Turcotte, Nikita Avvakumov, Jean-Philippe Lambert, Céline Roques, Raj K Pandita, Eric Paquet, Pauline Herst, Anne-Claude Gingras, Tej K Pandita,[...]. Mol Cell 2016
127
16

Histone demethylase KDM5A regulates the ZMYND8-NuRD chromatin remodeler to promote DNA repair.
Fade Gong, Thomas Clouaire, Marion Aguirrebengoa, Gaëlle Legube, Kyle M Miller. J Cell Biol 2017
83
19

Histone chaperone Anp32e removes H2A.Z from DNA double-strand breaks and promotes nucleosome reorganization and DNA repair.
Ozge Gursoy-Yuzugullu, Marina K Ayrapetov, Brendan D Price. Proc Natl Acad Sci U S A 2015
71
21

Requirement for PBAF in transcriptional repression and repair at DNA breaks in actively transcribed regions of chromatin.
Andreas Kakarougkas, Amani Ismail, Anna L Chambers, Enriqueta Riballo, Alex D Herbert, Julia Künzel, Markus Löbrich, Penny A Jeggo, Jessica A Downs. Mol Cell 2014
175
15

Chromatin relaxation in response to DNA double-strand breaks is modulated by a novel ATM- and KAP-1 dependent pathway.
Yael Ziv, Dana Bielopolski, Yaron Galanty, Claudia Lukas, Yoichi Taya, David C Schultz, Jiri Lukas, Simon Bekker-Jensen, Jiri Bartek, Yosef Shiloh. Nat Cell Biol 2006
531
15

MacroH2A1 and ATM Play Opposing Roles in Paracrine Senescence and the Senescence-Associated Secretory Phenotype.
Hongshan Chen, Penelope D Ruiz, Wendy M McKimpson, Leonid Novikov, Richard N Kitsis, Matthew J Gamble. Mol Cell 2015
119
15

SETD2-dependent histone H3K36 trimethylation is required for homologous recombination repair and genome stability.
Sophia X Pfister, Sara Ahrabi, Lykourgos-Panagiotis Zalmas, Sovan Sarkar, François Aymard, Csanád Z Bachrati, Thomas Helleday, Gaëlle Legube, Nicholas B La Thangue, Andrew C G Porter,[...]. Cell Rep 2014
260
15

The poly(ADP-ribose)-dependent chromatin remodeler Alc1 induces local chromatin relaxation upon DNA damage.
Hafida Sellou, Théo Lebeaupin, Catherine Chapuis, Rebecca Smith, Anna Hegele, Hari R Singh, Marek Kozlowski, Sebastian Bultmann, Andreas G Ladurner, Gyula Timinszky,[...]. Mol Biol Cell 2016
64
23

Splicing regulates NAD metabolite binding to histone macroH2A.
Georg Kustatscher, Michael Hothorn, Céline Pugieux, Klaus Scheffzek, Andreas G Ladurner. Nat Struct Mol Biol 2005
234
15

Temporal and Spatial Uncoupling of DNA Double Strand Break Repair Pathways within Mammalian Heterochromatin.
Katerina Tsouroula, Audrey Furst, Melanie Rogier, Vincent Heyer, Anne Maglott-Roth, Alexia Ferrand, Bernardo Reina-San-Martin, Evi Soutoglou. Mol Cell 2016
138
14

Prime, repair, restore: the active role of chromatin in the DNA damage response.
Gaston Soria, Sophie E Polo, Geneviève Almouzni. Mol Cell 2012
242
14

SETDB1, HP1 and SUV39 promote repositioning of 53BP1 to extend resection during homologous recombination in G2 cells.
Meryem Alagoz, Yoko Katsuki, Hideaki Ogiwara, Tomoo Ogi, Atsushi Shibata, Andreas Kakarougkas, Penny Jeggo. Nucleic Acids Res 2015
50
28

Histone acetylation by Trrap-Tip60 modulates loading of repair proteins and repair of DNA double-strand breaks.
Rabih Murr, Joanna I Loizou, Yun-Gui Yang, Cyrille Cuenin, Hai Li, Zhao-Qi Wang, Zdenko Herceg. Nat Cell Biol 2006
440
14

RNF168 binds and amplifies ubiquitin conjugates on damaged chromosomes to allow accumulation of repair proteins.
Carsten Doil, Niels Mailand, Simon Bekker-Jensen, Patrice Menard, Dorthe Helena Larsen, Rainer Pepperkok, Jan Ellenberg, Stephanie Panier, Daniel Durocher, Jiri Bartek,[...]. Cell 2009
653
14

The AAA-ATPase VCP/p97 promotes 53BP1 recruitment by removing L3MBTL1 from DNA double-strand breaks.
Klara Acs, Martijn S Luijsterburg, Leena Ackermann, Florian A Salomons, Thorsten Hoppe, Nico P Dantuma. Nat Struct Mol Biol 2011
203
14

Requirement of ATM-dependent monoubiquitylation of histone H2B for timely repair of DNA double-strand breaks.
Lilach Moyal, Yaniv Lerenthal, Mali Gana-Weisz, Gilad Mass, Sairei So, Shih-Ya Wang, Berina Eppink, Young Min Chung, Gil Shalev, Efrat Shema,[...]. Mol Cell 2011
265
14


Site-specific DICER and DROSHA RNA products control the DNA-damage response.
Sofia Francia, Flavia Michelini, Alka Saxena, Dave Tang, Michiel de Hoon, Viviana Anelli, Marina Mione, Piero Carninci, Fabrizio d'Adda di Fagagna. Nature 2012
346
13

QKI-mediated alternative splicing of the histone variant MacroH2A1 regulates cancer cell proliferation.
Leonid Novikov, Jong Woo Park, Hongshan Chen, Hadassa Klerman, Abubakar S Jalloh, Matthew J Gamble. Mol Cell Biol 2011
113
13

Removal of H2A.Z by INO80 promotes homologous recombination.
Hanan E Alatwi, Jessica A Downs. EMBO Rep 2015
76
17

Regulation of DNA double-strand break repair by ubiquitin and ubiquitin-like modifiers.
Petra Schwertman, Simon Bekker-Jensen, Niels Mailand. Nat Rev Mol Cell Biol 2016
186
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.