A citation-based method for searching scientific literature

Thomas Willems, Melissa Gymrek, Gareth Highnam, David Mittelman, Yaniv Erlich. Genome Res 2014
Times Cited: 109







List of co-cited articles
743 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Abundant contribution of short tandem repeats to gene expression variation in humans.
Melissa Gymrek, Thomas Willems, Audrey Guilmatre, Haoyang Zeng, Barak Markus, Stoyan Georgiev, Mark J Daly, Alkes L Price, Jonathan K Pritchard, Andrew J Sharp,[...]. Nat Genet 2016
139
43

lobSTR: A short tandem repeat profiler for personal genomes.
Melissa Gymrek, David Golan, Saharon Rosset, Yaniv Erlich. Genome Res 2012
168
38



Genome-wide profiling of heritable and de novo STR variations.
Thomas Willems, Dina Zielinski, Jie Yuan, Assaf Gordon, Melissa Gymrek, Yaniv Erlich. Nat Methods 2017
70
31

The overdue promise of short tandem repeat variation for heritability.
Maximilian O Press, Keisha D Carlson, Christine Queitsch. Trends Genet 2014
50
38


The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
18

Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans.
Javier Quilez, Audrey Guilmatre, Paras Garg, Gareth Highnam, Melissa Gymrek, Yaniv Erlich, Ricky S Joshi, David Mittelman, Andrew J Sharp. Nucleic Acids Res 2016
47
38

Accurate human microsatellite genotypes from high-throughput resequencing data using informed error profiles.
Gareth Highnam, Christopher Franck, Andy Martin, Calvin Stephens, Ashwin Puthige, David Mittelman. Nucleic Acids Res 2013
83
20

Tandem repeat variation in human and great ape populations and its impact on gene expression divergence.
Tugce Bilgin Sonay, Tiago Carvalho, Mark D Robinson, Maja P Greminger, Michael Krützen, David Comas, Gareth Highnam, David Mittelman, Andrew Sharp, Tomàs Marques-Bonet,[...]. Genome Res 2015
36
47

Repeat instability: mechanisms of dynamic mutations.
Christopher E Pearson, Kerrie Nichol Edamura, John D Cleary. Nat Rev Genet 2005
606
17

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
17

Variable tandem repeats accelerate evolution of coding and regulatory sequences.
Rita Gemayel, Marcelo D Vinces, Matthieu Legendre, Kevin J Verstrepen. Annu Rev Genet 2010
319
16

Unstable tandem repeats in promoters confer transcriptional evolvability.
Marcelo D Vinces, Matthieu Legendre, Marina Caldara, Masaki Hagihara, Kevin J Verstrepen. Science 2009
209
16

A variable dinucleotide repeat in the CFTR gene contributes to phenotype diversity by forming RNA secondary structures that alter splicing.
Timothy W Hefferon, Joshua D Groman, Catherine E Yurk, Garry R Cutting. Proc Natl Acad Sci U S A 2004
93
16

A direct characterization of human mutation based on microsatellites.
James X Sun, Agnar Helgason, Gisli Masson, Sigríður Sunna Ebenesersdóttir, Heng Li, Swapan Mallick, Sante Gnerre, Nick Patterson, Augustine Kong, David Reich,[...]. Nat Genet 2012
171
15


An integrated map of structural variation in 2,504 human genomes.
Peter H Sudmant, Tobias Rausch, Eugene J Gardner, Robert E Handsaker, Alexej Abyzov, John Huddleston, Yan Zhang, Kai Ye, Goo Jun, Markus Hsi-Yang Fritz,[...]. Nature 2015
936
14

MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals.
Keisha D Carlson, Peter H Sudmant, Maximilian O Press, Evan E Eichler, Jay Shendure, Christine Queitsch. Genome Res 2015
26
53


Accurate typing of short tandem repeats from genome-wide sequencing data and its applications.
Arkarachai Fungtammasan, Guruprasad Ananda, Suzanne E Hile, Marcia Shu-Wei Su, Chen Sun, Robert Harris, Paul Medvedev, Kristin Eckert, Kateryna D Makova. Genome Res 2015
45
31

Large-scale analysis of tandem repeat variability in the human genome.
Jorge Duitama, Alena Zablotskaya, Rita Gemayel, An Jansen, Stefanie Belet, Joris R Vermeesch, Kevin J Verstrepen, Guy Froyen. Nucleic Acids Res 2014
37
35

A genomic view of short tandem repeats.
Melissa Gymrek. Curr Opin Genet Dev 2017
32
40

A polymorphic microsatellite that mediates induction of PIG3 by p53.
Ana Contente, Alexandra Dittmer, Manuela C Koch, Judith Roth, Matthias Dobbelstein. Nat Genet 2002
182
12

Shortened microsatellite d(CA)21 sequence down-regulates promoter activity of matrix metalloproteinase 9 gene.
S Shimajiri, N Arima, A Tanimoto, Y Murata, T Hamada, K Y Wang, Y Sasaguri. FEBS Lett 1999
157
12

Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements.
Sterling Sawaya, Andrew Bagshaw, Emmanuel Buschiazzo, Pankaj Kumar, Shantanu Chowdhury, Michael A Black, Neil Gemmell. PLoS One 2013
84
14

Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
12

Interpreting short tandem repeat variations in humans using mutational constraint.
Melissa Gymrek, Thomas Willems, David Reich, Yaniv Erlich. Nat Genet 2017
25
48

Molecular origins of rapid and continuous morphological evolution.
John W Fondon, Harold R Garner. Proc Natl Acad Sci U S A 2004
366
11



The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.
Swapan Mallick, Heng Li, Mark Lipson, Iain Mathieson, Melissa Gymrek, Fernando Racimo, Mengyao Zhao, Niru Chennagiri, Susanne Nordenfelt, Arti Tandon,[...]. Nature 2016
464
10

Resolving the complexity of the human genome using single-molecule sequencing.
Mark J P Chaisson, John Huddleston, Megan Y Dennis, Peter H Sudmant, Maika Malig, Fereydoun Hormozdiari, Francesca Antonacci, Urvashi Surti, Richard Sandstrom, Matthew Boitano,[...]. Nature 2015
378
9

A polymorphic dinucleotide repeat in the rat nucleolin gene forms Z-DNA and inhibits promoter activity.
S Rothenburg, F Koch-Nolte, A Rich, F Haag. Proc Natl Acad Sci U S A 2001
100
9



Detection of long repeat expansions from PCR-free whole-genome sequence data.
Egor Dolzhenko, Joke J F A van Vugt, Richard J Shaw, Mitchell A Bekritsky, Marka van Blitterswijk, Giuseppe Narzisi, Subramanian S Ajay, Vani Rajan, Bryan R Lajoie, Nathan H Johnson,[...]. Genome Res 2017
113
9


Sequence-based estimation of minisatellite and microsatellite repeat variability.
Matthieu Legendre, Nathalie Pochet, Theodore Pak, Kevin J Verstrepen. Genome Res 2007
134
8

Rapid multiplexed genotyping of simple tandem repeats using capture and high-throughput sequencing.
Audrey Guilmatre, Gareth Highnam, Christelle Borel, David Mittelman, Andrew J Sharp. Hum Mutat 2013
20
40

Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing.
Jingyi Hui, Lee-Hsueh Hung, Monika Heiner, Silke Schreiner, Norma Neumüller, Gregor Reither, Stefan A Haas, Albrecht Bindereif. EMBO J 2005
159
8

popSTR: population-scale detection of STR variants.
Snædís Kristmundsdóttir, Brynja D Sigurpálsdóttir, Birte Kehr, Bjarni V Halldórsson. Bioinformatics 2017
14
57

Population-Scale Sequencing Data Enable Precise Estimates of Y-STR Mutation Rates.
Thomas Willems, Melissa Gymrek, G David Poznik, Chris Tyler-Smith, Yaniv Erlich. Am J Hum Genet 2016
39
20

Inferring short tandem repeat variation from paired-end short reads.
Minh Duc Cao, Edward Tasker, Kai Willadsen, Michael Imelfort, Sailaja Vishwanathan, Sridevi Sureshkumar, Sureshkumar Balasubramanian, Mikael Bodén. Nucleic Acids Res 2014
32
21

Intragenic tandem repeats generate functional variability.
Kevin J Verstrepen, An Jansen, Fran Lewitter, Gerald R Fink. Nat Genet 2005
379
7

Tandem repeat sequence variation as causative cis-eQTLs for protein-coding gene expression variation: the case of CSTB.
Christelle Borel, Eugenia Migliavacca, Audrey Letourneau, Maryline Gagnebin, Frédérique Béna, M Reza Sailani, Emmanouil T Dermitzakis, Andrew J Sharp, Stylianos E Antonarakis. Hum Mutat 2012
19
36


A promoter-associated polymorphic repeat modulates PAX-6 expression in human brain.
O Okladnova, Y V Syagailo, M Tranitz, G Stöber, P Riederer, R Mössner, K P Lesch. Biochem Biophys Res Commun 1998
43
16

Global diversity, population stratification, and selection of human copy-number variation.
Peter H Sudmant, Swapan Mallick, Bradley J Nelson, Fereydoun Hormozdiari, Niklas Krumm, John Huddleston, Bradley P Coe, Carl Baker, Susanne Nordenfelt, Michael Bamshad,[...]. Science 2015
174
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.