A citation-based method for searching scientific literature

Ye Zhang, Kenian Chen, Steven A Sloan, Mariko L Bennett, Anja R Scholze, Sean O'Keeffe, Hemali P Phatnani, Paolo Guarnieri, Christine Caneda, Nadine Ruderisch, Shuyun Deng, Shane A Liddelow, Chaolin Zhang, Richard Daneman, Tom Maniatis, Ben A Barres, Jian Qian Wu. J Neurosci 2014
Times Cited: 2860







List of co-cited articles
686 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Neurotoxic reactive astrocytes are induced by activated microglia.
Shane A Liddelow, Kevin A Guttenplan, Laura E Clarke, Frederick C Bennett, Christopher J Bohlen, Lucas Schirmer, Mariko L Bennett, Alexandra E Münch, Won-Suk Chung, Todd C Peterson,[...]. Nature 2017
16

Purification and Characterization of Progenitor and Mature Human Astrocytes Reveals Transcriptional and Functional Differences with Mouse.
Ye Zhang, Steven A Sloan, Laura E Clarke, Christine Caneda, Colton A Plaza, Paul D Blumenthal, Hannes Vogel, Gary K Steinberg, Michael S B Edwards, Gordon Li,[...]. Neuron 2016
14

A Unique Microglia Type Associated with Restricting Development of Alzheimer's Disease.
Hadas Keren-Shaul, Amit Spinrad, Assaf Weiner, Orit Matcovitch-Natan, Raz Dvir-Szternfeld, Tyler K Ulland, Eyal David, Kuti Baruch, David Lara-Astaiso, Beata Toth,[...]. Cell 2017
11

A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function.
John D Cahoy, Ben Emery, Amit Kaushal, Lynette C Foo, Jennifer L Zamanian, Karen S Christopherson, Yi Xing, Jane L Lubischer, Paul A Krieg, Sergey A Krupenko,[...]. J Neurosci 2008
11

Disease-Associated Microglia: A Universal Immune Sensor of Neurodegeneration.
Aleksandra Deczkowska, Hadas Keren-Shaul, Assaf Weiner, Marco Colonna, Michal Schwartz, Ido Amit. Cell 2018
429
9

Synaptic pruning by microglia is necessary for normal brain development.
Rosa C Paolicelli, Giulia Bolasco, Francesca Pagani, Laura Maggi, Maria Scianni, Patrizia Panzanelli, Maurizio Giustetto, Tiago Alves Ferreira, Eva Guiducci, Laura Dumas,[...]. Science 2011
9

Reactive astrocyte nomenclature, definitions, and future directions.
Carole Escartin, Elena Galea, András Lakatos, James P O'Callaghan, Gabor C Petzold, Alberto Serrano-Pozo, Christian Steinhäuser, Andrea Volterra, Giorgio Carmignoto, Amit Agarwal,[...]. Nat Neurosci 2021
452
9

The TREM2-APOE Pathway Drives the Transcriptional Phenotype of Dysfunctional Microglia in Neurodegenerative Diseases.
Susanne Krasemann, Charlotte Madore, Ron Cialic, Caroline Baufeld, Narghes Calcagno, Rachid El Fatimy, Lien Beckers, Elaine O'Loughlin, Yang Xu, Zain Fanek,[...]. Immunity 2017
8

Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system.
Sueli Marques, Amit Zeisel, Simone Codeluppi, David van Bruggen, Ana Mendanha Falcão, Lin Xiao, Huiliang Li, Martin Häring, Hannah Hochgerner, Roman A Romanov,[...]. Science 2016
492
7

TREM2 variants in Alzheimer's disease.
Rita Guerreiro, Aleksandra Wojtas, Jose Bras, Minerva Carrasquillo, Ekaterina Rogaeva, Elisa Majounie, Carlos Cruchaga, Celeste Sassi, John S K Kauwe, Steven Younkin,[...]. N Engl J Med 2013
7

TREM2 Maintains Microglial Metabolic Fitness in Alzheimer's Disease.
Tyler K Ulland, Wilbur M Song, Stanley Ching-Cheng Huang, Jason D Ulrich, Alexey Sergushichev, Wandy L Beatty, Alexander A Loboda, Yingyue Zhou, Nigel J Cairns, Amal Kambal,[...]. Cell 2017
493
7

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
7

Cell type- and brain region-resolved mouse brain proteome.
Kirti Sharma, Sebastian Schmitt, Caroline G Bergner, Stefka Tyanova, Nirmal Kannaiyan, Natalia Manrique-Hoyos, Karina Kongi, Ludovico Cantuti, Uwe-Karsten Hanisch, Mari-Anne Philips,[...]. Nat Neurosci 2015
420
6

Glycolytic oligodendrocytes maintain myelin and long-term axonal integrity.
Ursula Fünfschilling, Lotti M Supplie, Don Mahad, Susann Boretius, Aiman S Saab, Julia Edgar, Bastian G Brinkmann, Celia M Kassmann, Iva D Tzvetanova, Wiebke Möbius,[...]. Nature 2012
865
6

Oligodendroglia metabolically support axons and contribute to neurodegeneration.
Youngjin Lee, Brett M Morrison, Yun Li, Sylvain Lengacher, Mohamed H Farah, Paul N Hoffman, Yiting Liu, Akivaga Tsingalia, Lin Jin, Ping-Wu Zhang,[...]. Nature 2012
984
6

Single-Cell RNA Sequencing of Microglia throughout the Mouse Lifespan and in the Injured Brain Reveals Complex Cell-State Changes.
Timothy R Hammond, Connor Dufort, Lasse Dissing-Olesen, Stefanie Giera, Adam Young, Alec Wysoker, Alec J Walker, Frederick Gergits, Michael Segel, James Nemesh,[...]. Immunity 2019
730
6

Microglia sculpt postnatal neural circuits in an activity and complement-dependent manner.
Dorothy P Schafer, Emily K Lehrman, Amanda G Kautzman, Ryuta Koyama, Alan R Mardinly, Ryo Yamasaki, Richard M Ransohoff, Michael E Greenberg, Ben A Barres, Beth Stevens. Neuron 2012
6

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
6



Identification of region-specific astrocyte subtypes at single cell resolution.
Mykhailo Y Batiuk, Araks Martirosyan, Jérôme Wahis, Filip de Vin, Catherine Marneffe, Carola Kusserow, Jordan Koeppen, João Filipe Viana, João Filipe Oliveira, Thierry Voet,[...]. Nat Commun 2020
224
6

Astrocytes Control Synapse Formation, Function, and Elimination.
Won-Suk Chung, Nicola J Allen, Cagla Eroglu. Cold Spring Harb Perspect Biol 2015
372
5

Common developmental requirement for Olig function indicates a motor neuron/oligodendrocyte connection.
Q Richard Lu, Tao Sun, Zhimin Zhu, Nan Ma, Meritxell Garcia, Charles D Stiles, David H Rowitch. Cell 2002
801
5

The microglial sensome revealed by direct RNA sequencing.
Suzanne E Hickman, Nathan D Kingery, Toshiro K Ohsumi, Mark L Borowsky, Li-chong Wang, Terry K Means, Joseph El Khoury. Nat Neurosci 2013
900
5

Variant of TREM2 associated with the risk of Alzheimer's disease.
Thorlakur Jonsson, Hreinn Stefansson, Stacy Steinberg, Ingileif Jonsdottir, Palmi V Jonsson, Jon Snaedal, Sigurbjorn Bjornsson, Johanna Huttenlocher, Allan I Levey, James J Lah,[...]. N Engl J Med 2013
5

Microglia Heterogeneity in the Single-Cell Era.
Takahiro Masuda, Roman Sankowski, Ori Staszewski, Marco Prinz. Cell Rep 2020
230
5

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.
Amit Zeisel, Ana B Muñoz-Manchado, Simone Codeluppi, Peter Lönnerberg, Gioele La Manno, Anna Juréus, Sueli Marques, Hermany Munguba, Liqun He, Christer Betsholtz,[...]. Science 2015
5

Motor skill learning requires active central myelination.
Ian A McKenzie, David Ohayon, Huiliang Li, Joana Paes de Faria, Ben Emery, Koujiro Tohyama, William D Richardson. Science 2014
626
5

Complement and microglia mediate early synapse loss in Alzheimer mouse models.
Soyon Hong, Victoria F Beja-Glasser, Bianca M Nfonoyim, Arnaud Frouin, Shaomin Li, Saranya Ramakrishnan, Katherine M Merry, Qiaoqiao Shi, Arnon Rosenthal, Ben A Barres,[...]. Science 2016
5

Competing waves of oligodendrocytes in the forebrain and postnatal elimination of an embryonic lineage.
Nicoletta Kessaris, Matthew Fogarty, Palma Iannarelli, Matthew Grist, Michael Wegner, William D Richardson. Nat Neurosci 2006
731
5

Normal aging induces A1-like astrocyte reactivity.
Laura E Clarke, Shane A Liddelow, Chandrani Chakraborty, Alexandra E Münch, Myriam Heiman, Ben A Barres. Proc Natl Acad Sci U S A 2018
556
5

Genomic analysis of reactive astrogliosis.
Jennifer L Zamanian, Lijun Xu, Lynette C Foo, Navid Nouri, Lu Zhou, Rona G Giffard, Ben A Barres. J Neurosci 2012
5

Microglia in Alzheimer's disease.
David V Hansen, Jesse E Hanson, Morgan Sheng. J Cell Biol 2018
657
5

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.
Maxim V Kuleshov, Matthew R Jones, Andrew D Rouillard, Nicolas F Fernandez, Qiaonan Duan, Zichen Wang, Simon Koplev, Sherry L Jenkins, Kathleen M Jagodnik, Alexander Lachmann,[...]. Nucleic Acids Res 2016
5

Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.
Iris E Jansen, Jeanne E Savage, Kyoko Watanabe, Julien Bryois, Dylan M Williams, Stacy Steinberg, Julia Sealock, Ida K Karlsson, Sara Hägg, Lavinia Athanasiu,[...]. Nat Genet 2019
817
5

Astrocyte-neuron lactate transport is required for long-term memory formation.
Akinobu Suzuki, Sarah A Stern, Ozlem Bozdagi, George W Huntley, Ruth H Walker, Pierre J Magistretti, Cristina M Alberini. Cell 2011
924
5

Lactate in the brain: from metabolic end-product to signalling molecule.
Pierre J Magistretti, Igor Allaman. Nat Rev Neurosci 2018
410
5

Resting microglial cells are highly dynamic surveillants of brain parenchyma in vivo.
Axel Nimmerjahn, Frank Kirchhoff, Fritjof Helmchen. Science 2005
5

Microglial subtypes: diversity within the microglial community.
Vassilis Stratoulias, Jose Luis Venero, Marie-Ève Tremblay, Bertrand Joseph. EMBO J 2019
213
5

Uniquely hominid features of adult human astrocytes.
Nancy Ann Oberheim, Takahiro Takano, Xiaoning Han, Wei He, Jane H C Lin, Fushun Wang, Qiwu Xu, Jeffrey D Wyatt, Webster Pilcher, Jeffrey G Ojemann,[...]. J Neurosci 2009
772
5

Oligodendrocyte Development and Plasticity.
Dwight E Bergles, William D Richardson. Cold Spring Harb Perspect Biol 2015
264
5

Large-scale proteomic analysis of Alzheimer's disease brain and cerebrospinal fluid reveals early changes in energy metabolism associated with microglia and astrocyte activation.
Erik C B Johnson, Eric B Dammer, Duc M Duong, Lingyan Ping, Maotian Zhou, Luming Yin, Lenora A Higginbotham, Andrew Guajardo, Bartholomew White, Juan C Troncoso,[...]. Nat Med 2020
268
5

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
5


A polarizing question: do M1 and M2 microglia exist?
Richard M Ransohoff. Nat Neurosci 2016
877
4

Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.
Rebecca Sims, Sven J van der Lee, Adam C Naj, Céline Bellenguez, Nandini Badarinarayan, Johanna Jakobsdottir, Brian W Kunkle, Anne Boland, Rachel Raybould, Joshua C Bis,[...]. Nat Genet 2017
498
4

Single-cell transcriptomic analysis of Alzheimer's disease.
Hansruedi Mathys, Jose Davila-Velderrain, Zhuyu Peng, Fan Gao, Shahin Mohammadi, Jennie Z Young, Madhvi Menon, Liang He, Fatema Abdurrob, Xueqiao Jiang,[...]. Nature 2019
742
4

Identification of a unique TGF-β-dependent molecular and functional signature in microglia.
Oleg Butovsky, Mark P Jedrychowski, Craig S Moore, Ron Cialic, Amanda J Lanser, Galina Gabriely, Thomas Koeglsperger, Ben Dake, Pauline M Wu, Camille E Doykan,[...]. Nat Neurosci 2014
4

The transcriptome and metabolic gene signature of protoplasmic astrocytes in the adult murine cortex.
Ditte Lovatt, Ursula Sonnewald, Helle S Waagepetersen, Arne Schousboe, Wei He, Jane H-C Lin, Xiaoning Han, Takahiro Takano, Su Wang, Fraser J Sim,[...]. J Neurosci 2007
350
4

Brain energy metabolism: focus on astrocyte-neuron metabolic cooperation.
Mireille Bélanger, Igor Allaman, Pierre J Magistretti. Cell Metab 2011
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.